mRNA_Ecto-sp8_S_contig97232.31453.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig97232.31453.1
Unique NamemRNA_Ecto-sp8_S_contig97232.31453.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig97232.31453.1 vs. uniprot
Match: A0A6H5KD94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD94_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 2.440e-38
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:    1 MRTVSWLSESVESSLSAPEDESKRSDTGEEVPRSTTGSPEGASASSATANNDERLRKKAKWKGVTFPILGSDANNLGV 234
            MRTVSWLSESVESSLSAPEDESKRSDT EEVPRSTTGSPEGASASSATA+NDERLRKKAKWKGVTFPILGSDANNLGV
Sbjct: 4471 MRTVSWLSESVESSLSAPEDESKRSDTREEVPRSTTGSPEGASASSATADNDERLRKKAKWKGVTFPILGSDANNLGV 4548
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BLAST of mRNA_Ecto-sp8_S_contig97232.31453.1 vs. uniprot
Match: D7FVC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC4_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 3.910e-27
Identity = 62/78 (79.49%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:   10 VSWLSESVESSLSAPE---DESKRSDTGEEVPRSTTGSPEGASASSATANNDERLRKKAKWKGVTFPILGSDANNLGV 234
            V W    +  SL A +   DESKRSDTGEEVPRSTTGSPEGASASSATA+NDERLRKKAKWKGVTFPILGSDA+NLGV
Sbjct: 4660 VGWAHVDLPVSLRAGDVWKDESKRSDTGEEVPRSTTGSPEGASASSATADNDERLRKKAKWKGVTFPILGSDASNLGV 4737
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig97232.31453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KD94_9PHAE2.440e-3897.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVC4_ECTSI3.910e-2779.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig97232contigEcto-sp8_S_contig97232:299..532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score112.5
Seed ortholog evalue9.2e-23
Seed eggNOG ortholog2880.D7FVC4
Preferred nameHERC1
Model size236
KEGG koko:K10594,ko:K12864
KEGG Pathwayko03040,ko04120,map03040,map04120
KEGG ModuleM00353
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0006808,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0012505,GO:0016020,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051020,GO:0051603,GO:0062012,GO:0062014,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1901565,GO:1901575
Exons1
EggNOG free text desc.protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
EggNOG OGsCOG5184@1,KOG1426@2759,KOG1477@1,KOG1477@2759
EC2.3.2.26
Cds size234
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145337.7313418-CDS-Ecto-sp8_S_contig97232:298..5321681145337.7313418-CDS-Ecto-sp8_S_contig97232:298..532Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig97232 299..532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig97232.31453.1prot_Ecto-sp8_S_contig97232.31453.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig97232 299..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig97232.31453.1

>prot_Ecto-sp8_S_contig97232.31453.1 ID=prot_Ecto-sp8_S_contig97232.31453.1|Name=mRNA_Ecto-sp8_S_contig97232.31453.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=78bp
MRTVSWLSESVESSLSAPEDESKRSDTGEEVPRSTTGSPEGASASSATAN
NDERLRKKAKWKGVTFPILGSDANNLGV
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mRNA from alignment at Ecto-sp8_S_contig97232:299..532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig97232.31453.1 ID=mRNA_Ecto-sp8_S_contig97232.31453.1|Name=mRNA_Ecto-sp8_S_contig97232.31453.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97232:299..532+ (Ectocarpus species8 EcLAC_412)
ATGCGCACGGTTTCGTGGCTGAGTGAATCAGTGGAAAGCTCACTTTCGGC
ACCGGAGGACGAATCCAAGCGCTCAGACACGGGCGAGGAAGTGCCACGGT
CGACCACCGGTAGCCCAGAGGGAGCCTCCGCGTCGTCAGCCACAGCCAAC
AACGACGAGCGCTTGAGGAAGAAGGCAAAGTGGAAGGGCGTGACGTTCCC
GATTCTTGGTTCGGACGCGAACAACCTTGGGGTA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig97232:299..532+

>mRNA_Ecto-sp8_S_contig97232.31453.1 ID=mRNA_Ecto-sp8_S_contig97232.31453.1|Name=mRNA_Ecto-sp8_S_contig97232.31453.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp8_S_contig97232:299..532+ (Ectocarpus species8 EcLAC_412)
ATGCGCACGGTTTCGTGGCTGAGTGAATCAGTGGAAAGCTCACTTTCGGC
ACCGGAGGACGAATCCAAGCGCTCAGACACGGGCGAGGAAGTGCCACGGT
CGACCACCGGTAGCCCAGAGGGAGCCTCCGCGTCGTCAGCCACAGCCAAC
AACGACGAGCGCTTGAGGAAGAAGGCAAAGTGGAAGGGCGTGACGTTCCC
GATTCTTGGTTCGGACGCGAACAACCTTGGGGTA
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