mRNA_Ecto-sp8_S_contig97715.31536.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97715.31536.1
Unique NamemRNA_Ecto-sp8_S_contig97715.31536.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: A0A2T8HPA2_9RHOB (Recombinase family protein n=2 Tax=Pararhodobacter oceanensis TaxID=2172121 RepID=A0A2T8HPA2_9RHOB)

HSP 1 Score: 61.6 bits (148), Expect = 5.970e-10
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1
Query:    7 KLLDMLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL 123
            KLL++L ITKPA  AGL  SESSLKLVAGVGFEPTTFRL
Sbjct:  481 KLLELLEITKPAGEAGLADSESSLKLVAGVGFEPTTFRL 519          
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: A0A0P1H2D7_9RHOB (Uncharacterized protein n=1 Tax=Phaeobacter sp. CECT 5382 TaxID=1712645 RepID=A0A0P1H2D7_9RHOB)

HSP 1 Score: 57.8 bits (138), Expect = 1.100e-9
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 1
Query:    7 KLLDMLNITKPALGAGLDISESSLKLVAGVGFE 105
            KLL+MLN+TKPALGAGLDISESSLKLVAG  F+
Sbjct:   15 KLLEMLNVTKPALGAGLDISESSLKLVAGARFK 47          
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: UPI001A2F91B1 (Recombinase family protein n=1 Tax=Rhodobacteraceae bacterium F11138 TaxID=2794865 RepID=UPI001A2F91B1)

HSP 1 Score: 55.5 bits (132), Expect = 8.890e-8
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1
Query:    7 KLLDMLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL 123
            KLL+ML   KPA  AGL+ S SSL+LVAGVGFEPTTFRL
Sbjct:  530 KLLEMLTKAKPAELAGLEESASSLELVAGVGFEPTTFRL 568          
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: A0A2S8EPX5_9RHOB (Recombinase family protein n=1 Tax=Rhodobacteraceae bacterium WD3A24 TaxID=2086263 RepID=A0A2S8EPX5_9RHOB)

HSP 1 Score: 54.3 bits (129), Expect = 2.280e-7
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 1
Query:    7 KLLDMLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL 123
            KLL++L   KPA GAG   +  SLKLVAGVGFEPTTFRL
Sbjct:  532 KLLELLTKAKPACGAGFVANGHSLKLVAGVGFEPTTFRL 570          
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: A3TY86_PSEBH (Site-specific recombinase and resolvase superfamily protein n=1 Tax=Pseudooceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / KCTC 12145 / HTCC2597) TaxID=252305 RepID=A3TY86_PSEBH)

HSP 1 Score: 53.1 bits (126), Expect = 5.820e-7
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1
Query:    7 KLLDMLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL 123
            KLL+ML   KPA  AG   ++SSL+LVAGVGFEPTTFRL
Sbjct:  350 KLLEMLTKAKPAGEAGFRSNQSSLELVAGVGFEPTTFRL 388          
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: A0A4R5VI12_9RHOB (Recombinase family protein n=1 Tax=Antarcticimicrobium luteum TaxID=2547397 RepID=A0A4R5VI12_9RHOB)

HSP 1 Score: 53.1 bits (126), Expect = 5.820e-7
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query:    7 KLLDMLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL 123
            KLL+ML   +PA  AGL+ +  SLK+VAGVGFEPTTFRL
Sbjct:  530 KLLEMLKQIRPAGEAGLEANSCSLKMVAGVGFEPTTFRL 568          
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: A0A2N3ERB3_9PROT (Recombinase family protein n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-1 TaxID=2013655 RepID=A0A2N3ERB3_9PROT)

HSP 1 Score: 52.4 bits (124), Expect = 1.090e-6
Identity = 28/39 (71.79%), Postives = 30/39 (76.92%), Query Frame = 1
Query:    7 KLLDMLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL 123
            KLL+ML   KPA  AGL  +  SLKLVAGVGFEPTTFRL
Sbjct:  532 KLLEMLAKAKPAEEAGLVANGHSLKLVAGVGFEPTTFRL 570          
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: A0A1I5BRJ1_9RHOB (Site-specific DNA recombinase n=1 Tax=Roseovarius lutimaris TaxID=1005928 RepID=A0A1I5BRJ1_9RHOB)

