mRNA_Ecto-sp8_S_contig9681.31387.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9681.31387.1
Unique NamemRNA_Ecto-sp8_S_contig9681.31387.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9681.31387.1 vs. uniprot
Match: A0A6H5L8S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8S1_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 3.050e-53
Identity = 113/183 (61.75%), Postives = 115/183 (62.84%), Query Frame = 1 
Query:   19 GVKVKVKTEPAFMGAGGGALAVPIGTQEVSGEDLSKVVDAKIKLEGNDGRDGSGANRKRSRPQGSVSPSPNEPGFRDSDAAGGDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPADSRPTQTTFAWTDMLVDDDNSDDLDGMR 567
            G+ VKVKTEP FMGAGGGALAVP+GTQEVSGEDLSKVVDAKIKLEGNDGRDGSGANRKRSRPQGSVSPSPNEPGFRD DAAGGDSG                                                                 AVPADSRPTQTTFAWTDMLVDDDNSDDLDGMR
Sbjct:  216 GINVKVKTEPGFMGAGGGALAVPLGTQEVSGEDLSKVVDAKIKLEGNDGRDGSGANRKRSRPQGSVSPSPNEPGFRDPDAAGGDSGSGGRSGGAREAAMYLGSDDDEGIDEHRTLAKSRRRRVRKKPAASTAIAEGGRGGDGNHGSREAAAAVPADSRPTQTTFAWTDMLVDDDNSDDLDGMR 398
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BLAST of mRNA_Ecto-sp8_S_contig9681.31387.1 vs. uniprot
Match: D7FIW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW2_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 7.450e-48
Identity = 174/182 (95.60%), Postives = 175/182 (96.15%), Query Frame = 1 
Query:   22 VKVKVKTEPAFMGAGGGALAVPIGTQEVSGEDLSKVVDAKIKLEGNDGRDGSGANRKRSRPQGSVSPSPNEPGFRDSDAAGGDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPADSRPTQTTFAWTDMLVDDDNSDDLDGMR 567
            VKVKVKTEP FMGAGGGALAVPIGTQEVSGEDLSKVV+A IKLEGNDGRDGSGANRKRSRPQGSV PSPNE GFRDSDAAGGDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AVP DSRPTQTTFAWTDML DDDNSDDLDGMR
Sbjct:  234 VKVKVKTEPGFMGAGGGALAVPIGTQEVSGEDLSKVVEATIKLEGNDGRDGSGANRKRSRPQGSVPPSPNEQGFRDSDAAGGDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AVPVDSRPTQTTFAWTDMLGDDDNSDDLDGMR 414
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9681.31387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8S1_9PHAE3.050e-5361.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIW2_ECTSI7.450e-4895.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9681contigEcto-sp8_S_contig9681:2569..4767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1449
Hectar predicted targeting categoryother localisation
Exons3
Cds size516
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145332.9148216-UTR-Ecto-sp8_S_contig9681:2568..26221681145332.9148216-UTR-Ecto-sp8_S_contig9681:2568..2622Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9681 2569..2622 +
1681145332.9610875-UTR-Ecto-sp8_S_contig9681:3888..47671681145332.9610875-UTR-Ecto-sp8_S_contig9681:3888..4767Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9681 3889..4767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145332.9259787-CDS-Ecto-sp8_S_contig9681:2622..26671681145332.9259787-CDS-Ecto-sp8_S_contig9681:2622..2667Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9681 2623..2667 +
1681145332.9369924-CDS-Ecto-sp8_S_contig9681:3121..35231681145332.9369924-CDS-Ecto-sp8_S_contig9681:3121..3523Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9681 3122..3523 +
1681145332.948999-CDS-Ecto-sp8_S_contig9681:3819..38881681145332.948999-CDS-Ecto-sp8_S_contig9681:3819..3888Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9681 3820..3888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9681.31387.1prot_Ecto-sp8_S_contig9681.31387.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9681 2623..3888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9681.31387.1

>prot_Ecto-sp8_S_contig9681.31387.1 ID=prot_Ecto-sp8_S_contig9681.31387.1|Name=mRNA_Ecto-sp8_S_contig9681.31387.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=172bp
