mRNA_Ecto-sp8_S_contig9591.31240.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9591.31240.1
Unique NamemRNA_Ecto-sp8_S_contig9591.31240.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9591.31240.1 vs. uniprot
Match: D7FLZ5_ECTSI (40S ribosomal protein S4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLZ5_ECTSI)

HSP 1 Score: 475 bits (1223), Expect = 3.510e-169
Identity = 234/237 (98.73%), Postives = 236/237 (99.58%), Query Frame = 1 
Query:    4 GRGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKVRTDVNFPAGFMDVVQIQKSGDLFRLLYNTKGRFVLHRISEEESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFSMGHGTRAMVCI 714
            GRGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKVRTDVNFPAGFMDVVQIQKSGDLFRLLYNTKGRFVLHRISEEESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIF+MGHGTRAMV +
Sbjct:    2 GRGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKVRTDVNFPAGFMDVVQIQKSGDLFRLLYNTKGRFVLHRISEEESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTRAMVSL 238
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BLAST of mRNA_Ecto-sp8_S_contig9591.31240.1 vs. uniprot
Match: A0A835ZEV0_9STRA (40S ribosomal protein S4 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEV0_9STRA)

HSP 1 Score: 387 bits (995), Expect = 1.930e-134
Identity = 183/236 (77.54%), Postives = 209/236 (88.56%), Query Frame = 1 
Query:    7 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKVRTDVNFPAGFMDVVQIQKSGDLFRLLYNTKGRFVLHRISEEESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFSMGHGTRAMVCI 714
            RGPKKH+KRLNAPKHWLLGK+EGIWAPKPS GPH  RECLPL+II+RNRLKYALT +EANMICMQK +KVDGKVRTD+NFPAGFMDVV I+KS D FRLLYNTKGRFVLHR+ +EE+K+KLCRV KVE+SK KIP+LVTHDGRTIRYPDPL+KVND+IKVD+ETGK  D  K+EIGN+CMI+RG N GRVG +QHIERHPGSFDIV+VKD AG+VFATR  NIF +G  TR  + +
Sbjct:    2 RGPKKHLKRLNAPKHWLLGKLEGIWAPKPSCGPHNGRECLPLIIIVRNRLKYALTKAEANMICMQKHVKVDGKVRTDLNFPAGFMDVVSIEKSADQFRLLYNTKGRFVLHRVKDEEAKYKLCRVQKVEVSKKKIPFLVTHDGRTIRYPDPLVKVNDSIKVDVETGKMSDIYKYEIGNLCMISRGHNTGRVGTIQHIERHPGSFDIVTVKDSAGNVFATRQANIFVLGESTRPAISL 237
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BLAST of mRNA_Ecto-sp8_S_contig9591.31240.1 vs. uniprot
Match: A0A7S2WPT4_9STRA (40S ribosomal protein S4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPT4_9STRA)

HSP 1 Score: 369 bits (947), Expect = 6.870e-127
Identity = 171/236 (72.46%), Postives = 204/236 (86.44%), Query Frame = 1 
Query:    7 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKVRTDVNFPAGFMDVVQIQKSGDLFRLLYNTKGRFVLHRISEEESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFSMGHGTRAMVCI 714
            RGP+KH+KRLNAPK W+LGKMEGIWAP+PS GPH  RECLPL++I+RNRLKYALT+ E   ICMQ+L+K+DGKVRTD+ +PAGFMDVVQI++SGDLFRLLY+ KGRFVLHR+ E+E  FKLCRV KV++S  KIPY+VTHDGRTIRYPDPLIK NDT+KVDL TGK ID IKFEIG +CMI RGRNAGRVG++QH+E+HPGSFD+++VKD AG VFATRL NIF +G   +  V +
Sbjct:   19 RGPRKHLKRLNAPKAWMLGKMEGIWAPRPSAGPHKLRECLPLILILRNRLKYALTLQEVKAICMQRLVKIDGKVRTDMGYPAGFMDVVQIERSGDLFRLLYDVKGRFVLHRVKEDEGSFKLCRVMKVDVSAKKIPYVVTHDGRTIRYPDPLIKANDTVKVDLATGKIIDHIKFEIGRLCMIQRGRNAGRVGVIQHVEKHPGSFDMITVKDAAGKVFATRLGNIFVIGDDKKPWVSL 254
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BLAST of mRNA_Ecto-sp8_S_contig9591.31240.1 vs. uniprot
Match: W7TUQ1_9STRA (40S ribosomal protein S4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUQ1_9STRA)

