mRNA_Ecto-sp8_S_contig96310.31308.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig96310.31308.1
Unique NamemRNA_Ecto-sp8_S_contig96310.31308.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig96310.31308.1 vs. uniprot
Match: D7FHX5_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX5_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.790e-27
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    1 LPPDAVAESRGWLRAWSEEHQAHFFANQWTGNVTWDLPGPGGQGWSTPQEQV 156
            LPPDAVAESRGWLRAWSEEHQAHFFANQWTGNVTWDL GP G+GWSTPQEQV
Sbjct:  780 LPPDAVAESRGWLRAWSEEHQAHFFANQWTGNVTWDLLGPRGEGWSTPQEQV 831
[Close]
BLAST of mRNA_Ecto-sp8_S_contig96310.31308.1 vs. uniprot
Match: A0A6H5KHS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS3_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 9.640e-23
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 LPPDAVAESRGWLRAWSEEHQAHFFANQWTGNVTWDLPGPGGQGW 135
            LPPDAVAESRGWL AWSEEHQAHFFANQWTGNVTWDL GPGG+GW
Sbjct:  807 LPPDAVAESRGWLLAWSEEHQAHFFANQWTGNVTWDLLGPGGEGW 851
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96310.31308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHX5_ECTSI1.790e-2794.23WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KHS3_9PHAE9.640e-2393.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96310contigEcto-sp8_S_contig96310:48..206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145326.9525647-CDS-Ecto-sp8_S_contig96310:47..2061681145326.9525647-CDS-Ecto-sp8_S_contig96310:47..206Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig96310 48..206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96310.31308.1prot_Ecto-sp8_S_contig96310.31308.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig96310 48..206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig96310.31308.1

>prot_Ecto-sp8_S_contig96310.31308.1 ID=prot_Ecto-sp8_S_contig96310.31308.1|Name=mRNA_Ecto-sp8_S_contig96310.31308.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=53bp
LPPDAVAESRGWLRAWSEEHQAHFFANQWTGNVTWDLPGPGGQGWSTPQE
QV*
back to top

mRNA from alignment at Ecto-sp8_S_contig96310:48..206+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig96310.31308.1 ID=mRNA_Ecto-sp8_S_contig96310.31308.1|Name=mRNA_Ecto-sp8_S_contig96310.31308.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96310:48..206+ (Ectocarpus species8 EcLAC_412)
CTACCGCCGGACGCCGTGGCGGAAAGCAGAGGGTGGCTGCGCGCGTGGAG
CGAAGAGCACCAGGCTCATTTTTTCGCCAACCAATGGACGGGAAATGTGA
CGTGGGACTTGCCAGGTCCTGGGGGCCAAGGTTGGTCGACACCACAGGAG
CAAGTGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig96310:48..206+

>mRNA_Ecto-sp8_S_contig96310.31308.1 ID=mRNA_Ecto-sp8_S_contig96310.31308.1|Name=mRNA_Ecto-sp8_S_contig96310.31308.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp8_S_contig96310:48..206+ (Ectocarpus species8 EcLAC_412)
CTACCGCCGGACGCCGTGGCGGAAAGCAGAGGGTGGCTGCGCGCGTGGAG
CGAAGAGCACCAGGCTCATTTTTTCGCCAACCAATGGACGGGAAATGTGA
CGTGGGACTTGCCAGGTCCTGGGGGCCAAGGTTGGTCGACACCACAGGAG
CAAGTGTAA
back to top