mRNA_Ecto-sp8_S_contig97444.31484.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97444.31484.1
Unique NamemRNA_Ecto-sp8_S_contig97444.31484.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig97444.31484.1 vs. uniprot
Match: A0A6H5JMN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMN5_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.380e-32
Identity = 76/83 (91.57%), Postives = 78/83 (93.98%), Query Frame = 2 
Query:    2 LMAGEKRQQREPGADGGPTLDQCLVLPSGIALKIDGLLSTSGTERECGVSIGNG--AGGSDADRXXXXXXXXXXSSNSLEKDG 244
            LMAGEKRQQREPGADGGPTLDQCLVLPSG+ALKIDGLLSTSG ERECGVSIGNG  AGG+D DRXXXXXXXXX SSNSLEKDG
Sbjct:  135 LMAGEKRQQREPGADGGPTLDQCLVLPSGVALKIDGLLSTSGAERECGVSIGNGDGAGGADVDRXXXXXXXXXGSSNSLEKDG 217
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BLAST of mRNA_Ecto-sp8_S_contig97444.31484.1 vs. uniprot
Match: D7FM99_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM99_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.350e-30
Identity = 76/83 (91.57%), Postives = 78/83 (93.98%), Query Frame = 2 
Query:    2 LMAGEKRQQREPGADGGPTLDQCLVLPSGIALKIDGLLSTSGTERECGVSIGNG--AGGSDADRXXXXXXXXXXSSNSLEKDG 244
            LMAGEKRQQREPGA+GGPTLDQCLVLPSG ALKIDGLLSTSG ERECGVSIGNG  AGG+DADRXXXXXXXXXX SNSLEKDG
Sbjct:   32 LMAGEKRQQREPGANGGPTLDQCLVLPSGGALKIDGLLSTSGAERECGVSIGNGDGAGGADADRXXXXXXXXXXXSNSLEKDG 114
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97444.31484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMN5_9PHAE2.380e-3291.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM99_ECTSI1.350e-3091.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97444contigEcto-sp8_S_contig97444:210..453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size246
Hectar predicted targeting categoryother localisation
Exons1
Cds size240
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145340.0986516-UTR-Ecto-sp8_S_contig97444:209..2131681145340.0986516-UTR-Ecto-sp8_S_contig97444:209..213Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig97444 210..213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145340.1105063-CDS-Ecto-sp8_S_contig97444:213..4531681145340.1105063-CDS-Ecto-sp8_S_contig97444:213..453Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97444 214..453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97444.31484.1prot_Ecto-sp8_S_contig97444.31484.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97444 214..453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97444.31484.1

>prot_Ecto-sp8_S_contig97444.31484.1 ID=prot_Ecto-sp8_S_contig97444.31484.1|Name=mRNA_Ecto-sp8_S_contig97444.31484.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=80bp
MAGEKRQQREPGADGGPTLDQCLVLPSGIALKIDGLLSTSGTERECGVSI
GNGAGGSDADRGGGDDDRGNGSSNSLEKDG
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mRNA from alignment at Ecto-sp8_S_contig97444:210..453+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97444.31484.1 ID=mRNA_Ecto-sp8_S_contig97444.31484.1|Name=mRNA_Ecto-sp8_S_contig97444.31484.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=244bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97444:210..453+ (Ectocarpus species8 EcLAC_412)
GTTGATGGCCGGCGAGAAACGGCAACAACGTGAGCCGGGAGCAGACGGGG
GGCCGACTCTCGATCAGTGCCTTGTCCTCCCCTCTGGGATAGCGCTGAAG
ATCGACGGGCTACTCTCTACGTCTGGCACGGAGAGAGAATGTGGCGTCAG
CATCGGTAACGGTGCTGGTGGCTCAGATGCCGACAGGGGTGGTGGTGACG
ACGATCGGGGAAACGGTTCGAGCAACAGCTTGGAAAAAGACGGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97444:210..453+

>mRNA_Ecto-sp8_S_contig97444.31484.1 ID=mRNA_Ecto-sp8_S_contig97444.31484.1|Name=mRNA_Ecto-sp8_S_contig97444.31484.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97444:210..453+ (Ectocarpus species8 EcLAC_412)
ATGGCCGGCGAGAAACGGCAACAACGTGAGCCGGGAGCAGACGGGGGGCC
GACTCTCGATCAGTGCCTTGTCCTCCCCTCTGGGATAGCGCTGAAGATCG
ACGGGCTACTCTCTACGTCTGGCACGGAGAGAGAATGTGGCGTCAGCATC
GGTAACGGTGCTGGTGGCTCAGATGCCGACAGGGGTGGTGGTGACGACGA
TCGGGGAAACGGTTCGAGCAACAGCTTGGAAAAAGACGGA
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