mRNA_Ecto-sp8_S_contig9726.31459.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9726.31459.1
Unique NamemRNA_Ecto-sp8_S_contig9726.31459.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9726.31459.1 vs. uniprot
Match: D8LJ93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ93_ECTSI)

HSP 1 Score: 701 bits (1810), Expect = 1.540e-250
Identity = 429/506 (84.78%), Postives = 434/506 (85.77%), Query Frame = 1
Query:   16 MGAAGSVGVVDPAALRKEYEAMAAKDVGDEELLNHMKKLIISPQTGAVDKAKTKEAAPNVEGTRRSSVRRSSAAASEVDSAAAAGPKARRGSGGIAASGVKGGTAGSTARRGXASRPLSHNSRXXXXXXXXXXXXXXXXXXXXX-SSVDGDRPLSAPQTKPPIPKQRPRSSLGEKNDGSGKPTKSRRRSYLGQPTAGQGGNAVGAAAAVAVDAAAAVDGTAPAQDEPVKXXXXQDVEDMKIDSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSPAHAPPAEGSNPPPEPTMDSITIYSGSKLFWRTGLNVEMFMQQHKTANNVVQAMIFDASTYQELAQVWVCWSAVVANLDAKEMKKEMDAAERAFHNLGMKPTPENVLAEATRKAAVSFIIKRIQVDRDESREEAGGPAVSHKVSMLQMAADEDGMQLLVEKPEGVNDTFSRAMTKRASIQEVAEVMTSLRKSLGDVNTAAQAAAASLVGATGTVEQGRRGSXXXXXRASIQGS 1530
            MGAAGSVGVVDP ALRKEYEAMAA+DVGDEELLNHMKKLIISP+T A DK KTKE APNVEGTRRSSVRR+S  A  VDSAA AGPKARRGSGGIAASGV+GG AGSTARRGXASRPLSHNSRXXXXXXXXXXXXXXXXXXXXX SSVDGDRPLSAPQTKPP+PKQRPRSSLGEKNDGSGKPTKSRRRSYLGQPTAGQGG AVGAAAA            APAQDE   XXXX  VEDMKIDSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSP HAPPAEGSNPPPEPTMDSITIYSGSKLFWRT LNVEMFMQQHKTANNVVQ                                  MDAAERAFHNLGMKPTPENV AEATRKAAVSFIIKRIQVDRDES EEAGGPAVSHKVSMLQMAADEDGMQLLVEKPEGVNDTFSRAMTKRASIQEVAEVMTSLRKSLGDVNTAAQAAAASLVGATGTVEQGRRGS X   RASIQGS
Sbjct:    1 MGAAGSVGVVDPTALRKEYEAMAAQDVGDEELLNHMKKLIISPKTEAADKPKTKETAPNVEGTRRSSVRRNSGPAPGVDSAAVAGPKARRGSGGIAASGVEGGAAGSTARRGXASRPLSHNSRXXXXXXXXXXXXXXXXXXXXXRSSVDGDRPLSAPQTKPPVPKQRPRSSLGEKNDGSGKPTKSRRRSYLGQPTAGQGGVAVGAAAAXXXXXXXXXXXXAPAQDEXXXXXXXXXVEDMKIDSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSPVHAPPAEGSNPPPEPTMDSITIYSGSKLFWRTRLNVEMFMQQHKTANNVVQ----------------------------------MDAAERAFHNLGMKPTPENVQAEATRKAAVSFIIKRIQVDRDESPEEAGGPAVSHKVSMLQMAADEDGMQLLVEKPEGVNDTFSRAMTKRASIQEVAEVMTSLRKSLGDVNTAAQAAAASLVGATGTVEQGRRGSVXVARRASIQGS 472          
BLAST of mRNA_Ecto-sp8_S_contig9726.31459.1 vs. uniprot
Match: A0A6H5K5G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G4_9PHAE)

HSP 1 Score: 590 bits (1520), Expect = 1.510e-207
