mRNA_Ecto-sp8_S_contig9735.31469.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9735.31469.1
Unique NamemRNA_Ecto-sp8_S_contig9735.31469.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9735.31469.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.510e-23
Identity = 58/94 (61.70%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:   88 YASCEQGKDKSSAHHEISRCLQRTDSREKLINSFVDDAVGNPVSVKLAVVRRIPQSNPGVAIYVDPGVSAVSPGTCDESPWSDQRSL*GSEAGE 369
            YA CEQGKDKSS HHEIS  LQRTD+RE LI +F D   G P  V+L V  RI  SNPGVA+YV+PGVS + P T D S  S Q S  GS+AGE
Sbjct: 1048 YACCEQGKDKSSTHHEISSYLQRTDNRETLIGAFNDGVPGYPAPVRLVVTGRIAASNPGVAVYVEPGVSVICPRTSDPSSSSGQGSPQGSDAGE 1141
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BLAST of mRNA_Ecto-sp8_S_contig9735.31469.1 vs. uniprot
Match: D7FZ29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ29_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 8.660e-21
Identity = 59/103 (57.28%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:   88 YASCEQGKDKSSAHHEISRCLQRTDSREKLINSFVDDAVGNPVSVKLAVVRRIPQSNPGVAIYVDPGVSAVSPGTCDESPWSDQRSL*GSEAG---ELSGPEV 387
            YA CEQGKDKSSAHHEIS  LQRTD+RE LI +F D   G    V+L V  RI  SNPGVA+ VDPGVS + P T   S  S Q S  GS+AG   E  G +V
Sbjct:  547 YACCEQGKDKSSAHHEISSYLQRTDNRETLIGAFNDGVPGYHAPVRLVVTGRIAASNPGVAVCVDPGVSVICPQTSGPSSLSGQGSPEGSDAGGGEEYVGSDV 649
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9735.31469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK41_9PHAE2.510e-2361.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ29_ECTSI8.660e-2157.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9735contigEcto-sp8_S_contig9735:4564..6856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size895
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145338.9962401-UTR-Ecto-sp8_S_contig9735:4563..51061681145338.9962401-UTR-Ecto-sp8_S_contig9735:4563..5106Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9735 4564..5106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145339.0123289-CDS-Ecto-sp8_S_contig9735:5106..53981681145339.0123289-CDS-Ecto-sp8_S_contig9735:5106..5398Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9735 5107..5398 -
1681145339.0262997-CDS-Ecto-sp8_S_contig9735:6797..68561681145339.0262997-CDS-Ecto-sp8_S_contig9735:6797..6856Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9735 6798..6856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9735.31469.1prot_Ecto-sp8_S_contig9735.31469.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9735 5107..6856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9735.31469.1

>prot_Ecto-sp8_S_contig9735.31469.1 ID=prot_Ecto-sp8_S_contig9735.31469.1|Name=mRNA_Ecto-sp8_S_contig9735.31469.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=117bp
AERLFPRKSSSSVTAPNAHSRSLVPSVLQYASCEQGKDKSSAHHEISRCL
QRTDSREKLINSFVDDAVGNPVSVKLAVVRRIPQSNPGVAIYVDPGVSAV
SPGTCDESPWSDQRSL*
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mRNA from alignment at Ecto-sp8_S_contig9735:4564..6856-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9735.31469.1 ID=mRNA_Ecto-sp8_S_contig9735.31469.1|Name=mRNA_Ecto-sp8_S_contig9735.31469.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2293bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9735:4564..6856- (Ectocarpus species8 EcLAC_412)
