mRNA_Ecto-sp8_S_contig97715.31536.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: A0A2T8HPA2_9RHOB (Recombinase family protein n=2 Tax=Pararhodobacter oceanensis TaxID=2172121 RepID=A0A2T8HPA2_9RHOB) HSP 1 Score: 61.6 bits (148), Expect = 5.970e-10 Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1
Query: 7 KLLDMLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL 123
KLL++L ITKPA AGL SESSLKLVAGVGFEPTTFRL
Sbjct: 481 KLLELLEITKPAGEAGLADSESSLKLVAGVGFEPTTFRL 519
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: A0A0P1H2D7_9RHOB (Uncharacterized protein n=1 Tax=Phaeobacter sp. CECT 5382 TaxID=1712645 RepID=A0A0P1H2D7_9RHOB) HSP 1 Score: 57.8 bits (138), Expect = 1.100e-9 Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 1
Query: 7 KLLDMLNITKPALGAGLDISESSLKLVAGVGFE 105
KLL+MLN+TKPALGAGLDISESSLKLVAG F+
Sbjct: 15 KLLEMLNVTKPALGAGLDISESSLKLVAGARFK 47
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: UPI001A2F91B1 (Recombinase family protein n=1 Tax=Rhodobacteraceae bacterium F11138 TaxID=2794865 RepID=UPI001A2F91B1) HSP 1 Score: 55.5 bits (132), Expect = 8.890e-8 Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 7 KLLDMLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL 123
KLL+ML KPA AGL+ S SSL+LVAGVGFEPTTFRL
Sbjct: 530 KLLEMLTKAKPAELAGLEESASSLELVAGVGFEPTTFRL 568
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: A0A2S8EPX5_9RHOB (Recombinase family protein n=1 Tax=Rhodobacteraceae bacterium WD3A24 TaxID=2086263 RepID=A0A2S8EPX5_9RHOB) HSP 1 Score: 54.3 bits (129), Expect = 2.280e-7 Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 1
Query: 7 KLLDMLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL 123
KLL++L KPA GAG + SLKLVAGVGFEPTTFRL
Sbjct: 532 KLLELLTKAKPACGAGFVANGHSLKLVAGVGFEPTTFRL 570
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: A3TY86_PSEBH (Site-specific recombinase and resolvase superfamily protein n=1 Tax=Pseudooceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / KCTC 12145 / HTCC2597) TaxID=252305 RepID=A3TY86_PSEBH) HSP 1 Score: 53.1 bits (126), Expect = 5.820e-7 Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1
Query: 7 KLLDMLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL 123
KLL+ML KPA AG ++SSL+LVAGVGFEPTTFRL
Sbjct: 350 KLLEMLTKAKPAGEAGFRSNQSSLELVAGVGFEPTTFRL 388
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: A0A4R5VI12_9RHOB (Recombinase family protein n=1 Tax=Antarcticimicrobium luteum TaxID=2547397 RepID=A0A4R5VI12_9RHOB) HSP 1 Score: 53.1 bits (126), Expect = 5.820e-7 Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query: 7 KLLDMLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL 123
KLL+ML +PA AGL+ + SLK+VAGVGFEPTTFRL
Sbjct: 530 KLLEMLKQIRPAGEAGLEANSCSLKMVAGVGFEPTTFRL 568
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: A0A2N3ERB3_9PROT (Recombinase family protein n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-1 TaxID=2013655 RepID=A0A2N3ERB3_9PROT) HSP 1 Score: 52.4 bits (124), Expect = 1.090e-6 Identity = 28/39 (71.79%), Postives = 30/39 (76.92%), Query Frame = 1
Query: 7 KLLDMLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL 123
KLL+ML KPA AGL + SLKLVAGVGFEPTTFRL
Sbjct: 532 KLLEMLAKAKPAEEAGLVANGHSLKLVAGVGFEPTTFRL 570
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: A0A1I5BRJ1_9RHOB (Site-specific DNA recombinase n=1 Tax=Roseovarius lutimaris TaxID=1005928 RepID=A0A1I5BRJ1_9RHOB) HSP 1 Score: 52.4 bits (124), Expect = 1.090e-6 Identity = 28/39 (71.79%), Postives = 30/39 (76.92%), Query Frame = 1
Query: 7 KLLDMLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL 123
KLL+ML TKPA AG + SLKLVAGVGFEPTTFRL
Sbjct: 530 KLLEMLIKTKPAGKAGFIANARSLKLVAGVGFEPTTFRL 568
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: A0A843YEL9_9RHOB (Uncharacterized protein n=1 Tax=Tritonibacter litoralis TaxID=2662264 RepID=A0A843YEL9_9RHOB) HSP 1 Score: 49.7 bits (117), Expect = 1.320e-6 Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1
Query: 10 LLDMLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL 123
L+ ML TKPA AG+ ++SSL LVAGVGFEPTTFRL
Sbjct: 58 LITMLKQTKPAEEAGIYDAKSSLILVAGVGFEPTTFRL 95
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: UPI0015830769 (hypothetical protein n=1 Tax=Ruegeria arenilitoris TaxID=1173585 RepID=UPI0015830769) HSP 1 Score: 50.1 bits (118), Expect = 4.800e-6 Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 1
Query: 19 MLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL 123
MLN KPA AGL + SLKLVAGVGFEPTTFRL
Sbjct: 171 MLNKAKPADEAGLVSDDCSLKLVAGVGFEPTTFRL 205 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig97715.31536.1 >prot_Ecto-sp8_S_contig97715.31536.1 ID=prot_Ecto-sp8_S_contig97715.31536.1|Name=mRNA_Ecto-sp8_S_contig97715.31536.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=36bp MLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL*back to top mRNA from alignment at Ecto-sp8_S_contig97715:439..564+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig97715.31536.1 ID=mRNA_Ecto-sp8_S_contig97715.31536.1|Name=mRNA_Ecto-sp8_S_contig97715.31536.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97715:439..564+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97715:439..564+ >mRNA_Ecto-sp8_S_contig97715.31536.1 ID=mRNA_Ecto-sp8_S_contig97715.31536.1|Name=mRNA_Ecto-sp8_S_contig97715.31536.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=108bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97715:439..564+ (Ectocarpus species8 EcLAC_412)back to top |