mRNA_Ecto-sp8_S_contig9696.31408.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig9696.31408.1 vs. uniprot
Match: A0A6H5KJV3_9PHAE (PsbP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV3_9PHAE) HSP 1 Score: 711 bits (1835), Expect = 4.450e-252 Identity = 405/476 (85.08%), Postives = 422/476 (88.66%), Query Frame = 3
Query: 171 MVLTKAHVTALAATCSLCSFSQAGAFVQHSHAGAFRAHPSPSAGGFSSLGARARAGQGMISSTVEA-SCSSRSRWFPRTTLGQQQXXXXXXXXXSRSSHVRLGALPEGPGGESTTADEAVESGRTDTERSADDAGSGRTRRAAG--------SVAGGXXXXXXXXAGALDGQFISKLAKRLADSFPLLTTEEIKKEVRALLNPETKGDTPAKQAPGAREDTLAVLAKDVRELVEDLMDQVGVGSGADDKAGLVELKDVAQKFKGVLRGDPAVVQELRRQVLDDLEEVREEIEELLEVKELSKARAKLEKATAESTEMVLDSAAAALAKGIDKVVNEGKDAIPEGEETEKFQVSTYFFGKENELWDDMRANGVTRERFALYSLLGGAVALGGNLFGVTSALLGSVAPEASRDLRVDLLFPIGGFKRFYSPEDGYEFMYPDTWVGDSGLALRRQRDLEDLRASPAAVARARQRRSSSA 1571
MVLTKA +TALAATCSL SFSQAGAFVQHSH G+FRA+PSPSAGGFS LGARARA QG+ISSTV A SC S SRWFPRTT+ QQQ SR+SHVRLGALPEG GE TTA++ +ESGRT+ ERSADDAGSGR VAG AG LDGQFISKLAKRL DSFPLLTTEEIKKEVRALLNPETKGDTP+K A GAR+DTLAVLAK+VRELVEDLMDQVGVGSGAD+KAGLVELKDVAQKFKGVLRGDPA VQELRRQVLDDLEEVREEIEELLEVKELSKARAKLEKATAESTEMVLDSAAAALAKGIDKVVNEG+DAIPEGEETEKFQVSTYFFGKENELW+DMRANGVTRERF LYSLLGGAVALGGNLFGVTSALLGSVAPEASRDLRVDLLFPIGGFKRFYSPEDGYEF+YPDTWVGDSGLALRRQRDLEDLRASPAAVARARQRRSSSA
Sbjct: 1 MVLTKAQITALAATCSLYSFSQAGAFVQHSHTGSFRANPSPSAGGFSPLGARARARQGVISSTVVATSCFSPSRWFPRTTMRQQQQHPRHQRRRSRTSHVRLGALPEGSDGEITTANKGIESGRTEAERSADDAGSGRRXXXXXXXXXXXXXGVAG-------KGAGGLDGQFISKLAKRLTDSFPLLTTEEIKKEVRALLNPETKGDTPSK-ATGARDDTLAVLAKEVRELVEDLMDQVGVGSGADEKAGLVELKDVAQKFKGVLRGDPAAVQELRRQVLDDLEEVREEIEELLEVKELSKARAKLEKATAESTEMVLDSAAAALAKGIDKVVNEGRDAIPEGEETEKFQVSTYFFGKENELWNDMRANGVTRERFVLYSLLGGAVALGGNLFGVTSALLGSVAPEASRDLRVDLLFPIGGFKRFYSPEDGYEFIYPDTWVGDSGLALRRQRDLEDLRASPAAVARARQRRSSSA 468
BLAST of mRNA_Ecto-sp8_S_contig9696.31408.1 vs. uniprot
Match: D8LPY6_ECTSI (PsbP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY6_ECTSI) HSP 1 Score: 578 bits (1490), Expect = 4.650e-201 Identity = 321/332 (96.69%), Postives = 321/332 (96.69%), Query Frame = 3
Query: 576 GRTRRAAGSVAGGXXXXXXXXAGALDGQFISKLAKRLADSFPLLTTEEIKKEVRALLNPETKGDTPAKQAPGAREDTLAVLAKDVRELVEDLMDQVGVGSGADDKAGLVELKDVAQKFKGVLRGDPAVVQELRRQVLDDLEEVREEIEELLEVKELSKARAKLEKATAESTEMVLDSAAAALAKGIDKVVNEGKDAIPEGEETEKFQVSTYFFGKENELWDDMRANGVTRERFALYSLLGGAVALGGNLFGVTSALLGSVAPEASRDLRVDLLFPIGGFKRFYSPEDGYEFMYPDTWVGDSGLALRRQRDLEDLRASPAAVARARQRRSSSA 1571
GRTRRAAGSVAGG AGALDGQFISKLAKRLADSFPLLTTEEIKKEVRALLNPETKGDTPAK APGAREDTLAVLAKDVRELVEDLMDQVGVGSGADDKAGLVELKDVAQKFKGVLRGDPAVVQELRRQVLDDLEEVREEIEELLEVKELSKARAKLEKATAESTEMVLDSAAAALAKGIDKVVNEGKDAIPEGEETEKFQVSTYFFGKENELWDDMRANGVTRERF YSLLGGAVALGGNLFGVTSALLGSVAPEASRDLRVDLLFPIGGFKRFYSPEDGYEFMYPDTWVGDSGLALRRQRDLEDLRASPAAVARARQRRSSSA
Sbjct: 44 GRTRRAAGSVAGGGGAGKG--AGALDGQFISKLAKRLADSFPLLTTEEIKKEVRALLNPETKGDTPAK-APGAREDTLAVLAKDVRELVEDLMDQVGVGSGADDKAGLVELKDVAQKFKGVLRGDPAVVQELRRQVLDDLEEVREEIEELLEVKELSKARAKLEKATAESTEMVLDSAAAALAKGIDKVVNEGKDAIPEGEETEKFQVSTYFFGKENELWDDMRANGVTRERFVRYSLLGGAVALGGNLFGVTSALLGSVAPEASRDLRVDLLFPIGGFKRFYSPEDGYEFMYPDTWVGDSGLALRRQRDLEDLRASPAAVARARQRRSSSA 372
