mRNA_Ecto-sp8_S_contig9762.31521.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9762.31521.1
Unique NamemRNA_Ecto-sp8_S_contig9762.31521.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9762.31521.1 vs. uniprot
Match: D8LPJ8_ECTSI (EsV-1-179 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPJ8_ECTSI)

HSP 1 Score: 407 bits (1045), Expect = 1.480e-142
Identity = 188/226 (83.19%), Postives = 200/226 (88.50%), Query Frame = 1 
Query:   10 KTIPVPL--SGTRSRWLAMAFHKPCKFPITHYEGEYRPTWTQRWTRIGGENGSWQFFSHARDITPDNDGEPYTWEGEYGWYNLIRPMLAGPSNDWGAFDLAGLLQIDQSGEFIKACGCASLEENDLRFFVRAGITVGKHRNDRGIDHFCMTPDVFCIPGTGGKIDLTLVTTNKTIGKTLVEVYFLRGRETAEVRSRLPGMRKFYRAKRINKCFANIVNLFGGACGD 681
            K  P PL   GTRSRWL+MAFHKPCKFPIT YEGEYRPTWT+RWT IGG+NGSWQFFSHAR I PDN+GE YTWEGEYGW+NL+RPMLAGPSNDWGAFDLAGLLQI+QSGE IKACGC SL+ NDLR+F+RAGITVG H  DRGID+ CMTP VFCIPGTGGK DLTLVTTNKTIGKTLVEVYFL GRETAEVRSRLPGM KFYR  R+ KCFAN VNLFGGACGD
Sbjct:   16 KQYPFPLVTHGTRSRWLSMAFHKPCKFPITRYEGEYRPTWTRRWTTIGGKNGSWQFFSHARAILPDNNGESYTWEGEYGWFNLMRPMLAGPSNDWGAFDLAGLLQINQSGELIKACGCVSLKANDLRYFIRAGITVGAHCIDRGIDNLCMTPAVFCIPGTGGKFDLTLVTTNKTIGKTLVEVYFLCGRETAEVRSRLPGMHKFYRRARLKKCFANFVNLFGGACGD 241
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9762.31521.1 vs. uniprot
Match: Q8QNA8_ESV1K (EsV-1-179 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNA8_ESV1K)

HSP 1 Score: 392 bits (1006), Expect = 7.860e-137
Identity = 182/226 (80.53%), Postives = 193/226 (85.40%), Query Frame = 1 
Query:    4 LRKTIPVPLSGTRSRWLAMAFHKPCKFPITHYEGEYRPTWTQRWTRIGGENGSWQFFSHARDITPDNDGEPYTWEGEYGWYNLIRPMLAGPSNDWGAFDLAGLLQIDQSGEFIKACGCASLEENDLRFFVRAGITVGKHRNDRGIDHFCMTPDVFCIPGTGGKIDLTLVTTNKTIGKTLVEVYFLRGRETAEVRSRLPGMRKFYRAKRINKCFANIVNLFGGACGD 681
            L K    P     S WLAMA HKPCKFPIT YEGEYRPTWTQRWTRIGGE+GSWQFFSHARDITPD+DGEPYTWEGE+GWYNLIRPMLAGPSNDWGAFDLAGLLQI+Q GE IKACG  SL++NDL FF+RAGITVG +R D GID+ CMTP VFCIPG GGK DLTLVTTNK+IGKTLVEVYFL GRETAEVRSRLPGM KFYRA RI KCFA    +FGGACGD
Sbjct:    2 LTKNNTRPSRRMHSLWLAMARHKPCKFPITRYEGEYRPTWTQRWTRIGGESGSWQFFSHARDITPDDDGEPYTWEGEFGWYNLIRPMLAGPSNDWGAFDLAGLLQINQRGELIKACGWVSLKKNDLMFFIRAGITVGAYRKDHGIDNLCMTPAVFCIPGAGGKFDLTLVTTNKSIGKTLVEVYFLCGRETAEVRSRLPGMHKFYRAARIKKCFAYTAKIFGGACGD 227
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9762.31521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPJ8_ECTSI1.480e-14283.19EsV-1-179 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QNA8_ESV1K7.860e-13780.53EsV-1-179 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9762contigEcto-sp8_S_contig9762:5615..6298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size686
Hectar predicted targeting categorymitochondrion
Exons1
Cds size684
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145342.465214-CDS-Ecto-sp8_S_contig9762:5614..62981681145342.465214-CDS-Ecto-sp8_S_contig9762:5614..6298Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9762 5615..6298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9762.31521.1prot_Ecto-sp8_S_contig9762.31521.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9762 5615..6298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9762.31521.1