Identity = 348/488 (71.31%), Postives = 361/488 (73.98%), Query Frame = 1
Query:   16 MGAAGSVGVVDPAALRKEYEAMAAKDVGDEELLNHMKKLIISPQTGAVDKAKTKEAAPNVEGTRRSSVRRSSAAASEVDSAAAAGPKARRGSGGIAASGVKGGTAGSTARRGXASRPLSHNSRXXXXXXXXXXXXXXXXXXXXXSSVDGDRPLSAPQTKPPIPKQRPRSSLGEKNDGSGKPTKSRRRSYLGQPTAGQGGNAVGAAAAVAVDAAAAVDGTAPAQDEPVKXXXXQDVEDMKIDSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSPAHAPPAEGSNPPPEPTMDSITIYSGSKLFWRTGLNVEMFMQQHKTANNVVQAMIFDASTYQELAQVWVCWSAVVANLDAKEMKKEMDAAERAFHNLGMKPTPENVLAEATRKAAVSFIIKRIQVDRDESREEAGGPAVSHKVSMLQMAADEDGMQLLVEKPEGVNDTFSRAMTKRASIQEVAEVMTSLRKSLGDVNTAAQAAAASLVGATGTVEQ 1479
            MGAAGSVGVVDPA LRKEYEAMAAK+VGDEELLNHMKKLIISPQ+G                 RR+S                                         ARR                                 SSVD DRPLSAPQTKPP+PKQRPRSSLGE+NDGSGKPTKSRRRSYLGQP    GG+AVGAAAAVAVDA+AAVDG APAQDE   XXXX DV+D+K DSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSPAHAPPAEGSNPPPEPTMDSITIYSGSKLFWRT LNVEMFMQQHKTANNVV                WV WSAVVA LDAKEMK EMDAAERAFHNLGMKPTPENV AEATRKAAVSFIIKRIQVDR++S EEAGGPAVSHKVSMLQMAADEDGMQLL+EKPEGVNDTFSRAM+KRASIQEVAEVM SLRKSLGDVNTAAQAAAASL GATGTVEQ
Sbjct:    1 MGAAGSVGVVDPAVLRKEYEAMAAKEVGDEELLNHMKKLIISPQSGQ----------------RRAS----------------------------------------NARR---------------------------------SSVDSDRPLSAPQTKPPVPKQRPRSSLGEENDGSGKPTKSRRRSYLGQP----GGDAVGAAAAVAVDASAAVDGAAPAQDEXXXXXXXXDVQDIKTDSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSPAHAPPAEGSNPPPEPTMDSITIYSGSKLFWRTRLNVEMFMQQHKTANNVV----------------WVSWSAVVAKLDAKEMKNEMDAAERAFHNLGMKPTPENVQAEATRKAAVSFIIKRIQVDREDSPEEAGGPAVSHKVSMLQMAADEDGMQLLMEKPEGVNDTFSRAMSKRASIQEVAEVMASLRKSLGDVNTAAQAAAASLDGATGTVEQ 379          
BLAST of mRNA_Ecto-sp8_S_contig9726.31459.1 vs. uniprot
Match: A0A7S3H489_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H489_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.410e-11
Identity = 53/186 (28.49%), Postives = 91/186 (48.92%), Query Frame = 1
Query:  733 IDSWESVSQQPSCPLCHMVFSTEGKRDQHIKYSPAHAPPAEGSNPPPEPTMDSIT---------------------IYSGSKLFWRTGLNVEMFMQQHKTANNVVQAMIFDASTYQELAQVWVCWSAVVANLDAK-----EMKKEMDAAERAFHNLGMKPTPENVLAE-ATRKAAVSFIIKRIQVD 1209
            +DSW+SV+ QP C  C M F ++   D+H+K+S  HA   E +        + IT                     +Y+GSK FWRT +N+E+ M  H     V++ + FD     E  ++++ +  + + L+       E  K  + AE+ FH+ G +   E+VL E    +  V++I++R+Q+D