HSP 1 Score: 356 bits (913), Expect = 5.470e-122
Identity = 167/238 (70.17%), Postives = 202/238 (84.87%), Query Frame = 1 
Query:    7 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKVRTDVNFPAGFMDVVQIQKSGDLFRLLYNTKGRFVLHRISE--EESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFSMGHGTRAMVCI 714
            RGPKKH+KR+NAP+HW+L KM+GI+AP+PS GPH  RE LPL++I+RNRLKYALT +EAN ICMQKL+KVDGKVRTD+NFPAGFMDV+ I+KSGD FRLLY+ KGRF L R+ E  EE  FKLCRVNK EMS NKIPY+VTHDGRTIRYPDPLIK++DT+KVD+ TGK +D IKF++GN+  + RG N GRVG++QHIERHPGSFDI++VKD  GH FATR QN+F +G G + MV +
Sbjct:    3 RGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNFPAGFMDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMVSL 240
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BLAST of mRNA_Ecto-sp8_S_contig9591.31240.1 vs. uniprot
Match: A0A7S2HY22_9STRA (40S ribosomal protein S4 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HY22_9STRA)

HSP 1 Score: 353 bits (905), Expect = 9.340e-121
Identity = 163/236 (69.07%), Postives = 198/236 (83.90%), Query Frame = 1 
Query:    7 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKVRTDVNFPAGFMDVVQIQKSGDLFRLLYNTKGRFVLHRISEEESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFSMGHGTRAMVCI 714
            RGPKKH+KRLNAP+HW LGKM GIWAPKPSPGPH  RECLP+ I++R+RLKYALT  E   ICM++ +KVDGKVRTD NFPAGFMDV++++KSGD FRLL++TKGRFVLHRI+ EE+ +KLCRVNKV +S NKIP  VTHDGRTIRYPDP +KVND++KVD+E+GK  D +KFE+G++ MI RGRNAGRVG + HIE+H GSFDIV+VKD  GH F+TRLQN+F +G G    V +
Sbjct:    3 RGPKKHLKRLNAPRHWNLGKMRGIWAPKPSPGPHKQRECLPITIVLRDRLKYALTNKECMQICMERCVKVDGKVRTDHNFPAGFMDVIELEKSGDRFRLLFDTKGRFVLHRINREEASYKLCRVNKVFVSANKIPVAVTHDGRTIRYPDPDVKVNDSVKVDIESGKMSDILKFELGSMVMITRGRNAGRVGTLMHIEKHEGSFDIVTVKDTKGHTFSTRLQNVFVIGSGNHPQVTL 238
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BLAST of mRNA_Ecto-sp8_S_contig9591.31240.1 vs. uniprot
Match: A0A2D4CA31_PYTIN (40S ribosomal protein S4 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2D4CA31_PYTIN)

HSP 1 Score: 349 bits (895), Expect = 3.330e-119
Identity = 161/236 (68.22%), Postives = 196/236 (83.05%), Query Frame = 1 
Query:    7 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKVRTDVNFPAGFMDVVQIQKSGDLFRLLYNTKGRFVLHRISEEESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFSMGHGTRAMVCI 714
            RGP+KH+KR++APKHW+LGK++GIWAP+PS GPH  RECLPLVII+RNRLKYALT  E   ICM KL+KVD K+R D +FPAGFMDV+++ KSGD FRLLY+TKGRFVLHRI+ EE K+KLC+V + E +K  IPY+ T+DGRTIRYPDPLIKVNDT+KVDLETGK +D IKFE GN+ M+  GRNAGRVGI+ HIERH GSF+I  +KD AGH FATRL N+F +G+ +R  V +
Sbjct:    3 RGPRKHLKRMSAPKHWMLGKLDGIWAPRPSSGPHKLRECLPLVIILRNRLKYALTKKEVTAICMNKLVKVDNKIRVDPDFPAGFMDVIELPKSGDAFRLLYDTKGRFVLHRINNEEKKYKLCKVTRQEYTKKAIPYIATNDGRTIRYPDPLIKVNDTVKVDLETGKVVDFIKFETGNLVMVTGGRNAGRVGILHHIERHEGSFNIAHIKDSAGHAFATRLGNVFVIGNESRPSVSL 238
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BLAST of mRNA_Ecto-sp8_S_contig9591.31240.1 vs. uniprot
Match: F0WD75_9STRA (40S ribosomal protein S4 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WD75_9STRA)

