mRNA_Ecto-sp8_S_contig9752.31503.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9752.31503.1
Unique NamemRNA_Ecto-sp8_S_contig9752.31503.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9752.31503.1 vs. uniprot
Match: S4NTV0_9NEOP (La-related protein (Fragment) n=5 Tax=Pararge aegeria TaxID=116150 RepID=S4NTV0_9NEOP)

HSP 1 Score: 114 bits (286), Expect = 7.570e-31
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:    1 LFRFYSYGLERKFRPDLYRDFQTETMRDCDSGQLYGLEKFWAFMKYYSNAEELDVDPKLKTKLEPFNSIEDFKVLYP 231
            LFRFYSYGLERKFRP+LY+ FQ ET+ D + GQLYG+EKFWAF+KYY +A  L V+PKL+  L  F SIEDF+VL P
Sbjct:   14 LFRFYSYGLERKFRPELYQHFQAETLADYEKGQLYGIEKFWAFLKYYKHAAALQVEPKLQAHLAKFKSIEDFRVLEP 90
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BLAST of mRNA_Ecto-sp8_S_contig9752.31503.1 vs. uniprot
Match: A0A671KM57_9TELE (Uncharacterized protein n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671KM57_9TELE)

HSP 1 Score: 107 bits (267), Expect = 4.360e-28
Identity = 47/74 (63.51%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 LFRFYSYGLERKFRPDLYRDFQTETMRDCDSGQLYGLEKFWAFMKYYSNAEELDVDPKLKTKLEPFNSIEDFKV 222
            LFRFYSYGLERKFRPD+++DFQ ET++D ++GQLYGLEKFWAF+KY S  + +++DPKL+  L  F  +EDF+V
Sbjct:   30 LFRFYSYGLERKFRPDIFKDFQEETIKDYEAGQLYGLEKFWAFLKY-SKTKNMEIDPKLQEHLSKFKRLEDFRV 102
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BLAST of mRNA_Ecto-sp8_S_contig9752.31503.1 vs. uniprot
Match: A0A665X4M3_ECHNA (La ribonucleoprotein 1, translational regulator n=6 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665X4M3_ECHNA)

HSP 1 Score: 114 bits (284), Expect = 1.480e-27
Identity = 53/85 (62.35%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    1 LFRFYSYGLERKFRPDLYRDFQTETMRDCDSGQLYGLEKFWAFMKYYSNAEELDVDPKLKTKLEPFNSIEDFKVLYPPEELTRRR 255
            LFR+YSYGLE+KFRPD+++DFQ ETM+D ++GQLYGLEKFWAF+KY S A+ L++DPKL+  L  F  +EDF++  P EE  RRR
Sbjct:  936 LFRYYSYGLEKKFRPDIFKDFQEETMKDYEAGQLYGLEKFWAFLKY-SKAKNLEIDPKLQEFLSKFKRLEDFRIDPPMEEGRRRR 1019
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BLAST of mRNA_Ecto-sp8_S_contig9752.31503.1 vs. uniprot
Match: A0A8C3UTU5_CATUS (Uncharacterized protein n=1 Tax=Catharus ustulatus TaxID=91951 RepID=A0A8C3UTU5_CATUS)

HSP 1 Score: 103 bits (257), Expect = 8.420e-27
Identity = 46/74 (62.16%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 LFRFYSYGLERKFRPDLYRDFQTETMRDCDSGQLYGLEKFWAFMKYYSNAEELDVDPKLKTKLEPFNSIEDFKV 222
            LFR+YSYGLE+KFRPD+++DFQ ET++D ++GQLYGLEKFWAF+KY S A+ LD++ KL+  L  F  +EDF+V
Sbjct:   13 LFRYYSYGLEKKFRPDIFKDFQEETIKDYEAGQLYGLEKFWAFLKY-SKAKNLDINSKLQEYLSKFKRLEDFRV 85
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BLAST of mRNA_Ecto-sp8_S_contig9752.31503.1 vs. uniprot
Match: A0A3Q3LBI0_9LABR (Uncharacterized protein n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3LBI0_9LABR)

HSP 1 Score: 105 bits (261), Expect = 1.040e-26
Identity = 50/85 (58.82%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    1 LFRFYSYGLERKFRPDLYRDFQTETMRDCDSGQLYGLEKFWAFMKYYSNAEELDVDPKLKTKLEPFNSIEDFKVLYPPEELTRRR 255
            LFR+YSYGLE++FR DL++DFQ ET+RD + GQLYGLEKFWAF+KY S  +   +DPKL+  L  F ++EDF+V+ P E   RRR
Sbjct:   20 LFRYYSYGLEKRFRLDLFKDFQEETLRDFEKGQLYGLEKFWAFLKY-SRMKNQPIDPKLQEHLNKFKNLEDFRVVPPMEGGRRRR 103
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BLAST of mRNA_Ecto-sp8_S_contig9752.31503.1 vs. uniprot
Match: A0A8B9XA21_BOSMU (Uncharacterized protein n=1 Tax=Bos mutus grunniens TaxID=30521 RepID=A0A8B9XA21_BOSMU)