Sbjct:  142 VDSWDSVTHQPFCTTCQMAFKSQDFLDRHVKFSDLHAKNLEKAKGVIAVDKNPITSTDAGVGMVQQSQVEGVHYKLLYTGSKFFWRTQMNIEIDMYLHLLPY-VIEVISFDPIKDHEATRIYLNYYTIQSTLEKLVSSDLEAAKLKELAEQRFHSHGEEA--ESVLREHLLLQRVVTYILQRLQLD 324          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9726.31459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJ93_ECTSI1.540e-25084.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5G4_9PHAE1.510e-20771.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3H489_9STRA1.410e-1128.49Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9726contigEcto-sp8_S_contig9726:1856..7081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1533
Hectar predicted targeting categoryother localisation
Exons9
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_005240.1
Cds size1518
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9726.31459.1prot_Ecto-sp8_S_contig9726.31459.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9726 1871..7081 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145338.0511706-UTR-Ecto-sp8_S_contig9726:1855..18701681145338.0511706-UTR-Ecto-sp8_S_contig9726:1855..1870Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9726 1856..1870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145338.0688927-CDS-Ecto-sp8_S_contig9726:1870..20061681145338.0688927-CDS-Ecto-sp8_S_contig9726:1870..2006Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9726 1871..2006 +
1681145338.0810306-CDS-Ecto-sp8_S_contig9726:2520..27941681145338.0810306-CDS-Ecto-sp8_S_contig9726:2520..2794Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9726 2521..2794 +
1681145338.0956638-CDS-Ecto-sp8_S_contig9726:3387..35561681145338.0956638-CDS-Ecto-sp8_S_contig9726:3387..3556Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9726 3388..3556 +
1681145338.1081424-CDS-Ecto-sp8_S_contig9726:3748..39241681145338.1081424-CDS-Ecto-sp8_S_contig9726:3748..3924Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9726 3749..3924 +
1681145338.119965-CDS-Ecto-sp8_S_contig9726:4222..44431681145338.119965-CDS-Ecto-sp8_S_contig9726:4222..4443Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9726 4223..4443 +
