mRNA_Ecto-sp8_S_contig9832.31632.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9832.31632.1
Unique NamemRNA_Ecto-sp8_S_contig9832.31632.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9832.31632.1 vs. uniprot
Match: D7FHP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHP0_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 5.950e-40
Identity = 82/92 (89.13%), Postives = 84/92 (91.30%), Query Frame = 1 
Query:    1 SSVGHGRQRGITSSFRRNRFP-ERDLFSKPSYKRSFRSQPHQXXXXXX-QGPISLKGLLDLELVWNRQRGRKGSLRLGEVIEAIAGIDSQVL 270
            SSVG GRQRGITSSF R RFP ERDLFSKPSYKRSFRSQPHQ XXXXX QGP SLKG+LDLEL WNRQRGRKGSLRLGEVIEAIAGIDSQ+L
Sbjct:  107 SSVGRGRQRGITSSFGRTRFPAERDLFSKPSYKRSFRSQPHQHXXXXXXQGPTSLKGVLDLELEWNRQRGRKGSLRLGEVIEAIAGIDSQIL 198
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9832.31632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHP0_ECTSI5.950e-4089.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9832contigEcto-sp8_S_contig9832:2361..3489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size290
Hectar predicted targeting categoryother localisation
Exons2
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145350.822811-CDS-Ecto-sp8_S_contig9832:2360..24241681145350.822811-CDS-Ecto-sp8_S_contig9832:2360..2424Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9832 2361..2424 +
1681145350.8427756-CDS-Ecto-sp8_S_contig9832:3265..34891681145350.8427756-CDS-Ecto-sp8_S_contig9832:3265..3489Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9832 3266..3489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9832.31632.1prot_Ecto-sp8_S_contig9832.31632.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9832 2361..3489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9832.31632.1

>prot_Ecto-sp8_S_contig9832.31632.1 ID=prot_Ecto-sp8_S_contig9832.31632.1|Name=mRNA_Ecto-sp8_S_contig9832.31632.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=96bp
SSVGHGRQRGITSSFRRNRFPERDLFSKPSYKRSFRSQPHQHQHQHQQGP
ISLKGLLDLELVWNRQRGRKGSLRLGEVIEAIAGIDSQVLCYVVK*
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mRNA from alignment at Ecto-sp8_S_contig9832:2361..3489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9832.31632.1 ID=mRNA_Ecto-sp8_S_contig9832.31632.1|Name=mRNA_Ecto-sp8_S_contig9832.31632.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1129bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9832:2361..3489+ (Ectocarpus species8 EcLAC_412)
TCTTCCGTTGGCCATGGTAGGCAGCGAGGGATAACCTCATCATTCAGGCG
CAACCGGTTCCCAGGCAAGACCTGTCTTCTTGTGTAATTTACTCTTTTAC
TCTGTGGTACACCAGTCGGTGGTCCTCTGTGGCGGTCCCTGAATAGCGGG
ATGTCCTTAATAACGGCACCGTGCCAAGCGCATCTCTCAGTACAATCACT
ATTACGAATAGTGGCACTGCCCCGAATAACGGCACCAATACCTCTTGGGA
CTACCTACCGCTATTGAGGACCGCCGACTGTATGTATTGTACCATGTATT
AATATTAATAGTTGGTGGGGTGTAAGGGTTAGGATTAGGGTTCGGGTTAG
AAAGTGCATGCGCACGACTCACTTGACTCCTTATGTCGAACCCGAGTTTG
GTAATAGCGGCGGGAGAACGTACTTGTACAGCATGTGTGCTAGCGATCGA
TGTTGATATTGTAGACCGATTGCTTTACCTCCACGACAACCCAAATAGAG
TTTCTCTCAAGACTTCCGCCTACACTCGGCAGTAGCAGTGACATCGGCTT
TGTGGCACAATTCTCGGTAGTAATCTAGTGACGCATCTTGTGCTTGAGCC
AGTCTAGAGACCTGTCCTTTGTCCTTTGTGGTGGTATTGTTCGATTTTGT
GGTCGCGAACGATATTAGCGGCGGCAGGAGAGCCGTGTAGAATCTCGATC
GAAAGTGGAGAGGAAGGAAGTACTTGTAGTATGTTTGGTCTCGAGTGGAA
TCGAGTGTCCTTGATCTTTGCACCCCTTTTTTTTTTTTTTGTCGTAAATT
TACTCTAAAGATCGTAAGAATACTGTCATCTGTCGCCATTTTTTTTTTTT
GCCGTCCTCCAAATTGTCCGTCTGCATCCTTCGTGTCCCCGGTCCCCGAC
AGCAGAACGCGACCTCTTCTCGAAACCGTCGTACAAGCGGTCATTCCGCT
CCCAACCTCATCAGCATCAGCACCAGCACCAGCAGGGTCCGATATCTTTG
AAGGGCCTTCTCGACCTTGAGCTGGTGTGGAATCGGCAGCGGGGGCGGAA
GGGGTCTCTGCGGTTGGGAGAGGTCATCGAGGCCATTGCGGGCATCGATT
CACAGGTACTTTGTTATGTCGTGAAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9832:2361..3489+

>mRNA_Ecto-sp8_S_contig9832.31632.1 ID=mRNA_Ecto-sp8_S_contig9832.31632.1|Name=mRNA_Ecto-sp8_S_contig9832.31632.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9832:2361..3489+ (Ectocarpus species8 EcLAC_412)
TCTTCCGTTGGCCATGGTAGGCAGCGAGGGATAACCTCATCATTCAGGCG
CAACCGGTTCCCAGAACGCGACCTCTTCTCGAAACCGTCGTACAAGCGGT
CATTCCGCTCCCAACCTCATCAGCATCAGCACCAGCACCAGCAGGGTCCG
ATATCTTTGAAGGGCCTTCTCGACCTTGAGCTGGTGTGGAATCGGCAGCG
GGGGCGGAAGGGGTCTCTGCGGTTGGGAGAGGTCATCGAGGCCATTGCGG
GCATCGATTCACAGGTACTTTGTTATGTCGTGAAGTAG
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