HSP 1 Score: 344 bits (882), Expect = 2.950e-117
Identity = 155/236 (65.68%), Postives = 195/236 (82.63%), Query Frame = 1 
Query:    7 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKVRTDVNFPAGFMDVVQIQKSGDLFRLLYNTKGRFVLHRISEEESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFSMGHGTRAMVCI 714
            RGP+KH+KRL+APKHW+LGK++G+WAP+PS GPH  RECLPL+II+RNRLKYALT  E  MICMQK +KVDGK+R D NFPAGFMD+V+I KSGD FRLLY+TKGRFVLHR++ EE K+KLC+V + E +K  IPY+ T+DGRTIRYPDPL+K NDT+K+DLETGK +D IKFE GN+ M+ RGRN G VG++  IERH GSF I  ++D  GH FATRL N+F++G+G+R  + +
Sbjct:    3 RGPRKHLKRLSAPKHWMLGKLDGVWAPRPSSGPHKLRECLPLIIILRNRLKYALTKQEVTMICMQKAVKVDGKIRVDPNFPAGFMDIVEIPKSGDQFRLLYDTKGRFVLHRVNHEEKKYKLCKVIRQEYTKKGIPYVATNDGRTIRYPDPLVKSNDTVKIDLETGKIVDFIKFETGNLVMVTRGRNTGIVGMLHQIERHEGSFSIARIRDSTGHEFATRLGNVFAIGNGSRPWISL 238
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BLAST of mRNA_Ecto-sp8_S_contig9591.31240.1 vs. uniprot
Match: M4BHJ4_HYAAE (40S ribosomal protein S4 n=21 Tax=Peronosporaceae TaxID=4777 RepID=M4BHJ4_HYAAE)

HSP 1 Score: 340 bits (872), Expect = 9.810e-116
Identity = 159/236 (67.37%), Postives = 196/236 (83.05%), Query Frame = 1 
Query:    7 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKVRTDVNFPAGFMDVVQIQKSGDLFRLLYNTKGRFVLHRISEEESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFSMGHGTRAMVCI 714
            RGP+KH+KRL+APKHW+LGK++GIWAP+PS GPH  RECLPL+II+RNRLKYALT  E  MICMQK +KVDGKVR D +FPAGFMDVV++ K+ D FRLLY+TKGRFVLHR+S+EE K+KL +V + E +K  IPY+ T+DGRTIRYPDP+IKV DT+K+DLETGK +D IKFE+GN+  I RGRN+GRVGI+ HIERH GSF+I  VKD AG+ FATRL N+F +G  +R  V +
Sbjct:    3 RGPRKHLKRLSAPKHWMLGKLDGIWAPRPSSGPHKLRECLPLIIILRNRLKYALTKQEVTMICMQKSVKVDGKVRVDPDFPAGFMDVVELPKTDDQFRLLYDTKGRFVLHRVSDEEKKYKLAKVIRQEYTKKAIPYIATNDGRTIRYPDPVIKVGDTVKIDLETGKVVDHIKFEVGNLVTITRGRNSGRVGILHHIERHQGSFNIAHVKDSAGNDFATRLGNVFVVGKESRPWVSL 238
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BLAST of mRNA_Ecto-sp8_S_contig9591.31240.1 vs. uniprot
Match: A0A485LNB5_9STRA (40S ribosomal protein S4 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNB5_9STRA)