HSP 1 Score: 52.4 bits (124), Expect = 1.090e-6
Identity = 28/39 (71.79%), Postives = 30/39 (76.92%), Query Frame = 1
Query:    7 KLLDMLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL 123
            KLL+ML  TKPA  AG   +  SLKLVAGVGFEPTTFRL
Sbjct:  530 KLLEMLIKTKPAGKAGFIANARSLKLVAGVGFEPTTFRL 568          
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: A0A843YEL9_9RHOB (Uncharacterized protein n=1 Tax=Tritonibacter litoralis TaxID=2662264 RepID=A0A843YEL9_9RHOB)

HSP 1 Score: 49.7 bits (117), Expect = 1.320e-6
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1
Query:   10 LLDMLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL 123
            L+ ML  TKPA  AG+  ++SSL LVAGVGFEPTTFRL
Sbjct:   58 LITMLKQTKPAEEAGIYDAKSSLILVAGVGFEPTTFRL 95          
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Match: UPI0015830769 (hypothetical protein n=1 Tax=Ruegeria arenilitoris TaxID=1173585 RepID=UPI0015830769)

HSP 1 Score: 50.1 bits (118), Expect = 4.800e-6
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 1
Query:   19 MLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL 123
            MLN  KPA  AGL   + SLKLVAGVGFEPTTFRL
Sbjct:  171 MLNKAKPADEAGLVSDDCSLKLVAGVGFEPTTFRL 205          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97715.31536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A2T8HPA2_9RHOB5.970e-1082.05Recombinase family protein n=2 Tax=Pararhodobacter... [more]
A0A0P1H2D7_9RHOB1.100e-984.85Uncharacterized protein n=1 Tax=Phaeobacter sp. CE... [more]
UPI001A2F91B18.890e-874.36Recombinase family protein n=1 Tax=Rhodobacteracea... [more]
A0A2S8EPX5_9RHOB2.280e-769.23Recombinase family protein n=1 Tax=Rhodobacteracea... [more]
A3TY86_PSEBH5.820e-769.23Site-specific recombinase and resolvase superfamil... [more]
A0A4R5VI12_9RHOB5.820e-766.67Recombinase family protein n=1 Tax=Antarcticimicro... [more]
A0A2N3ERB3_9PROT1.090e-671.79Recombinase family protein n=1 Tax=Alphaproteobact... [more]
A0A1I5BRJ1_9RHOB1.090e-671.79Site-specific DNA recombinase n=1 Tax=Roseovarius ... [more]
A0A843YEL9_9RHOB1.320e-668.42Uncharacterized protein n=1 Tax=Tritonibacter lito... [more]
UPI00158307694.800e-674.29hypothetical protein n=1 Tax=Ruegeria arenilitoris... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97715contigEcto-sp8_S_contig97715:439..564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size126
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size108
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145343.4941251-UTR-Ecto-sp8_S_contig97715:438..4561681145343.4941251-UTR-Ecto-sp8_S_contig97715:438..456Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig97715 439..456 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145343.507148-CDS-Ecto-sp8_S_contig97715:456..5641681145343.507148-CDS-Ecto-sp8_S_contig97715:456..564Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97715 457..564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97715.31536.1prot_Ecto-sp8_S_contig97715.31536.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97715 457..564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97715.31536.1

>prot_Ecto-sp8_S_contig97715.31536.1 ID=prot_Ecto-sp8_S_contig97715.31536.1|Name=mRNA_Ecto-sp8_S_contig97715.31536.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=36bp
MLNITKPALGAGLDISESSLKLVAGVGFEPTTFRL*
back to top

mRNA from alignment at Ecto-sp8_S_contig97715:439..564+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97715.31536.1 ID=mRNA_Ecto-sp8_S_contig97715.31536.1|Name=mRNA_Ecto-sp8_S_contig97715.31536.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97715:439..564+ (Ectocarpus species8 EcLAC_412)
GGCCCCAAGTTATTGGATATGCTGAACATAACAAAGCCCGCCTTGGGGGC GGGCTTGGATATTAGCGAGAGTTCGCTGAAGTTGGTTGCGGGAGTAGGAT TTGAACCTACGACCTTCAGGTTATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97715:439..564+

>mRNA_Ecto-sp8_S_contig97715.31536.1 ID=mRNA_Ecto-sp8_S_contig97715.31536.1|Name=mRNA_Ecto-sp8_S_contig97715.31536.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=108bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97715:439..564+ (Ectocarpus species8 EcLAC_412)
ATGCTGAACATAACAAAGCCCGCCTTGGGGGCGGGCTTGGATATTAGCGA
GAGTTCGCTGAAGTTGGTTGCGGGAGTAGGATTTGAACCTACGACCTTCA
GGTTATGA
back to top