1681145338.134267-CDS-Ecto-sp8_S_contig9726:4791..48891681145338.134267-CDS-Ecto-sp8_S_contig9726:4791..4889Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9726 4792..4889 +
1681145338.1487486-CDS-Ecto-sp8_S_contig9726:5226..55041681145338.1487486-CDS-Ecto-sp8_S_contig9726:5226..5504Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9726 5227..5504 +
1681145338.1607654-CDS-Ecto-sp8_S_contig9726:6320..64321681145338.1607654-CDS-Ecto-sp8_S_contig9726:6320..6432Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9726 6321..6432 +
1681145338.1752613-CDS-Ecto-sp8_S_contig9726:7027..70811681145338.1752613-CDS-Ecto-sp8_S_contig9726:7027..7081Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9726 7028..7081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9726.31459.1

>prot_Ecto-sp8_S_contig9726.31459.1 ID=prot_Ecto-sp8_S_contig9726.31459.1|Name=mRNA_Ecto-sp8_S_contig9726.31459.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=506bp
MGAAGSVGVVDPAALRKEYEAMAAKDVGDEELLNHMKKLIISPQTGAVDK
AKTKEAAPNVEGTRRSSVRRSSAAASEVDSAAAAGPKARRGSGGIAASGV
KGGTAGSTARRGSASRPLSHNSRLSQSSSSTQASQQRRASNARRSSVDGD
RPLSAPQTKPPIPKQRPRSSLGEKNDGSGKPTKSRRRSYLGQPTAGQGGN
AVGAAAAVAVDAAAAVDGTAPAQDEPVKDEPAQDVEDMKIDSWESVSQQP
SCPLCHMVFSTEGKRDQHIKYSPAHAPPAEGSNPPPEPTMDSITIYSGSK
LFWRTGLNVEMFMQQHKTANNVVQAMIFDASTYQELAQVWVCWSAVVANL
DAKEMKKEMDAAERAFHNLGMKPTPENVLAEATRKAAVSFIIKRIQVDRD
ESREEAGGPAVSHKVSMLQMAADEDGMQLLVEKPEGVNDTFSRAMTKRAS
IQEVAEVMTSLRKSLGDVNTAAQAAAASLVGATGTVEQGRRGSVEVARRA
SIQGS*
back to top

mRNA from alignment at Ecto-sp8_S_contig9726:1856..7081+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9726.31459.1 ID=mRNA_Ecto-sp8_S_contig9726.31459.1|Name=mRNA_Ecto-sp8_S_contig9726.31459.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5226bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9726:1856..7081+ (Ectocarpus species8 EcLAC_412)
GGTTGTGGGAGGACGATGGGAGCCGCGGGGTCTGTCGGTGTCGTCGACCC CGCAGCCCTGCGAAAAGAGTATGAAGCTATGGCGGCTAAGGACGTCGGGG ACGAGGAACTCCTTAACCACATGAAGAAGCTCATTATATCTCCGCAAACA GGTGGGCGCATTGGTCAGCACTTTCCTGCGGTCGTCGACGGCATAGCAGT CGGTCTCGCGATGCAAGAAGTGCACGAGGCATCGTCAAGTATTTGAATCC CCGCACAAGATTGATCATGGTCGTAGCGGCTGGCCTCCGTGCAACTGTGC CCTTCTTCTTCGCCACAGCCTCCAACCACCTTTTGCAAGAACTGCGTAGC ACTTTGCGGCGTGAAAGAGAACTAAAAGGTGTGTCTAGACTTTTTGATGG GCGTACCACTCGGGGCTGTCTCCTGTTCTTGTCATAATGAAGCGTCATTT