HSP 1 Score: 103 bits (258), Expect = 1.330e-26
Identity = 47/74 (63.51%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 LFRFYSYGLERKFRPDLYRDFQTETMRDCDSGQLYGLEKFWAFMKYYSNAEELDVDPKLKTKLEPFNSIEDFKV 222
            LFR+YSYGLE+KFR D+++DFQ ET++D ++GQLYGLEKFWAF+KY S A+ LD+DPKL+  L  F  +EDF+V
Sbjct:   18 LFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFLKY-SKAKNLDIDPKLQEYLGKFRRLEDFRV 90
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BLAST of mRNA_Ecto-sp8_S_contig9752.31503.1 vs. uniprot
Match: A0A3Q2TSV0_CHICK (Uncharacterized protein n=1 Tax=Gallus gallus TaxID=9031 RepID=A0A3Q2TSV0_CHICK)

HSP 1 Score: 103 bits (257), Expect = 1.520e-26
Identity = 46/74 (62.16%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 LFRFYSYGLERKFRPDLYRDFQTETMRDCDSGQLYGLEKFWAFMKYYSNAEELDVDPKLKTKLEPFNSIEDFKV 222
            LFR+YSYGLE+KFRPD+++DFQ ET++D ++GQLYGLEKFWAF+KY S A+ LD++ KL+  L  F  +EDF+V
Sbjct:   20 LFRYYSYGLEKKFRPDIFKDFQEETIKDYEAGQLYGLEKFWAFLKY-SKAKNLDINSKLQEYLSKFKRLEDFRV 92
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9752.31503.1 vs. uniprot
Match: A0A671KN36_9TELE (La-related protein 1-like n=2 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671KN36_9TELE)

HSP 1 Score: 110 bits (276), Expect = 1.770e-26
Identity = 51/85 (60.00%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    1 LFRFYSYGLERKFRPDLYRDFQTETMRDCDSGQLYGLEKFWAFMKYYSNAEELDVDPKLKTKLEPFNSIEDFKVLYPPEELTRRR 255
            LFRFYSYGLERKFRPD+++DFQ ET++D ++GQLYGLEKFWAF+KY S  + +++DPKL+  L  F  +EDF+V  P E+  R+R
Sbjct:  708 LFRFYSYGLERKFRPDIFKDFQEETIKDYEAGQLYGLEKFWAFLKY-SKTKNMEIDPKLQEHLSKFKRLEDFRVDPPMEDGGRKR 791
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9752.31503.1 vs. uniprot
Match: A0A671KTR6_9TELE (La-related protein 1-like n=4 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671KTR6_9TELE)

HSP 1 Score: 110 bits (276), Expect = 1.770e-26
Identity = 51/85 (60.00%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    1 LFRFYSYGLERKFRPDLYRDFQTETMRDCDSGQLYGLEKFWAFMKYYSNAEELDVDPKLKTKLEPFNSIEDFKVLYPPEELTRRR 255
            LFRFYSYGLERKFRPD+++DFQ ET++D ++GQLYGLEKFWAF+KY S  + +++DPKL+  L  F  +EDF+V  P E+  R+R
Sbjct:  692 LFRFYSYGLERKFRPDIFKDFQEETIKDYEAGQLYGLEKFWAFLKY-SKTKNMEIDPKLQEHLSKFKRLEDFRVDPPMEDGGRKR 775
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9752.31503.1 vs. uniprot
Match: A0A7F8PZL3_LEPWE (la-related protein 1 n=1 Tax=Leptonychotes weddellii TaxID=9713 RepID=A0A7F8PZL3_LEPWE)

