mRNA_Ecto-sp8_S_contig97248.31457.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97248.31457.1
Unique NamemRNA_Ecto-sp8_S_contig97248.31457.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig97248.31457.1 vs. uniprot
Match: D7FV94_ECTSI (ANAPC4_WD40 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV94_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.040e-23
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 NFRMIRDFSSVVLMDFLGPNELLVLENPWEAVKESLPEVLDRKQYGV 141
            NFRMIRDFSSVVLMDFLGPNELLVLENPWEAVKESLPEVLDRKQYGV
Sbjct:  777 NFRMIRDFSSVVLMDFLGPNELLVLENPWEAVKESLPEVLDRKQYGV 823
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BLAST of mRNA_Ecto-sp8_S_contig97248.31457.1 vs. uniprot
Match: A0A7S3D3N1_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D3N1_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 3.570e-7
Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    4 FRMIRDFSSVVLMDFLGPNELLVLENPWEAVKESLPEVLDRKQYGV 141
            F+++  +  ++ MD++GP+E++VLE PW  V  SLPE   RK+YG 
Sbjct:  140 FKVVEKYKPLIFMDYVGPDEMMVLERPWLDVISSLPEPFFRKKYGT 185
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BLAST of mRNA_Ecto-sp8_S_contig97248.31457.1 vs. uniprot
Match: W7T5Z3_9STRA (Cirhin n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T5Z3_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.010e-6
Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    1 NFRMIRDFSSVVLMDFLGPNELLVLENPWEAVKESLPEVLDRKQYGV 141
            NF+M   +  VV ++ LGP+ELL++E PW  +   LP+VL R +YG 
Sbjct:  838 NFKMHLGYQGVVAVEALGPDELLLVEEPWIKIVSKLPDVLHRHRYGT 884
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BLAST of mRNA_Ecto-sp8_S_contig97248.31457.1 vs. uniprot
Match: A0A2H9TP44_9FUNG (GYF domain-containing protein n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TP44_9FUNG)

HSP 1 Score: 49.7 bits (117), Expect = 1.280e-5
Identity = 17/46 (36.96%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 NFRMIRDFSSVVLMDFLGPNELLVLENPWEAVKESLPEVLDRKQYG 138
            NF     + +++++D+L  NE +++E PWEA+ + LPE  D K++G
Sbjct: 1331 NFERFSGYKNIMMVDYLTANEAIIVERPWEAIADHLPEAQDCKKFG 1376
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97248.31457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FV94_ECTSI3.040e-23100.00ANAPC4_WD40 domain-containing protein n=2 Tax=Ecto... [more]
A0A7S3D3N1_9EUKA3.570e-743.48Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
W7T5Z3_9STRA5.010e-644.68Cirhin n=3 Tax=Monodopsidaceae TaxID=425072 RepID=... [more]
A0A2H9TP44_9FUNG1.280e-536.96GYF domain-containing protein n=1 Tax=Paramicrospo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97248contigEcto-sp8_S_contig97248:183..326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score93.6
Seed ortholog evalue2.5e-17
Seed eggNOG ortholog2880.D7FV94
Preferred nameCIRH1A
Model size144
KEGG koko:K06171,ko:K14548
KEGG Pathwayko03008,ko04330,ko05010,map03008,map04330,map05010
KEGG ModuleM00682
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000462,GO:0001650,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010015,GO:0010051,GO:0010073,GO:0010101,GO:0010102,GO:0010154,GO:0010305,GO:0010311,GO:0010449,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010817,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022414,GO:0022613,GO:0022622,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0035266,GO:0040007,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048316,GO:0048364,GO:0048366,GO:0048367,GO:0048507,GO:0048518,GO:0048522,GO:0048527,GO:0048528,GO:0048589,GO:0048608,GO:0048646,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0051049,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090696,GO:0090697,GO:0090698,GO:0097159,GO:0099402,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1905392,GO:1905393,GO:1990904,GO:2000012,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.maturation of SSU-rRNA
EggNOG OGsKOG2048@1,KOG2048@2759
Cds size135
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145337.9147162-CDS-Ecto-sp8_S_contig97248:182..3171681145337.9147162-CDS-Ecto-sp8_S_contig97248:182..317Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97248 183..317 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145337.9356854-UTR-Ecto-sp8_S_contig97248:317..3261681145337.9356854-UTR-Ecto-sp8_S_contig97248:317..326Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig97248 318..326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97248.31457.1prot_Ecto-sp8_S_contig97248.31457.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97248 183..317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97248.31457.1

>prot_Ecto-sp8_S_contig97248.31457.1 ID=prot_Ecto-sp8_S_contig97248.31457.1|Name=mRNA_Ecto-sp8_S_contig97248.31457.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=45bp
MIRDFSSVVLMDFLGPNELLVLENPWEAVKESLPEVLDRKQYGV*
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mRNA from alignment at Ecto-sp8_S_contig97248:183..326-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97248.31457.1 ID=mRNA_Ecto-sp8_S_contig97248.31457.1|Name=mRNA_Ecto-sp8_S_contig97248.31457.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97248:183..326- (Ectocarpus species8 EcLAC_412)
AACTTCCGCATGATCCGGGACTTCTCGTCTGTGGTGCTCATGGACTTCTT
GGGTCCGAATGAGCTTCTCGTCCTGGAGAATCCGTGGGAAGCAGTCAAGG
AATCTTTGCCTGAAGTGTTGGACCGCAAGCAGTACGGTGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97248:183..326-

>mRNA_Ecto-sp8_S_contig97248.31457.1 ID=mRNA_Ecto-sp8_S_contig97248.31457.1|Name=mRNA_Ecto-sp8_S_contig97248.31457.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97248:183..326- (Ectocarpus species8 EcLAC_412)
ATGATCCGGGACTTCTCGTCTGTGGTGCTCATGGACTTCTTGGGTCCGAA
TGAGCTTCTCGTCCTGGAGAATCCGTGGGAAGCAGTCAAGGAATCTTTGC
CTGAAGTGTTGGACCGCAAGCAGTACGGTGTTTGA
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