GTGCCGGCCTTACAAGTTGAAGGAAGAGCACCACTTGGTAGAGGTTGTTG TGATGCTGAGTGCGTTACCCGAGGTGTGGGTCTTGCATTCTCCGCCATGT CCGACTTCGCGGCTGGCTAGATTATGTATGAACGCTCAAACTATCGCCTA ACAAACAACACGACGCCGCAGCAATTAGTCCCATCTCCCTATTTGTTCTC AATTCGGGATAACAGGAGCGGTAGACAAGGCAAAGACAAAGGAAGCAGCG CCCAATGTCGAAGGCACCCGACGATCATCAGTGAGGCGCAGCTCCGCAGC GGCATCCGAGGTCGACAGCGCAGCAGCGGCGGGACCAAAAGCCAGGCGCG GCTCTGGAGGAATCGCTGCGTCCGGTGTCAAAGGGGGCACGGCGGGGAGC ACTGCGAGGCGTGGTTCGGCATCCAGACCTCTCTCGCACAACAGTCGGCT CTCTCAGAGTAGTAGCAGTACGCAGGCTTCGCAGCAAAGGTATCGATTTG GTCTTTGCCTCGACTGTTTTGTTCAAAATATTTTGAAATCGTATGAATAC TTGTGACAAACGTATGAATACTTGTGACAAACGGACAGGAGTATTGTAGT GTACGAACTTCAACGAATCAAGACAACGCAGGTGATGTATGTATACCTAC ACACATGAATACGACAGGACGGCACTCGTAAGGCCAGAGGCAGGTGTCCT TGTAGTATTTAGACCACTATGTTTCGGAGCCAAGATTCCGCAACATGGAA GTGCTGCGCGCTGTCGGCCTCTCACATTTCTGTCGTCATAATCTACCGAC TCCGCAGAGAGTATACTTCTAGGGGGCTAGGGGGGCGCGTTTCGTGAAGT AGCAAACCTCACTGCTATGTCGCCCCACAATGAGGGAAGAAAACACGACG GCGACAATCTTTTGTTGGACGATTGACGAAAGAATGCCCCAGAAGAAGCC GTGTTCGAAGCTCCTTGTCATCTCTCCGCGGCGGGAAAAGACGAACGTCT GCAGTTGGCTTTTCCCCTTCCCCCAAAAGACATTTCGAACGTGACGCGTA ATCACAGAGTTTCTTCCTGTTGTCCGCGGCAGGCGTGCTTCAAACGCTCG TCGCTCGAGTGTAGACGGCGACCGACCCCTGTCGGCGCCCCAGACAAAGC CGCCGATCCCTAAGCAGCGGCCTCGTAGCTCGCTCGGGGAGAAGAACGAC GGAAGCGGCAAGCCGACCAAGTCTAGGAGAAGATCATACCTCGGGCAGCC GGTAATGCCATCTTACTACTATCCCATACGTCTATATTTACGCACTTATG GTAGCTGTCTCCTCAAGTCTCCTCGAAACATTCAACATATTGAAGGATAG TACTCTATTTTGGGACCCATGTACAAGTGTTTTACAGGCGGTTTCTCTTC ATGATTATTCTGTTTCTTGCCGATGGGTGGGCATGCCATTCAGACTGCTG GACAGGGTGGGAATGCCGTGGGCGCCGCTGCGGCGGTTGCAGTCGATGCG GCGGCTGCTGTTGACGGTACTGCGCCAGCTCAGGACGAGCCAGTAAAGGA CGAGCCAGCTCAAGACGTCGAGGATATGAAGATAGACAGCTGGGAATCGG TCTCGCAACAGCCTTCGTGGTGAGTCCCACATCCCAACCACAGAGGACAT CGAATATAGAGTGAGTGTATTATGAGGGAGTGGATGTTGGCAAATGATCA AAGTGTCGCTGGGTTTGGCCACTGTTGTTGTACCACTAAGTACAAATGTT CATGTCTTCTTTTTTAGAAGGTGGCGGTGTGACTGTATCTAGACTCGGCT GAATAACGAGCGTGTGTATTCTGTCACTCCCGGCCTTTAAATAGTTGCTC TCCCCTTGGAAAATTATCGGCAGTAACTTTGTCGATGCTCCGTTGCGTGT CCGCGTCGCGCGCACAGCCCACTCTGCCACATGGTTTTCTCGACGGAAGG AAAGAGGGACCAGCATATTAAGTACTCCCCGGCGCACGCTCCCCCCGCAG AGGGTTCAAATCCCCCGCCCGAGCCCACCATGGACAGCATAACCATCTAT TCCGGCTCGAAGCTATTCTGGCGCACTGGGCTGAACGTGGAGATGTTCAT GCAGCAGCACAAAACGGCCAACAACGTTGTTCAAGCAAGTGGATAATAGT TTTTGGGAGGGTACGAATGCAATAGTCGGTAGACAATAATAGCATCCTTA