mRNA_Ecto-sp8_S_contig975.31497.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig975.31497.1
Unique NamemRNA_Ecto-sp8_S_contig975.31497.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig975.31497.1 vs. uniprot
Match: A0A6H5JAU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU8_9PHAE)

HSP 1 Score: 577 bits (1487), Expect = 1.060e-198
Identity = 376/455 (82.64%), Postives = 386/455 (84.84%), Query Frame = 1 
Query:    1 SGEVGMEGAVGSYVGDRELSGGASAMPVKAVTEASAGGGSGFTSCQLSPFLCETFLDGFVVGGEDAEALPATAAAA--APAFSMAASSSPPTFAGGHNVKTERSGRDKQEGDDGLLLARPGSSFSFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAFGGLPDSTATLYPGTPFDPTATGIPIPGIGGLESFSPSGYAAGFGSMSEGNDVGGGG--ILNPFSAASTSPVSFRRSDFGGGG--VLDDKLEFQGGVGMAGVVGETGVGSLKHDEQAFGLDKRLAAFRQQQQQQRMLGQVFHFRPNSAPAEATATSMLSSSSSLFGDADAAHKLRRAAAAISPGVFDMNVDGDGXXXXXXXXXXKGHKQDDVATSSVFGMSSDSDSSSGGDTLSSDGLTDELTGYGSEGWPDDGMENLEQFDVLAVFAFDDHFGIL 1347
            SGEVGMEGAVGSYVGDRELSGGASAMPVKA T+ASAGGGS FTSCQLSPFLCETFLDGFVVGG+D EALPA A     APAFSM A SSPPTFAGGHNVKT+R GRDK E DDGLLLARPGSSFS  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       VAAFG LPDSTATLYPGTPFDPTATGIPIPGIGGL SFSPSGYAAGFGS+ EGN VGGGG  ILNPFSAASTSPV FRRSDFGGG   VLDDKLEF  GVGMAG+VGE GVGSLKHDEQAFGLD RLAAFRQQQQQ RMLGQVFHFRP SA                FGD+ AAHKLRRAAAAISPG FDMN+DGDG          KGHKQDDV+TSSVFGM+SDS SSSGGDTLSSDGLTDEL GYGSEGWPDDGMENLEQFDVLA+FAFDDHFGIL
Sbjct:  279 SGEVGMEGAVGSYVGDRELSGGASAMPVKAATKASAGGGSSFTSCQLSPFLCETFLDGFVVGGDDVEALPAAAXXXXXAPAFSMNALSSPPTFAGGHNVKTKRFGRDKHERDDGLLLARPGSSFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA-----VAAFGSLPDSTATLYPGTPFDPTATGIPIPGIGGLGSFSPSGYAAGFGSIREGNGVGGGGGGILNPFSAASTSPVFFRRSDFGGGSGSVLDDKLEFPVGVGMAGIVGEAGVGSLKHDEQAFGLDTRLAAFRQQQQQ-RMLGQVFHFRPKSASXXXXXXXXXXXXXXXFGDSGAAHKLRRAAAAISPGAFDMNMDGDGSSSGGSSGS-KGHKQDDVSTSSVFGMTSDSGSSSGGDTLSSDGLTDELAGYGSEGWPDDGMENLEQFDVLALFAFDDHFGIL 726
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BLAST of mRNA_Ecto-sp8_S_contig975.31497.1 vs. uniprot
Match: D7G4J2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J2_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 8.880e-11
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 SGEVGMEGAVGSYVGDRELSGGASAMPVKAVTEASAGGGSGFTSCQLSPFLCE 159
            SGEVGME  VGSY GDRELSGGASAMPVKAVTEASAGGGSGFTS     ++C+
Sbjct:  326 SGEVGMEEEVGSYFGDRELSGGASAMPVKAVTEASAGGGSGFTS--WGSYVCD 376
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig975.31497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAU8_9PHAE1.060e-19882.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4J2_ECTSI8.880e-1179.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig975contigEcto-sp8_S_contig975:1..1748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score66.6
Seed ortholog evalue3.3e-08
Seed eggNOG ortholog2880.D7G4J2