HSP 1 Score: 103 bits (258), Expect = 2.810e-26
Identity = 47/74 (63.51%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 LFRFYSYGLERKFRPDLYRDFQTETMRDCDSGQLYGLEKFWAFMKYYSNAEELDVDPKLKTKLEPFNSIEDFKV 222
            LFR+YSYGLE+KFR D+++DFQ ET++D ++GQLYGLEKFWAF+KY S A+ LD+DPKL+  L  F  +EDF+V
Sbjct:   35 LFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFLKY-SKAKNLDIDPKLQEYLGKFRRLEDFRV 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9752.31503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
S4NTV0_9NEOP7.570e-3167.53La-related protein (Fragment) n=5 Tax=Pararge aege... [more]
A0A671KM57_9TELE4.360e-2863.51Uncharacterized protein n=1 Tax=Sinocyclocheilus a... [more]
A0A665X4M3_ECHNA1.480e-2762.35La ribonucleoprotein 1, translational regulator n=... [more]
A0A8C3UTU5_CATUS8.420e-2762.16Uncharacterized protein n=1 Tax=Catharus ustulatus... [more]
A0A3Q3LBI0_9LABR1.040e-2658.82Uncharacterized protein n=1 Tax=Labrus bergylta Ta... [more]
A0A8B9XA21_BOSMU1.330e-2663.51Uncharacterized protein n=1 Tax=Bos mutus grunnien... [more]
A0A3Q2TSV0_CHICK1.520e-2662.16Uncharacterized protein n=1 Tax=Gallus gallus TaxI... [more]
A0A671KN36_9TELE1.770e-2660.00La-related protein 1-like n=2 Tax=Sinocyclocheilus... [more]
A0A671KTR6_9TELE1.770e-2660.00La-related protein 1-like n=4 Tax=Sinocyclocheilus... [more]
A0A7F8PZL3_LEPWE2.810e-2663.51la-related protein 1 n=1 Tax=Leptonychotes weddell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9752contigEcto-sp8_S_contig9752:6861..7115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMammalia
Stop0
Start0
Seed ortholog score104.4
Seed ortholog evalue2.7e-20
Seed eggNOG ortholog59463.ENSMLUP00000002376
Preferred nameLARP1
Model size255
KEGG koko:K18757
Hectar predicted targeting categoryother localisation
GOsGO:0000339,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008190,GO:0008283,GO:0008494,GO:0009058,GO:0009059,GO:0009605,GO:0009719,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010494,GO:0010506,GO:0010508,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0014070,GO:0016239,GO:0016241,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0023052,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0031369,GO:0031667,GO:0031929,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0034248,GO:0034249,GO:0034250,GO:0034641,GO:0034645,GO:0035556,GO:0035690,GO:0035770,GO:0036464,GO:0038202,GO:0042221,GO:0042493,GO:0042594,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043487,GO:0043488,GO:0043489,GO:0043603,GO:0043604,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045069,GO:0045070,GO:0045182,GO:0045472,GO:0045727,GO:0045934,GO:0046677,GO:0048027,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070887,GO:0071236,GO:0071310,GO:0071362,GO:0071407,GO:0071417,GO:0071495,GO:0071704,GO:0072752,GO:0080090,GO:0090079,GO:0097159,GO:0097305,GO:0097306,GO:0097327,GO:1901355,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902369,GO:1902373,GO:1903311,GO:1903312,GO:1903900,GO:1903902,GO:1990904,GO:1990928,GO:2000112,GO:2000113
Exons1
EggNOG free text desc.La-related protein 1
EggNOG OGs38EPU@33154,3B9XE@33208,3CTZE@33213,3J3VM@40674,481MS@7711,48X7M@7742,4KRR8@9397,COG5193@1,KOG2590@2759
Cds size255
COG Functional cat.JO
Best tax levelChiroptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145341.4520814-CDS-Ecto-sp8_S_contig9752:6860..71151681145341.4520814-CDS-Ecto-sp8_S_contig9752:6860..7115Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9752 6861..7115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9752.31503.1prot_Ecto-sp8_S_contig9752.31503.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9752 6861..7115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9752.31503.1

>prot_Ecto-sp8_S_contig9752.31503.1 ID=prot_Ecto-sp8_S_contig9752.31503.1|Name=mRNA_Ecto-sp8_S_contig9752.31503.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=85bp
LFRFYSYGLERKFRPDLYRDFQTETMRDCDSGQLYGLEKFWAFMKYYSNA
EELDVDPKLKTKLEPFNSIEDFKVLYPPEELTRRR
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mRNA from alignment at Ecto-sp8_S_contig9752:6861..7115-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9752.31503.1 ID=mRNA_Ecto-sp8_S_contig9752.31503.1|Name=mRNA_Ecto-sp8_S_contig9752.31503.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=255bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9752:6861..7115- (Ectocarpus species8 EcLAC_412)
CTGTTCAGGTTTTACAGCTATGGTTTGGAGAGGAAATTCAGGCCAGACCT
GTACAGAGACTTTCAGACAGAGACTATGAGGGATTGTGACTCTGGGCAGC
TGTATGGGCTGGAGAAGTTCTGGGCTTTCATGAAGTACTACAGCAACGCT
GAAGAGCTGGACGTGGACCCCAAGTTAAAAACCAAGCTGGAGCCTTTCAA
CTCCATCGAGGACTTCAAAGTTTTGTATCCACCAGAGGAGCTTACACGTC
GCAGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9752:6861..7115-

>mRNA_Ecto-sp8_S_contig9752.31503.1 ID=mRNA_Ecto-sp8_S_contig9752.31503.1|Name=mRNA_Ecto-sp8_S_contig9752.31503.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9752:6861..7115- (Ectocarpus species8 EcLAC_412)
CTGTTCAGGTTTTACAGCTATGGTTTGGAGAGGAAATTCAGGCCAGACCT
GTACAGAGACTTTCAGACAGAGACTATGAGGGATTGTGACTCTGGGCAGC
TGTATGGGCTGGAGAAGTTCTGGGCTTTCATGAAGTACTACAGCAACGCT
GAAGAGCTGGACGTGGACCCCAAGTTAAAAACCAAGCTGGAGCCTTTCAA
CTCCATCGAGGACTTCAAAGTTTTGTATCCACCAGAGGAGCTTACACGTC
GCAGA
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