BLAST of mRNA_Ecto-sp8_S_contig9696.31408.1 vs. uniprot
Match: A0A835YU89_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU89_9STRA) HSP 1 Score: 108 bits (269), Expect = 1.390e-21 Identity = 55/103 (53.40%), Postives = 72/103 (69.90%), Query Frame = 3
Query: 1185 EKFQVSTYFFGKENELWDDMRANGVTRERFALYSLLGGAVALGGNLFGVTSALLGSVAPEASRDLRVDLLFPIGGFKRFY------SPEDGYEFMYPDTWVGD 1475
E F V+TYFFGK+NE W+DM+ NGV RF LY+ L AVA+GGNLFGVTSALLG+ AP+ + ++D+L+P+ GFKR S G+EF+YP W+ D
Sbjct: 76 ESFSVTTYFFGKDNEFWEDMQRNGVQPRRFFLYTGLSAAVAVGGNLFGVTSALLGA-APKLAERSQLDVLYPVKGFKRCVNKGESESESHGFEFVYPHEWLAD 177
BLAST of mRNA_Ecto-sp8_S_contig9696.31408.1 vs. uniprot
Match: A0A4D9CU31_9STRA (PsbP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU31_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 2.330e-16 Identity = 43/96 (44.79%), Postives = 62/96 (64.58%), Query Frame = 3
Query: 1206 YFFGKENELWDDMRANGVTRERFALYSLLGGAVALGGNLFGVTSALLGSVA-PEASRDLRVDLLFPIGGFKRFYSPEDGYEFMYPDTWVGDSGLAL 1490
YFFG E +D+ G++R+R L + + +ALG N GVTSALL + + PE DL++D+L+P+ GFKRF +DGYEF YP +W+ D + L
Sbjct: 3 YFFGTAGEFDEDLAYLGISRQRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDLKLDVLYPVRGFKRFVDTDDGYEFRYPQSWLSDQAVLL 98
BLAST of mRNA_Ecto-sp8_S_contig9696.31408.1 vs. uniprot
Match: K8YRA7_NANGC (PsbP domain-containing protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YRA7_NANGC) HSP 1 Score: 89.0 bits (219), Expect = 1.660e-15 Identity = 43/96 (44.79%), Postives = 61/96 (63.54%), Query Frame = 3
Query: 1206 YFFGKENELWDDMRANGVTRERFALYSLLGGAVALGGNLFGVTSALLGSVA-PEASRDLRVDLLFPIGGFKRFYSPEDGYEFMYPDTWVGDSGLAL 1490
YFFG E +D+ G++R+R L + + +ALG N GVTSALL + + PE D ++D+L+P+ GFKRF EDGYEF YP +W+ D + L
Sbjct: 104 YFFGTAGEFDEDLAYLGISRQRLLLNAGVATTLALGANFVGVTSALLNTFSTPETMSDWKLDVLYPVRGFKRFVDTEDGYEFRYPQSWLSDQAILL 199
BLAST of mRNA_Ecto-sp8_S_contig9696.31408.1 vs. uniprot
Match: A0A8J5XA94_DIALT (PsbP domain-containing protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XA94_DIALT) HSP 1 Score: 83.6 bits (205), Expect = 3.320e-14 Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 3
Query: 1260 TRERFALYSL--LGGAVALGGNLFGVTSALLGSVAPEASRDLRVDLLFPIGGFKRFYSPEDGYEFMYPDTWVGDSGLALRRQRDLED 1514
T R AL S LG AVALGG+LFGVT A+L S+AP+ASR R+D+L+P+GGF+R+ + + +EF+YP W+ D L+L + + D
Sbjct: 32 TASRRALVSTVPLGLAVALGGDLFGVTQAVL-SIAPDASRTYRLDVLYPVGGFRRYLASDGAFEFVYPKAWLADQALSLPKAGQVRD 117
BLAST of mRNA_Ecto-sp8_S_contig9696.31408.1 vs. uniprot
Match: UPI000D15265E (psbP domain-containing protein 7, chloroplastic-like isoform X2 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=UPI000D15265E) HSP 1 Score: 80.5 bits (197), Expect = 7.180e-14 Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 3
Query: 1248 ANGVTRERFALYSLLGGAVALGGNLFGVTSALLGSVAPEASRDLRVDLLFPIGGFKRFYSPEDGYEFMYPDTWVGDSGLALR 1493