Model size1350
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
EggNOG OGs2E7WS@1,2SEEY@2759
Cds size1335
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145340.9275246-UTR-Ecto-sp8_S_contig975:0..151681145340.9275246-UTR-Ecto-sp8_S_contig975:0..15Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig975 1..15 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145340.9396873-CDS-Ecto-sp8_S_contig975:15..1341681145340.9396873-CDS-Ecto-sp8_S_contig975:15..134Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig975 16..134 +
1681145340.9508772-CDS-Ecto-sp8_S_contig975:532..17481681145340.9508772-CDS-Ecto-sp8_S_contig975:532..1748Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig975 533..1748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig975.31497.1prot_Ecto-sp8_S_contig975.31497.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig975 16..1748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig975.31497.1

>prot_Ecto-sp8_S_contig975.31497.1 ID=prot_Ecto-sp8_S_contig975.31497.1|Name=mRNA_Ecto-sp8_S_contig975.31497.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=445bp
MEGAVGSYVGDRELSGGASAMPVKAVTEASAGGGSGFTSCQLSPFLCETF
LDGFVVGGEDAEALPATAAAAAPAFSMAASSSPPTFAGGHNVKTERSGRD
KQEGDDGLLLARPGSSFSFAAAATAAGYNAQQLLHQQQQQQQQQRLQQAQ
QQQQHQQQHRVLLSSGSAAVAAFGGLPDSTATLYPGTPFDPTATGIPIPG
IGGLESFSPSGYAAGFGSMSEGNDVGGGGILNPFSAASTSPVSFRRSDFG
GGGVLDDKLEFQGGVGMAGVVGETGVGSLKHDEQAFGLDKRLAAFRQQQQ
QQRMLGQVFHFRPNSAPAEATATSMLSSSSSLFGDADAAHKLRRAAAAIS
PGVFDMNVDGDGSSSRSSSSSSKGHKQDDVATSSVFGMSSDSDSSSGGDT
LSSDGLTDELTGYGSEGWPDDGMENLEQFDVLAVFAFDDHFGIL*
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mRNA from alignment at Ecto-sp8_S_contig975:1..1748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig975.31497.1 ID=mRNA_Ecto-sp8_S_contig975.31497.1|Name=mRNA_Ecto-sp8_S_contig975.31497.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1748bp|location=Sequence derived from alignment at Ecto-sp8_S_contig975:1..1748+ (Ectocarpus species8 EcLAC_412)
AGCGGTGAGGTCGGCATGGAAGGAGCAGTCGGCAGCTACGTCGGCGACCG
CGAGCTCAGCGGCGGCGCGAGCGCGATGCCCGTGAAGGCAGTCACGGAAG
CTTCCGCGGGTGGTGGCAGCGGTTTTACCAGCTGGTGAGAAACGCGGCAT
TTCTCGAATATTTTTATGGTGTCCTGATGTATTCACTCTGGAGGTGTGCA
CAAAATGTTTGTTGCTGGTACCTCCCCTTGCTTCCCCCTTTTGGTTCCAA
TGCTCGAAAGCTGTTCCGTTCCGACAAATGCTTCGCGTGCAAGTGAGACA
ATGGCGCTTTTCCACATACATGCTGCCTGTGTCTTATCGGCAAGGGGCAG
CTACGTTTGCGGCTGCTGTTCCCGTCGTGCGGAGAAATCGCCCAACTAAC
ACCCTTAGACAAAGACAATGGGGGGGGCGGTGTGTATGATGGAATAATGA
ATCTTGCGGCAACCACGCTGCCAGAGTCTTGGAAATGACCTCCCCTGTTG
TCGCTGCTGATGGTTGATCCCCTGCATGGCAGCCAACTCTCCCCGTTCCT
GTGCGAGACGTTCCTGGATGGGTTTGTCGTTGGCGGCGAAGACGCGGAAG
CTTTGCCGGCAACAGCAGCAGCAGCAGCCCCCGCGTTTTCGATGGCTGCC
TCGTCTTCGCCTCCCACCTTCGCCGGTGGGCACAACGTCAAGACCGAGCG
CTCCGGACGGGACAAGCAAGAAGGAGACGATGGTCTGCTCCTGGCCCGCC
CGGGGTCGTCGTTCTCGTTCGCCGCAGCCGCCACTGCTGCAGGGTACAAC
GCGCAGCAGTTGCTCCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCCT
GCAGCAGGCACAGCAACAGCAACAGCATCAGCAGCAGCACCGGGTGTTGC
TGTCGTCGGGATCGGCGGCCGTGGCCGCCTTCGGCGGCCTGCCGGATTCG
ACGGCCACGCTCTACCCCGGAACGCCGTTCGACCCGACCGCGACCGGGAT
TCCTATCCCCGGTATCGGAGGCCTCGAGTCTTTCTCTCCCAGTGGGTATG
CTGCTGGGTTCGGCTCCATGAGCGAGGGCAATGATGTCGGCGGCGGCGGC
ATTCTCAACCCCTTCTCCGCGGCGAGCACGAGCCCGGTGTCCTTTCGCCG
TTCCGACTTCGGCGGCGGCGGTGTGTTGGACGACAAGCTGGAGTTCCAGG
GAGGCGTTGGCATGGCGGGAGTTGTCGGCGAAACGGGCGTTGGAAGCCTC
AAGCACGACGAGCAGGCGTTCGGTCTGGACAAGCGCCTTGCGGCGTTCCG
CCAGCAGCAGCAGCAGCAGCGGATGCTGGGCCAAGTGTTTCACTTCCGAC
CCAACAGCGCTCCTGCGGAAGCCACCGCGACCAGCATGCTCTCGTCCTCT
TCTTCCTTGTTCGGCGACGCTGACGCTGCTCACAAGTTGCGGCGGGCGGC
GGCGGCAATCTCTCCGGGTGTCTTCGACATGAACGTGGATGGCGACGGCA
GCAGCAGCAGGAGCAGCAGCAGCAGCAGCAAGGGCCACAAGCAAGACGAT
GTCGCCACCAGCAGCGTCTTCGGCATGTCGAGCGACAGCGACAGCAGCAG
CGGTGGAGACACGCTGTCCTCGGATGGCCTGACGGACGAGTTGACCGGGT
ACGGGTCGGAGGGATGGCCGGACGACGGCATGGAGAACCTGGAGCAGTTC
GACGTCCTCGCGGTGTTCGCTTTCGACGATCACTTTGGCATACTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig975:1..1748+

>mRNA_Ecto-sp8_S_contig975.31497.1 ID=mRNA_Ecto-sp8_S_contig975.31497.1|Name=mRNA_Ecto-sp8_S_contig975.31497.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1335bp|location=Sequence derived from alignment at Ecto-sp8_S_contig975:1..1748+ (Ectocarpus species8 EcLAC_412)
ATGGAAGGAGCAGTCGGCAGCTACGTCGGCGACCGCGAGCTCAGCGGCGG
CGCGAGCGCGATGCCCGTGAAGGCAGTCACGGAAGCTTCCGCGGGTGGTG
GCAGCGGTTTTACCAGCTGCCAACTCTCCCCGTTCCTGTGCGAGACGTTC
CTGGATGGGTTTGTCGTTGGCGGCGAAGACGCGGAAGCTTTGCCGGCAAC
AGCAGCAGCAGCAGCCCCCGCGTTTTCGATGGCTGCCTCGTCTTCGCCTC
CCACCTTCGCCGGTGGGCACAACGTCAAGACCGAGCGCTCCGGACGGGAC
AAGCAAGAAGGAGACGATGGTCTGCTCCTGGCCCGCCCGGGGTCGTCGTT
CTCGTTCGCCGCAGCCGCCACTGCTGCAGGGTACAACGCGCAGCAGTTGC
TCCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCCTGCAGCAGGCACAG
CAACAGCAACAGCATCAGCAGCAGCACCGGGTGTTGCTGTCGTCGGGATC
GGCGGCCGTGGCCGCCTTCGGCGGCCTGCCGGATTCGACGGCCACGCTCT
ACCCCGGAACGCCGTTCGACCCGACCGCGACCGGGATTCCTATCCCCGGT
ATCGGAGGCCTCGAGTCTTTCTCTCCCAGTGGGTATGCTGCTGGGTTCGG
CTCCATGAGCGAGGGCAATGATGTCGGCGGCGGCGGCATTCTCAACCCCT
TCTCCGCGGCGAGCACGAGCCCGGTGTCCTTTCGCCGTTCCGACTTCGGC
GGCGGCGGTGTGTTGGACGACAAGCTGGAGTTCCAGGGAGGCGTTGGCAT
GGCGGGAGTTGTCGGCGAAACGGGCGTTGGAAGCCTCAAGCACGACGAGC
AGGCGTTCGGTCTGGACAAGCGCCTTGCGGCGTTCCGCCAGCAGCAGCAG
CAGCAGCGGATGCTGGGCCAAGTGTTTCACTTCCGACCCAACAGCGCTCC
TGCGGAAGCCACCGCGACCAGCATGCTCTCGTCCTCTTCTTCCTTGTTCG
GCGACGCTGACGCTGCTCACAAGTTGCGGCGGGCGGCGGCGGCAATCTCT
CCGGGTGTCTTCGACATGAACGTGGATGGCGACGGCAGCAGCAGCAGGAG
CAGCAGCAGCAGCAGCAAGGGCCACAAGCAAGACGATGTCGCCACCAGCA
GCGTCTTCGGCATGTCGAGCGACAGCGACAGCAGCAGCGGTGGAGACACG
CTGTCCTCGGATGGCCTGACGGACGAGTTGACCGGGTACGGGTCGGAGGG
ATGGCCGGACGACGGCATGGAGAACCTGGAGCAGTTCGACGTCCTCGCGG
TGTTCGCTTTCGACGATCACTTTGGCATACTCTAA
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