HSP 1 Score: 340 bits (871), Expect = 1.490e-115
Identity = 157/236 (66.53%), Postives = 196/236 (83.05%), Query Frame = 1 
Query:    7 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKVRTDVNFPAGFMDVVQIQKSGDLFRLLYNTKGRFVLHRISEEESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFSMGHGTRAMVCI 714
            RGP++H+KR++APKHW+LGK++GIWAP+PS GPH  RECLPL+II+RNRLKYALT  E  MI MQKL+KVDGKVR D N+PAGFMDVV+I KSGD+FRLLY+TKGRFV+HRI+EEE K+KL +V + E++   IP++ T+DGRTIRYPDPLI+VNDT+K+DLETGK +D IKFE GN+ MI RGRN GRVGI  H+ERH GSF+IV VKD  G  FATR+ N+F++G   R  + +
Sbjct:    3 RGPRRHLKRMSAPKHWMLGKLDGIWAPRPSSGPHKLRECLPLIIILRNRLKYALTKQEVTMIAMQKLVKVDGKVRVDPNYPAGFMDVVEITKSGDVFRLLYDTKGRFVIHRINEEEKKYKLAKVIRQELTDKAIPFIATNDGRTIRYPDPLIRVNDTVKIDLETGKVVDFIKFEAGNLVMITRGRNTGRVGIFHHLERHSGSFNIVHVKDSTGADFATRVGNVFAIGKENRPWISL 238
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9591.31240.1 vs. uniprot
Match: A0A067CQF7_SAPPC (40S ribosomal protein S4 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CQF7_SAPPC)

HSP 1 Score: 339 bits (870), Expect = 2.120e-115
Identity = 160/236 (67.80%), Postives = 193/236 (81.78%), Query Frame = 1 
Query:    7 RGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKVRTDVNFPAGFMDVVQIQKSGDLFRLLYNTKGRFVLHRISEEESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFSMGHGTRAMVCI 714
            RGP+ H+KR++APKHW+LGK++GIWAP+PS GPH  RECLPL+IIIRNRLKYALT  E  MICMQKL+KVDGK R D NFPAGFMDVV+I KSGD+FRLLY+TKGRFVLHRI+EEE K+KL +V + E +  +IPY+ T+DGRTIRY DPLIKVNDT+K+D+ETGK +D IKFE G + MI RGRNAGRVGI+ HIERH GSF+I  +KD  G  FATR  N+F++G   R  V +
Sbjct:    3 RGPRHHLKRMSAPKHWMLGKLDGIWAPRPSSGPHKLRECLPLIIIIRNRLKYALTKQEVTMICMQKLVKVDGKTRVDPNFPAGFMDVVEITKSGDVFRLLYDTKGRFVLHRINEEEKKYKLAKVTRQEFTAKQIPYVATNDGRTIRYADPLIKVNDTVKIDIETGKVVDFIKFETGAMVMITRGRNAGRVGILHHIERHAGSFNIAHIKDTTGAEFATRQGNVFAVGKDGRPWVSL 238
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9591.31240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLZ5_ECTSI3.510e-16998.7340S ribosomal protein S4 n=2 Tax=Ectocarpus TaxID=... [more]
A0A835ZEV0_9STRA1.930e-13477.5440S ribosomal protein S4 n=2 Tax=Tribonema minus T... [more]
A0A7S2WPT4_9STRA6.870e-12772.4640S ribosomal protein S4 n=1 Tax=Rhizochromulina m... [more]
W7TUQ1_9STRA5.470e-12270.1740S ribosomal protein S4 n=2 Tax=Monodopsidaceae T... [more]
A0A7S2HY22_9STRA9.340e-12169.0740S ribosomal protein S4 n=1 Tax=Helicotheca tames... [more]
A0A2D4CA31_PYTIN3.330e-11968.2240S ribosomal protein S4 n=3 Tax=Eukaryota TaxID=2... [more]
F0WD75_9STRA2.950e-11765.6840S ribosomal protein S4 n=1 Tax=Albugo laibachii ... [more]
M4BHJ4_HYAAE9.810e-11667.3740S ribosomal protein S4 n=21 Tax=Peronosporaceae ... [more]
A0A485LNB5_9STRA1.490e-11566.5340S ribosomal protein S4 n=1 Tax=Aphanomyces stell... [more]
A0A067CQF7_SAPPC2.120e-11567.8040S ribosomal protein S4 n=3 Tax=Saprolegniaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9591contigEcto-sp8_S_contig9591:266..6652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score465.7
Seed ortholog evalue1.3e-128
Seed eggNOG ortholog2880.D7FLZ5
Preferred nameRPS4X
Model size714
KEGG koko:K02987,ko:K22377
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000822,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005856,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007010,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009636,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022626,GO:0022627,GO:0030029,GO:0030036,GO:0030684,GO:0030686,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034248,GO:0034250,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0035770,GO:0036094,GO:0036464,GO:0042127,GO:0042221,GO:0042493,GO:0042886,GO:0043009,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043178,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045471,GO:0045727,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0060255,GO:0060322,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097305,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1990904,GO:2000112
Exons7
EggNOG free text desc.rRNA binding
EggNOG OGsCOG1471@1,KOG0378@2759
Ec32 ortholog description40S ribosomal protein S4
Ec32 orthologEc-22_000290.1
EC2.3.2.27
Cds size690
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9591.31240.1prot_Ecto-sp8_S_contig9591.31240.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9591 266..6628 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145321.4255767-CDS-Ecto-sp8_S_contig9591:265..3801681145321.4255767-CDS-Ecto-sp8_S_contig9591:265..380Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9591 266..380 -
1681145321.4498496-CDS-Ecto-sp8_S_contig9591:780..9141681145321.4498496-CDS-Ecto-sp8_S_contig9591:780..914Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9591 781..914 -
1681145321.4637175-CDS-Ecto-sp8_S_contig9591:1269..13501681145321.4637175-CDS-Ecto-sp8_S_contig9591:1269..1350Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9591 1270..1350 -
1681145321.475639-CDS-Ecto-sp8_S_contig9591:2909..30311681145321.475639-CDS-Ecto-sp8_S_contig9591:2909..3031Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9591 2910..3031 -
1681145321.4872656-CDS-Ecto-sp8_S_contig9591:5027..50761681145321.4872656-CDS-Ecto-sp8_S_contig9591:5027..5076Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9591 5028..5076 -
1681145321.4991722-CDS-Ecto-sp8_S_contig9591:5929..60521681145321.4991722-CDS-Ecto-sp8_S_contig9591:5929..6052Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9591 5930..6052 -
1681145321.509454-CDS-Ecto-sp8_S_contig9591:6562..66281681145321.509454-CDS-Ecto-sp8_S_contig9591:6562..6628Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9591 6563..6628 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145321.5245254-UTR-Ecto-sp8_S_contig9591:6628..66521681145321.5245254-UTR-Ecto-sp8_S_contig9591:6628..6652Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9591 6629..6652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9591.31240.1

