mRNA_Ecto-sp8_S_contig9767.31526.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9767.31526.1
Unique NamemRNA_Ecto-sp8_S_contig9767.31526.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9767.31526.1 vs. uniprot
Match: A0A6H5KQM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM7_9PHAE)

HSP 1 Score: 351 bits (901), Expect = 1.130e-108
Identity = 188/195 (96.41%), Postives = 192/195 (98.46%), Query Frame = 1 
Query:    1 AVWEGARTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDGNEEILEEEEDEVQGEDRAAAKEGEXXXXXXXXXXXVLVEEEEHEADMRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFDVDLNPAQMAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPFR 585
            AVWEGARTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDG+E+ILEEEEDEVQGEDRAAAKEG XXXXXXXXXX VLVEEEEHEAD+RSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTA+QAAKVGIVDSFDVDLNP QMAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPFR
Sbjct:  996 AVWEGARTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDGSEKILEEEEDEVQGEDRAAAKEGXXXXXXXXXXXEVLVEEEEHEADIRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTAAQAAKVGIVDSFDVDLNPVQMAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPFR 1190
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9767.31526.1 vs. uniprot
Match: D7FZW2_ECTSI (Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW2_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 1.480e-76
Identity = 149/195 (76.41%), Postives = 151/195 (77.44%), Query Frame = 1 
Query:    1 AVWEGARTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDGNEEILEEEEDEVQGEDRAAAKEGEXXXXXXXXXXXVLVEEEEHEADMRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFDVDLNPAQMAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPFR 585
            AVWEGARTRGCYEDDPGPKRRMRVYCFR+                                          +AKEGEXXXXXXXXXX VLVEEEEHEADMRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFDVDLNPAQMAAIVQWHKETVGMAALYEIPHQM QTPLNDPAKSPFR
Sbjct:  715 AVWEGARTRGCYEDDPGPKRRMRVYCFRT------------------------------------------SAKEGEXXXXXXXXXXEVLVEEEEHEADMRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFDVDLNPAQMAAIVQWHKETVGMAALYEIPHQMMQTPLNDPAKSPFR 867
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9767.31526.1 vs. uniprot
Match: A0A2S1PRV6_FUCSE (Putative dicer (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRV6_FUCSE)

HSP 1 Score: 206 bits (524), Expect = 4.570e-58
Identity = 114/201 (56.72%), Postives = 137/201 (68.16%), Query Frame = 1 
Query:    1 AVWEGA-RTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDGNEEILEEEEDEVQGEDRAAAKEGEXXXXXXXXXXXVLVEEE-----EHEADMRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFDVDLNPAQMAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPFR 585
            A WE A R RGCYE  PGPKRRMRVYCFRSP  E   WVP+    R RR+     +        +V+GED +   +G               EE+     + EA+  +F+PKL VD+G+GPGKGLGPRL+VGLASAAPLPLTA+QA KVGI DSFDVDLNPAQ+A+IVQWH+ET+GM ALY+IPHQ+T+TP  DP K PFR
Sbjct:  347 AAWEDAKRPRGCYEGVPGPKRRMRVYCFRSPPRELNAWVPSSNEPRTRRATAGDYKRSAS---GKVEGEDESGGAKG---VEDDETLKEEPAEEDGGDGGDDEANFPTFNPKLGVDVGQGPGKGLGPRLYVGLASAAPLPLTATQADKVGIEDSFDVDLNPAQLASIVQWHRETLGMVALYKIPHQLTRTPQMDPEKCPFR 541
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9767.31526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KQM7_9PHAE1.130e-10896.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZW2_ECTSI1.480e-7676.41Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A2S1PRV6_FUCSE4.570e-5856.72Putative dicer (Fragment) n=1 Tax=Fucus serratus T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9767contigEcto-sp8_S_contig9767:37..1518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score261.5
Seed ortholog evalue3.1e-67
Seed eggNOG ortholog2880.D7FZW2
Model size585
KEGG koko:K11592
KEGG Pathwayko05206,map05206
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.ribonuclease III activity
EggNOG OGsCOG0571@1,KOG0701@2759
Cds size585
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145342.6916456-CDS-Ecto-sp8_S_contig9767:36..1501681145342.6916456-CDS-Ecto-sp8_S_contig9767:36..150Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9767 37..150 -
1681145342.7124467-CDS-Ecto-sp8_S_contig9767:629..8091681145342.7124467-CDS-Ecto-sp8_S_contig9767:629..809Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9767 630..809 -
1681145342.7241461-CDS-Ecto-sp8_S_contig9767:1227..15181681145342.7241461-CDS-Ecto-sp8_S_contig9767:1227..1518Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9767 1228..1518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9767.31526.1prot_Ecto-sp8_S_contig9767.31526.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9767 37..1518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9767.31526.1