MGAGGGALAVPIGTQEVSGEDLSKVVDAKIKLEGNDGRDGSGANRKRSRP
QGSVSPSPNEPGFRDSDAAGGDSGSGGRRGGAREAAMYLGSDDDEGIDED
RTPAKSRRRRVRKKPAASTAIAEGGGGGDGNHGSGGAAAAVPADSRPTQT
TFAWTDMLVDDDNSDDLDGMR*
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mRNA from alignment at Ecto-sp8_S_contig9681:2569..4767+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9681.31387.1 ID=mRNA_Ecto-sp8_S_contig9681.31387.1|Name=mRNA_Ecto-sp8_S_contig9681.31387.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2199bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9681:2569..4767+ (Ectocarpus species8 EcLAC_412)
GGCGGTGCTGGTCGAGGTGGGGTCAAGGTGAAGGTCAAGACGGAGCCTGC
GTTTATGGGGGCCGGGGGAGGTGCTCTCGCGGTGCCGATTGGAACACAGG
TGCGATGAGGATGTGGGTTCAGTGTTTGTGTAGTTTTGATTTTTGAAGGC
TCGCGATTTTTTTCCTTGTTTTCGTTTGTTCCAAATTTCGTTGTTTTCGG
CGACGTGGCGGCACGTACCATTGGTTTCTTAACCTGAGCGTATGAAAAAT
GTGTTTGGAATTTTCCATGATTTACCGCTGACTCAACCTGTCGGACCCAC
GCTACGACGCAACAATAACACTGGTCTCCCGTAGTTGTCATCACGCTATT
TTCCAACCCTCACAGACGACTGTGTCTCGGACGTGGACACATGTGAGCAC
TGTGTAGAATATATCTTCAACACAAGCAGGAAATCGCTGTTAGGAGCCAA
GTTAGAGCAAATGGAACACGGACCAGGCTTAGCACCCGTTGCGGTCGATT
TAAAGCCCCCCAACCCCCCGCCCCTGCGTGTGCCTGCGTTTGTGGGCGCC
CAGGAAGTATCGGGTGAGGACCTCTCGAAAGTCGTGGACGCCAAAATCAA
GCTAGAGGGAAACGACGGTCGTGACGGCAGCGGGGCCAACCGAAAACGCT
CCCGGCCGCAAGGCTCGGTGTCACCGTCTCCGAACGAGCCGGGATTCCGC
GACTCAGACGCCGCTGGCGGCGACAGCGGCAGCGGTGGTAGACGTGGTGG
TGCCCGTGAAGCGGCCATGTACCTCGGAAGTGATGACGACGAAGGCATAG
ACGAAGACCGGACACCCGCGAAATCTCGGAGGAGAAGGGTTCGGAAGAAA
CCTGCTGCATCGACCGCTATTGCCGAAGGAGGCGGGGGCGGTGATGGCAA
CCATGGCTCAGGAGGAGCGGCGGCGGCGGTGCCAGCGGATAGCCGGCCGA
CACAGGTGAAGGATGGAGGTGCTTTGCGGGCTCTGACTGATGTGATTGCG
TTAGTAATCTCAACGCGGTTGCGCGTTGTCAAACATGAGCTGGTGCCAAG
TTGTGTACTGTGTCCAACTTGCATCTCTATGGCGACAAAGGCGGTGCTGT
CGGTGCTGGCTCATGCTCTGGTTGATGCATCCTACCAACGCATCGAATAG
CATCCTTCGGAGCTCACGATAGACACGACCTGCGCCCGGCGGCTGTTGTG
CGAAACGGTCCCCGCCGCCTTTTGCTATGTCGCTTTTGTCTTGTTGAGCA
GACCACATTTGCATGGACAGATATGCTGGTTGACGACGACAACTCGGACG
ACTTGGACGGCATGCGCTAAGCAAGCCCCATAGGCACGTTCAAGACATAC
GTTCATGCTTGCTACCAGTAGGTGTATTGGCGACGCGAGTTGAATCGAAT
CGTTTATCGTGGAGCAGTCTGAAAAGCCGCCGCCGCTTTACTTGCTGGTG
TATAATGAACATGCTTCGGCGTTGTCCTCGCGTTCATGGTCAATTCAGTG
ACGGCGCATGGATTGTGTTCGTTATGATAGGTGTTGGTGGTATGTAACGT
GACCGCAAGAAATACTACGTATGTAGCCTCCGCGTTCTGTGATTGGCCTC
ACTAATTTTTTTTTGTCTTATGTCTCTATAGGATTCGATAATTTGTCTGG
GTGTCTGCTATCCTTGCCATCCCGTGGATACTAACACCATCGTCGTGCCT
GGACTACAGTACTTTTTGTATCGTTTGTGTACCGTCTGAGTATTTGAATG
CATCTTGGAGTTGGCCGGAAGCGCTATGTTTTAGCATCACATAAGCTTCC
TCTGCGAGGCATCTACTGCTGTTCTTCTTTCTGCAGCACCAAGCTCTCTA
GCTATCACACCGACTAGCACAGGTGGGCGCCAACCTCTGCTGCCACAGGC
TAGGGTATGTAGATCTCGAAGGTGGAGCGTGTCCCCGTAAGGCCCGCCCT
GCGAACCAAAACATGCACACAGTAGTTCTCGAACTTGATGAAAGTCTTCG
GTTTGCCAAGCAACCAGGTGGCTGTTATTTCGGACGCGTCTGATGGGGCG
TGTTGCGTTAGCATACTTCTGGCAGCCCTGTACTCCATCAATAATACGTG
TTTGCTGGTTCTACCTTCACCACGCCGACTACTTCGCGGCCGACTTTGGG
GTAGCATGTCTACTGAGTTCGGTGCACTCCAATTACATATGTTCTGCAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9681:2569..4767+

>mRNA_Ecto-sp8_S_contig9681.31387.1 ID=mRNA_Ecto-sp8_S_contig9681.31387.1|Name=mRNA_Ecto-sp8_S_contig9681.31387.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9681:2569..4767+ (Ectocarpus species8 EcLAC_412)
ATGGGGGCCGGGGGAGGTGCTCTCGCGGTGCCGATTGGAACACAGGAAGT
ATCGGGTGAGGACCTCTCGAAAGTCGTGGACGCCAAAATCAAGCTAGAGG
GAAACGACGGTCGTGACGGCAGCGGGGCCAACCGAAAACGCTCCCGGCCG
CAAGGCTCGGTGTCACCGTCTCCGAACGAGCCGGGATTCCGCGACTCAGA
CGCCGCTGGCGGCGACAGCGGCAGCGGTGGTAGACGTGGTGGTGCCCGTG
AAGCGGCCATGTACCTCGGAAGTGATGACGACGAAGGCATAGACGAAGAC
CGGACACCCGCGAAATCTCGGAGGAGAAGGGTTCGGAAGAAACCTGCTGC
ATCGACCGCTATTGCCGAAGGAGGCGGGGGCGGTGATGGCAACCATGGCT
CAGGAGGAGCGGCGGCGGCGGTGCCAGCGGATAGCCGGCCGACACAGACC
ACATTTGCATGGACAGATATGCTGGTTGACGACGACAACTCGGACGACTT
GGACGGCATGCGCTAA
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