mRNA_Ecto-sp8_S_contig9807.31590.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9807.31590.1
Unique NamemRNA_Ecto-sp8_S_contig9807.31590.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9807.31590.1 vs. uniprot
Match: A0A6H5J7J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J8_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 7.500e-8
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   19 AVPLLERALSIRMKALGSSHPDTVAIQNKLEQGRK 123
            AVPLLERALSIRMK LG +HPDTV+ QN L+  R+
Sbjct:    7 AVPLLERALSIRMKKLGENHPDTVSTQNSLDVVRR 41
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BLAST of mRNA_Ecto-sp8_S_contig9807.31590.1 vs. uniprot
Match: A0A350X6N5_9CYAN (Kinesin (Fragment) n=1 Tax=Cyanobacteria bacterium UBA11372 TaxID=2055768 RepID=A0A350X6N5_9CYAN)

HSP 1 Score: 46.2 bits (108), Expect = 5.890e-5
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    1 QGKRDQAVPLLERALSIRMKALGSSHPDTVAIQNKL 108
            QGK  +A+PL +RAL+IR KALGS HPD  A  N L
Sbjct:   57 QGKYAEAIPLAQRALAIREKALGSEHPDVAASLNNL 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9807.31590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7J8_9PHAE7.500e-871.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A350X6N5_9CYAN5.890e-561.11Kinesin (Fragment) n=1 Tax=Cyanobacteria bacterium... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9807contigEcto-sp8_S_contig9807:5557..5685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size129
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_005190.1
Cds size129
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145347.560485-CDS-Ecto-sp8_S_contig9807:5556..56851681145347.560485-CDS-Ecto-sp8_S_contig9807:5556..5685Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9807 5557..5685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9807.31590.1prot_Ecto-sp8_S_contig9807.31590.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9807 5557..5685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9807.31590.1

>prot_Ecto-sp8_S_contig9807.31590.1 ID=prot_Ecto-sp8_S_contig9807.31590.1|Name=mRNA_Ecto-sp8_S_contig9807.31590.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=43bp
QGKRDQAVPLLERALSIRMKALGSSHPDTVAIQNKLEQGRKQV
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mRNA from alignment at Ecto-sp8_S_contig9807:5557..5685+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9807.31590.1 ID=mRNA_Ecto-sp8_S_contig9807.31590.1|Name=mRNA_Ecto-sp8_S_contig9807.31590.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=129bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9807:5557..5685+ (Ectocarpus species8 EcLAC_412)
CAGGGGAAGCGCGATCAAGCAGTTCCTCTCTTGGAGAGGGCCTTGTCAAT
CCGCATGAAGGCTCTCGGGAGCAGCCACCCTGACACCGTTGCCATCCAGA
ACAAGCTGGAGCAAGGGCGAAAACAGGTT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9807:5557..5685+

>mRNA_Ecto-sp8_S_contig9807.31590.1 ID=mRNA_Ecto-sp8_S_contig9807.31590.1|Name=mRNA_Ecto-sp8_S_contig9807.31590.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9807:5557..5685+ (Ectocarpus species8 EcLAC_412)
CAGGGGAAGCGCGATCAAGCAGTTCCTCTCTTGGAGAGGGCCTTGTCAAT
CCGCATGAAGGCTCTCGGGAGCAGCCACCCTGACACCGTTGCCATCCAGA
ACAAGCTGGAGCAAGGGCGAAAACAGGTT
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