>prot_Ecto-sp8_S_contig9767.31526.1 ID=prot_Ecto-sp8_S_contig9767.31526.1|Name=mRNA_Ecto-sp8_S_contig9767.31526.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=195bp
AVWEGARTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSE
LDGNEEILEEEEDEVQGEDRAAAKEGEEGEEGEEEDEEVLVEEEEHEADM
RSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFD
VDLNPAQMAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPFR
back to top

mRNA from alignment at Ecto-sp8_S_contig9767:37..1518-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9767.31526.1 ID=mRNA_Ecto-sp8_S_contig9767.31526.1|Name=mRNA_Ecto-sp8_S_contig9767.31526.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1482bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9767:37..1518- (Ectocarpus species8 EcLAC_412)
GCCGTGTGGGAGGGGGCGCGGACCCGGGGATGCTACGAGGACGACCCCGG
ACCGAAACGGCGCATGAGGGTCTACTGTTTCCGCAGCCCGGCCGGAGAGG
CTGAAGGCTGGGTGCCGACGTTGAAGAGAGTGCGCAAGCGCAGGTCCGAG
CTGGACGGGAACGAAGAGATTCTGGAGGAAGAGGAGGACGAGGTTCAGGG
CGAGGACAGGGCGGCTGCGAAGGAGGGAGAGGAAGGAGAGGAAGGAGAGG
AGGAGGACGAGGAGGTCCTGGTCGAGGAGGAAGAGCATGAAGTGAGCGTT
CGCTGATCGAATGGGCTGTGCGCCCCGTGTTTCTACTTGTCTTTCCGTGG
TTGTGGAGGAGTGCGATGGTACGTTTGATGTACATTAATAGTATTCTACA
GCAGGAACCATGAGTTTTTCCGTTTTGGAATGAAACTGTGTCAGCCTGAA
ATGGGCTGCTGCTGCTGCAAGTGAGCGTGACTTGGTAGGACGAGGCAACC
ACGAGGGACATTTGGGTTGTCTTCGTTGAAGGTGGCCTTCCTCTCTCTGC
CCCCCTGTCCTTCTCCTAAGCCGTGTACTAAAACCTATGTAGTGCTAGTG
GGATAACGCCAATTTTTTGTAGCCTTACATCGGTATCCTCTTGAACAGCA
CCTCTTAAACCGTAGCCGCTGCTGCAACTCCCTCTCGCTGTCTCTCCCTT
CCACCTCAGGCCGACATGCGATCATTCCACCCCAAGCTGAAGGTGGACCT
GGGGCGGGGGCCCGGGAAGGGTCTAGGCCCCCGCCTGTTCGTGGGGTTGG
CCAGCGCGGCTCCCCTCCCTTTGACGGCCTCCCAGGCCGCCAAGGTCGGG
ATAGTGGACAGCTTCGACGTCGACCTCAATCCTGCGCAGGTGTGTAGATC
TTTTCGTGTTTGTTGTCGTCCTTTGTGTTTTTTTACGGAGATCTTGCTGT
GTGCTGGCTTTTAGTTGAGGCGGAAGAAGCATGGGGGGGGCACTGTAGGG
AAATAGTAGACGGGGGGGGGGGGGCAGATTTCATGCCCGTGAACCTGTCG
TAATAACAATTGCTGTCATCTTGTGAGTTTTAGCGATGAATGTGTTGTAT
GTCGTTGTTGTATTCGCGATGTTGGCATACTCGTATGCCATCGTCCTCGT
AGGTCGTCGTTCTTGTTCGGCCCTCCTCCTGCATGATCACAAGGGGAACA
ATCCATGGTATCGGCCTTACTCAATGAAGTGATGGAACCGGACGATCGTC
ACCACCAGCAGTTCTTGGACCCGTATATGTCCATGGTACCGGCCTTATTC
CATGAAGTGATGGAACCGGTCGATCGTCACCAACAATTCTTGGACCCGTG
TATACACGCTGCCTGCAGATGGCAGCCATAGTACAATGGCACAAGGAGAC
GGTGGGCATGGCGGCCCTTTACGAGATTCCCCACCAGATGACGCAAACGC
CTCTGAACGACCCGGCCAAGTCTCCCTTCCGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9767:37..1518-

>mRNA_Ecto-sp8_S_contig9767.31526.1 ID=mRNA_Ecto-sp8_S_contig9767.31526.1|Name=mRNA_Ecto-sp8_S_contig9767.31526.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=585bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9767:37..1518- (Ectocarpus species8 EcLAC_412)
GCCGTGTGGGAGGGGGCGCGGACCCGGGGATGCTACGAGGACGACCCCGG
ACCGAAACGGCGCATGAGGGTCTACTGTTTCCGCAGCCCGGCCGGAGAGG
CTGAAGGCTGGGTGCCGACGTTGAAGAGAGTGCGCAAGCGCAGGTCCGAG
CTGGACGGGAACGAAGAGATTCTGGAGGAAGAGGAGGACGAGGTTCAGGG
CGAGGACAGGGCGGCTGCGAAGGAGGGAGAGGAAGGAGAGGAAGGAGAGG
AGGAGGACGAGGAGGTCCTGGTCGAGGAGGAAGAGCATGAAGCCGACATG
CGATCATTCCACCCCAAGCTGAAGGTGGACCTGGGGCGGGGGCCCGGGAA
GGGTCTAGGCCCCCGCCTGTTCGTGGGGTTGGCCAGCGCGGCTCCCCTCC
CTTTGACGGCCTCCCAGGCCGCCAAGGTCGGGATAGTGGACAGCTTCGAC
GTCGACCTCAATCCTGCGCAGATGGCAGCCATAGTACAATGGCACAAGGA
GACGGTGGGCATGGCGGCCCTTTACGAGATTCCCCACCAGATGACGCAAA
CGCCTCTGAACGACCCGGCCAAGTCTCCCTTCCGG
back to top