>prot_Ecto-sp8_S_contig9762.31521.1 ID=prot_Ecto-sp8_S_contig9762.31521.1|Name=mRNA_Ecto-sp8_S_contig9762.31521.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=228bp
CLRKTIPVPLSGTRSRWLAMAFHKPCKFPITHYEGEYRPTWTQRWTRIGG
ENGSWQFFSHARDITPDNDGEPYTWEGEYGWYNLIRPMLAGPSNDWGAFD
LAGLLQIDQSGEFIKACGCASLEENDLRFFVRAGITVGKHRNDRGIDHFC
MTPDVFCIPGTGGKIDLTLVTTNKTIGKTLVEVYFLRGRETAEVRSRLPG
MRKFYRAKRINKCFANIVNLFGGACGD*
back to top

mRNA from alignment at Ecto-sp8_S_contig9762:5615..6298-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9762.31521.1 ID=mRNA_Ecto-sp8_S_contig9762.31521.1|Name=mRNA_Ecto-sp8_S_contig9762.31521.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=684bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9762:5615..6298- (Ectocarpus species8 EcLAC_412)
TGTTTACGAAAAACAATACCCGTCCCCTTATCAGGCACGCGCAGTCGCTG
GCTAGCCATGGCTTTCCACAAGCCCTGTAAATTTCCAATCACCCACTACG
AAGGGGAGTATCGGCCTACGTGGACTCAACGCTGGACAAGGATTGGTGGC
GAAAATGGCTCCTGGCAATTCTTCAGCCACGCCCGTGACATAACACCTGA
TAACGACGGCGAACCATACACGTGGGAGGGCGAGTATGGCTGGTACAACC
TGATACGTCCAATGCTGGCCGGGCCGAGCAACGACTGGGGGGCGTTTGAC
TTGGCGGGACTCTTGCAAATCGATCAGAGTGGCGAATTCATCAAAGCTTG
TGGCTGCGCCTCGCTCGAGGAAAACGATTTGCGTTTTTTTGTCCGCGCTG
GAATAACAGTCGGCAAACATCGCAATGATCGCGGGATCGACCACTTCTGT
ATGACGCCGGATGTGTTTTGCATCCCCGGAACGGGTGGAAAGATCGACCT
GACGCTCGTGACCACGAACAAGACCATTGGCAAGACCCTCGTCGAGGTCT
ACTTCCTGCGCGGACGCGAGACGGCAGAAGTTCGGAGCCGACTCCCTGGA
ATGCGCAAGTTTTACCGTGCAAAGCGCATCAACAAATGTTTCGCCAATAT
TGTAAACCTTTTCGGTGGCGCGTGTGGAGATTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9762:5615..6298-

>mRNA_Ecto-sp8_S_contig9762.31521.1 ID=mRNA_Ecto-sp8_S_contig9762.31521.1|Name=mRNA_Ecto-sp8_S_contig9762.31521.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9762:5615..6298- (Ectocarpus species8 EcLAC_412)
TGTTTACGAAAAACAATACCCGTCCCCTTATCAGGCACGCGCAGTCGCTG
GCTAGCCATGGCTTTCCACAAGCCCTGTAAATTTCCAATCACCCACTACG
AAGGGGAGTATCGGCCTACGTGGACTCAACGCTGGACAAGGATTGGTGGC
GAAAATGGCTCCTGGCAATTCTTCAGCCACGCCCGTGACATAACACCTGA
TAACGACGGCGAACCATACACGTGGGAGGGCGAGTATGGCTGGTACAACC
TGATACGTCCAATGCTGGCCGGGCCGAGCAACGACTGGGGGGCGTTTGAC
TTGGCGGGACTCTTGCAAATCGATCAGAGTGGCGAATTCATCAAAGCTTG
TGGCTGCGCCTCGCTCGAGGAAAACGATTTGCGTTTTTTTGTCCGCGCTG
GAATAACAGTCGGCAAACATCGCAATGATCGCGGGATCGACCACTTCTGT
ATGACGCCGGATGTGTTTTGCATCCCCGGAACGGGTGGAAAGATCGACCT
GACGCTCGTGACCACGAACAAGACCATTGGCAAGACCCTCGTCGAGGTCT
ACTTCCTGCGCGGACGCGAGACGGCAGAAGTTCGGAGCCGACTCCCTGGA
ATGCGCAAGTTTTACCGTGCAAAGCGCATCAACAAATGTTTCGCCAATAT
TGTAAACCTTTTCGGTGGCGCGTGTGGAGATTAG
back to top