GCCGAAAGACTTTTCCCTCGCAAAAGCAGCTCATCGGTGACAGCTCCAAA
CGCTCACAGGTGAGGCCCTGCGCTCGTGTGGGCATGCTACGGTAGTGTTT
AGACGCAGCAGAGTTCTTCTCGCAGCCCCCAGGGGTCCACGCCACGAGTA
AGCGTGCTCGCTTGCATTTGAGGATGTTGTCACGCTCCAAAAAAAAAATA
CAGACAGCAAAAATTGGGAAGCCCGCACATCTACAGCGGTAGCTCCCTGC
CGCTTAGCCGCAGCACAACTCTAAACGGCCACAGGTCAGACCCCGGGCTT
TGTGCACATGCGTCGTCAGTGTGTAGGCATAGCAGGGTGGGGTTGGACCG
CCTGTAGGTTCCACAGCAGCGCTCGTTTGGTCGCATGGCGACGTGTTGTT
GTCAAGACCAGAGGAGGGTCAAACACGAACAACATTCCGCCGCCGCCGCT
GCTGCCAGCGTCATGGTTCCTCCTCTCCTCTCCTCCTCTCCTCCTTCCTC
CTGAACTGACACCATGATTCACTACGCATCATCACCACATGTGCATGTTG
CGTTTAGCATGGTCGTGGTTAGCGCGTGTGTGCATTTCGTCTGCTGTTGT
GCTGCCGCCATAAGAAGAGGAGGCCGAAGTTCGTCTTTTTTGGGGGGCGC
CTCAGGCTGCCTCTATTGTTCGTTACTGCTGCTGTACTGTATGTAGTACA
GAACCGGCCCGCACTTAAGAATATGGTAGTTAAGAATTTGAGCCTCAAAA
AAATCAAAACTTAAGAACTTGAGCACATTTGAGATGCCCGGATTAGAACC
TCTACACTAAAACCTATATAAAGTAATATGTGGGCGGAAAATTTCCCCCC
AGAGAAATAAGAACCCGAGCCTCGCTCAAAATAGGATGTTCTTAAGTGCG
GGCCGGTTCTGTACAGCAGGTATGTTTTTTCAGCAGCAAGCAGCAGAGGC
AGCAACACTGCTGTATCCACAGCCCGCATAGCTAATCGATAGATACCGCC
GTACCATGCCTGCCTGGCAGCGTGGTAGGGTTTCTCCGGCCTTGGGTTGA
TGGGGAGTTAGTTTTGTGTGGCGTAAGGAACATGAAAAAAAATCATAACG
GTGTACTGCTGTAGCATGCGCGTGTTGTTTGTTATGTACATAGCAACGTA
CAACAACACAGCGGCATGATAGCAGGACCAAATACCGCATGCTAGCGGAC
CTGCGCTGCGTGTTCTTTTGCTTTGCGACCTCGCAGCCGATTGGGCCTTG
TTTACTTTAATGATCAGCGGAGGGCATTTCTACCTTCACAACACCGCGAA
AAGCAAGGGCAGCACCCATTTTTCATTTAGCGACTGTGCTCACAGTCTGA
TGTTTCAAGTGTGGATCCCGAGGTCCTTCGCGGCTTCTCACAACCCCCCT
GTGGTCCCGTTCCCAACCCCCCCCCCCTGTGATTCCATTCCCTGCCCCGG
GTTGAAAGTCGTAGCCTGGTGCCCAGCGTACTACAGTACGCCTCCTGCGA
ACAAGGCAAGGACAAGAGCAGCGCGCATCACGAGATCTCCAGATGTCTTC
AAAGGACGGACAGTCGCGAGAAGCTGATTAACTCTTTTGTCGACGACGCA
GTGGGAAACCCTGTGTCAGTTAAGCTCGCTGTAGTCAGACGAATCCCTCA
ATCCAATCCAGGAGTTGCCATCTACGTTGACCCTGGTGTGAGTGCCGTCT
CTCCCGGGACATGTGACGAAAGTCCTTGGTCAGACCAACGGTCGTTGTAA
GGGTCGGAAGCAGGAGAACTTTCGGGACCTGAGGTGGATATGGCGCCAAA
TGTGTGACCCTGGGTCCTTCGTCACAATTTTGCCACGTTTCGTGTGTCTG
AGCATCATAGTGGTGCATGTATTTCTTTTTTTTCTGTTCCTGGGATAGGG
TGAGGCCAACGTCTGCTGCACATGCTTCCTTGGCGATAGAAGGGATGCGA
ACAGTGTGGTGTCTACTGGTGCTCAGCGGAAGAGAAAGATGGGGGGGGCA
CAGTTAATTAAAACTCAGATTGTTCTTTCAGCCTCCGTGGGGTGACATCG
AATGGTGCTGGCAAGGAAATCAGCTATGTCGCGAGATAATTGCTCTCTCG
CGGGAGATTGACACTGCTCACAGGATGTGGAAGACCCAGTGGTATCTTGG
CGGGATCTCCAACAAGCAGCTAGGCTTGTACAGAAAAAAGAAAATTGAGC
GAATCCCGGCTTCGGGATATCGCAGCCCGAAGCATTCGAAGCATTCGAAG
CATTCGAAGCATTTATGATCACGGGATTGATCTCTCGTACTGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9735:4564..6856-

>mRNA_Ecto-sp8_S_contig9735.31469.1 ID=mRNA_Ecto-sp8_S_contig9735.31469.1|Name=mRNA_Ecto-sp8_S_contig9735.31469.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9735:4564..6856- (Ectocarpus species8 EcLAC_412)
GCCGAAAGACTTTTCCCTCGCAAAAGCAGCTCATCGGTGACAGCTCCAAA
CGCTCACAGTCGTAGCCTGGTGCCCAGCGTACTACAGTACGCCTCCTGCG
AACAAGGCAAGGACAAGAGCAGCGCGCATCACGAGATCTCCAGATGTCTT
CAAAGGACGGACAGTCGCGAGAAGCTGATTAACTCTTTTGTCGACGACGC
AGTGGGAAACCCTGTGTCAGTTAAGCTCGCTGTAGTCAGACGAATCCCTC
AATCCAATCCAGGAGTTGCCATCTACGTTGACCCTGGTGTGAGTGCCGTC
TCTCCCGGGACATGTGACGAAAGTCCTTGGTCAGACCAACGGTCGTTGTA
A
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