CAATGCCGGGACGGAGCGATATGCCGGGTTTTCGCCGGGGGGGGGGGGGT ACACGTGAAGGAGCCACTGCTGGATAGCGTGACGGGGGGGGGGGGGCAAC ATAAAGCCTCCGTTTCAGAGCGTCTCTTGATGCAAATGTATGTACGTTCC TATATGATAGTTGGGTATTGTGGAGAAAGAACTCCCAACGTGATGAACGG CGCTAACTCCAACTCCACCCGCCAGGTCCTGATTCACGTTCAATTTTTCG CTATTTATTTTGCACTTTTCCTGCCACGGCAGATAGTGATATTTGACGCC AGCACTTACCAAGAGCTAGCACAGGTGTGGGTGTGCTGGAGTGCAGTGGT GGCGAATCTTGACGCCAAGGAGATGAAGAAAGAGGTTTGTGTGCAGAGAA ATGCTCCAACACTTGTTTGTTCTTGCGACAAGGAGGTGTTCACAGAGGTA GTCAGGCAGGAGAAACTCATGCTTACATGTTCAAGAAACAGGGCCTAGCG TACGCTCCCCCACGTATTCCCTTCTCACTTTTGGAACAACACCGTAAGAC GAGGCGGAAAGAAAGATCCACGCGTGGAAAACACCCGCATGACAATCTCG TGTTCGTTCATACCGTGCGAATCTATCCCGTCCCGCTGTACACAAAATCA AATATTCAGCGCTGCTTTGTTATAGCGTGAATTCACTCGAAAAGCGGTGT ACATGTGCTGACGCGCGGCAGATGGACGCGGCGGAGAGGGCGTTCCACAA CCTTGGAATGAAACCGACGCCCGAGAACGTGCTGGCGGAGGCCACGCGGA AGGCCGCAGTGTCTTTCATCATCAAGAGAATACAGGTGGATCGGGATGAG AGTCGCGAGGAGGCCGGGGGGCCCGCGGTGTCTCACAAGGTGTCCATGCT GCAGATGGCCGCGGACGAGGACGGGATGCAGCTGCTCGTGGAAAAGCCGG AGGGAGTCAACGACACGTTCAGCCGAGCGATGACGAAGCGGGCTTCAATG TGAGGGAGCACACTCGATAGCGAGAGAACACGGAATGGACGGGTAGGGGG GGGCGTGCTAACGGGGGTGTCAGAACGGCGGGAAACGCTCCCCAGCTTCT TAATTTATTGTGATGACATATCGCTAGATTATACCAAAACACATTGGTTC ATGTACAACCAAGATTTCAGATGGGGCCTTTCGAGTAGGTACATTGGAGA CACAGATAAATATGTTCCGTCTAGCGACTCGTCGGGGTGCATAAAAAACT GCATTGCATAGCACACATGTACGGAACCTCGGCTACATATCTCAATGCAA AGCTGGCACGAGCCGGTGCTGCTAATTAATGTACCTGCAGATGCAAGCTT TGACACATAAATACACGTCTCGGGTGTTCGGCGGAGCACTCCCCTGCCAA TCGCATACGTCCATCACAGACAAACACAGCGTCCCGTTGAAACAATGAAA CGACCACGAGCCTTTTGTTACCTCTGCTCGCGCCCCATTTGAGGAGCGAA TTCTGCTCGTCCAACGCCCTTTCGTCCAAGAGAAACGTTATGTGTCCATA AGGAAGGTGCATTGAAACAACATTTTCGGCACTAGTAATCGGTCAATGAG AATCCATCCTTCTTTCCGGTTGTTGCAGGCTGTGATGTCTTGCTCTTGTA TTTTACCCCACGACCCGTTGTACTTTTGGCAGCCATGAAACTATCGAGTT CCAAGCACACCGCATCACGCTCGGGTTGACACATGGGTCTTTGTTTACGA TGCGGTGCGCCTTTCTTTCGCGTTTCGTTTGTTCTTCGGTGGTGGTGGTG CTCTCTTTGATGCAGCCAAGAGGTCGCCGAGGTGATGACGAGCTTGAGGA AGAGCCTGGGAGATGTTAACACGGCCGCCCAGGCGGCTGCAGCCAGTCTC GTCGGGGCAACGGGTACTGTGGAGCAGGTAACACGCTGCTACCTACCTTT CATGGATGCGCCCAAAGCACCCCCAAGACTTACAAATGATTCGTGATTGG ATAGCTGATACAAGTTGGATTGGATGAAGCAGCAGCACTATCATGTACAA CCGGGGTCTACCACACCTGTGTTTTGTTTATTTCTTCATTTGTCACGGAA GACGTTGTCGGTACCCGAGAGCGGGGGGACGAAGGCATTCACACAGGCCG TCATCATGATCCAAGAGAACGACATCCTGCAACGAAGGGTGTGTTGACGT CGATGCCTCACGCTCATACTTCTGGCCACAGAGCGACGCGCAAAATTCTC