A V R RF L ++ G A+ALG + G TSA+L S+ PE R LRVD+L+PIGG+KR G+EF++P TWVGD L R
Sbjct: 63 APSVFRRRFILGTITGTALALGADFLGSTSAIL-SLNPELFRGLRVDVLYPIGGYKRCLETSQGFEFIFPKTWVGDQTLLYR 143
BLAST of mRNA_Ecto-sp8_S_contig9696.31408.1 vs. uniprot
Match: A0A7I4D1L6_PHYPA (PsbP domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4D1L6_PHYPA) HSP 1 Score: 81.6 bits (200), Expect = 9.200e-14 Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 3
Query: 1242 MRANGVTRERFALYSLLGGAVALGGNLFGVTSALLGSVAPEASRDLRVDLLFPIGGFKRFYSPEDGYEFMYPDTWVGDSGLALR 1493
M A V R RF L ++ G A+ALG + G TSA+L S+ PE R LRVD+L+PIGG+KR G+EF++P TWVGD L R
Sbjct: 8 MLAPSVFRRRFILGTITGTALALGADFLGSTSAIL-SLNPELFRGLRVDVLYPIGGYKRCLETSQGFEFIFPKTWVGDQTLLYR 90
BLAST of mRNA_Ecto-sp8_S_contig9696.31408.1 vs. uniprot
Match: A0A7S3ENR3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ENR3_9RHOD) HSP 1 Score: 83.6 bits (205), Expect = 1.120e-13 Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 3
Query: 1185 EKFQVSTYFFGKENELWDDMRANGVTRERFALYSLLGGAVALGGNLFGVTSALLGSVAPEASRDLRVDLLFPIGGFKRFYSPEDGYEFMYPDTWVGDSGLAL 1490
EK + T+ FGKE E D+ G R RF L A+ LGGNL G TSA+L S+ SR L++D+++P+GGFKR+ S D YEF+YP WV D +AL
Sbjct: 123 EKTDLRTFLFGKEGEFDRDLGVLGSDRRRFFTGLGLSTALVLGGNLLGSTSAVL-SMNANTSRALKLDVVYPVGGFKRYISKGD-YEFIYPGDWVEDYAVAL 222
BLAST of mRNA_Ecto-sp8_S_contig9696.31408.1 vs. uniprot
Match: A0A1Y1I0H8_KLENI (PsbP family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I0H8_KLENI) HSP 1 Score: 77.4 bits (189), Expect = 2.530e-12 Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 3
Query: 1260 TRERFALYSLLGGAVALGGNLFGVTSALLGSVAPEASRDLRVDLLFPIGGFKRFYSPEDGYEFMYPDTWVGDSGLALR 1493
+R R + G AV LGGNL GVTS LLG + PEASR L++D LFP+ GFKR G+EF+YP W+GD L R
Sbjct: 8 SRRRLFYSGVTGLAVTLGGNLGGVTSGLLG-LNPEASRQLKLDTLFPVKGFKRCIESGQGFEFIYPAEWLGDQRLLYR 84 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9696.31408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig9696.31408.1 >prot_Ecto-sp8_S_contig9696.31408.1 ID=prot_Ecto-sp8_S_contig9696.31408.1|Name=mRNA_Ecto-sp8_S_contig9696.31408.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=467bp MVLTKAHVTALAATCSLCSFSQAGAFVQHSHAGAFRAHPSPSAGGFSSLGback to top mRNA from alignment at Ecto-sp8_S_contig9696:1688..7134+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig9696.31408.1 ID=mRNA_Ecto-sp8_S_contig9696.31408.1|Name=mRNA_Ecto-sp8_S_contig9696.31408.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5447bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9696:1688..7134+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9696:1688..7134+ >mRNA_Ecto-sp8_S_contig9696.31408.1 ID=mRNA_Ecto-sp8_S_contig9696.31408.1|Name=mRNA_Ecto-sp8_S_contig9696.31408.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1401bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9696:1688..7134+ (Ectocarpus species8 EcLAC_412)back to top |