CACCGATCAGAAGAGCTTTACATCGCATGATAACCATCGCCGCCGTGGAT ATGTTCGAAACTTGCTTACTCGGGCGTACTCTCACCGGACCTAAAGAATA ACACACCAATGCAGTGCGAGCAAGCTGTGCTTTTCTGCTGCTTTAGACTA ATACATGACACGACGGTAAAACCACGGCTTCTGTGTTCAGCATGAGCAAA CCACCTTCCTTCTTCAGAAATTCACCATGATTCTCTCCCTGTCTGCCACT ACGATGTTGCTCCCCACCTTAGGGCCGGCGTGGGTCGGTGGAGGTCGCGC GACGAGCGTCGATTCAAGGGTCCTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9726:1856..7081+

>mRNA_Ecto-sp8_S_contig9726.31459.1 ID=mRNA_Ecto-sp8_S_contig9726.31459.1|Name=mRNA_Ecto-sp8_S_contig9726.31459.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1518bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9726:1856..7081+ (Ectocarpus species8 EcLAC_412)
ATGGGAGCCGCGGGGTCTGTCGGTGTCGTCGACCCCGCAGCCCTGCGAAA
AGAGTATGAAGCTATGGCGGCTAAGGACGTCGGGGACGAGGAACTCCTTA
ACCACATGAAGAAGCTCATTATATCTCCGCAAACAGGAGCGGTAGACAAG
GCAAAGACAAAGGAAGCAGCGCCCAATGTCGAAGGCACCCGACGATCATC
AGTGAGGCGCAGCTCCGCAGCGGCATCCGAGGTCGACAGCGCAGCAGCGG
CGGGACCAAAAGCCAGGCGCGGCTCTGGAGGAATCGCTGCGTCCGGTGTC
AAAGGGGGCACGGCGGGGAGCACTGCGAGGCGTGGTTCGGCATCCAGACC
TCTCTCGCACAACAGTCGGCTCTCTCAGAGTAGTAGCAGTACGCAGGCTT
CGCAGCAAAGGCGTGCTTCAAACGCTCGTCGCTCGAGTGTAGACGGCGAC
CGACCCCTGTCGGCGCCCCAGACAAAGCCGCCGATCCCTAAGCAGCGGCC
TCGTAGCTCGCTCGGGGAGAAGAACGACGGAAGCGGCAAGCCGACCAAGT
CTAGGAGAAGATCATACCTCGGGCAGCCGACTGCTGGACAGGGTGGGAAT
GCCGTGGGCGCCGCTGCGGCGGTTGCAGTCGATGCGGCGGCTGCTGTTGA
CGGTACTGCGCCAGCTCAGGACGAGCCAGTAAAGGACGAGCCAGCTCAAG
ACGTCGAGGATATGAAGATAGACAGCTGGGAATCGGTCTCGCAACAGCCT
TCGTGCCCACTCTGCCACATGGTTTTCTCGACGGAAGGAAAGAGGGACCA
GCATATTAAGTACTCCCCGGCGCACGCTCCCCCCGCAGAGGGTTCAAATC
CCCCGCCCGAGCCCACCATGGACAGCATAACCATCTATTCCGGCTCGAAG
CTATTCTGGCGCACTGGGCTGAACGTGGAGATGTTCATGCAGCAGCACAA
AACGGCCAACAACGTTGTTCAAGCAATGATATTTGACGCCAGCACTTACC
AAGAGCTAGCACAGGTGTGGGTGTGCTGGAGTGCAGTGGTGGCGAATCTT
GACGCCAAGGAGATGAAGAAAGAGATGGACGCGGCGGAGAGGGCGTTCCA
CAACCTTGGAATGAAACCGACGCCCGAGAACGTGCTGGCGGAGGCCACGC
GGAAGGCCGCAGTGTCTTTCATCATCAAGAGAATACAGGTGGATCGGGAT
GAGAGTCGCGAGGAGGCCGGGGGGCCCGCGGTGTCTCACAAGGTGTCCAT
GCTGCAGATGGCCGCGGACGAGGACGGGATGCAGCTGCTCGTGGAAAAGC
CGGAGGGAGTCAACGACACGTTCAGCCGAGCGATGACGAAGCGGGCTTCA
ATCCAAGAGGTCGCCGAGGTGATGACGAGCTTGAGGAAGAGCCTGGGAGA
TGTTAACACGGCCGCCCAGGCGGCTGCAGCCAGTCTCGTCGGGGCAACGG
GTACTGTGGAGCAGGGCCGGCGTGGGTCGGTGGAGGTCGCGCGACGAGCG
TCGATTCAAGGGTCCTGA
back to top