>prot_Ecto-sp8_S_contig9591.31240.1 ID=prot_Ecto-sp8_S_contig9591.31240.1|Name=mRNA_Ecto-sp8_S_contig9591.31240.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=230bp
MKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTM
SEANMICMQKLIKVDGKVRTDVNFPAGFMDVVQIQKSGDLFRLLYNTKGR
FVLHRISEEESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVND
TIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIV
SVKDGAGHVFATRLQNIFSMGHGTRAMVCI
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mRNA from alignment at Ecto-sp8_S_contig9591:266..6652-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9591.31240.1 ID=mRNA_Ecto-sp8_S_contig9591.31240.1|Name=mRNA_Ecto-sp8_S_contig9591.31240.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=6387bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9591:266..6652- (Ectocarpus species8 EcLAC_412)
CAGGGTCGCGGCCCCAAGAAGCACATGAAGCGTCTGAACGCGCCCAAGCA
CTGGTTGCTGGGCAAGATGGAGGGCATCTGGGCCCCCAAGGTACGATCGC
TGCTGCTGTTGCCAGCACTCGTGATGCATGACAAGCGCGATGGCTTTCAA
TCCCCACGACGAACTGTTGAAGAAGCCGGACCATTGGATTATTGGGCCGC
TGACTAGGCTATTGGTTTGATTACGGCTTCTATAGGCTGTGCTTGTTGTA
GCGTGCGTGTGTCGCTAAGCAACACGTTCCCTTCCGGAGTTGGTGTAGTG
TGTCGTCTGGGTTACGGTTTCGTTTGCCTGTGGAACATTCACGAAGTTGT
TATCTTCATGCGGGAAAGCTCCAATATGGTCTGTGGCTGTGGAAACCGGC
AAATTTTCAAATTTTGCGTGGAAACGATCAACAGCAACGGAGCTCGATAC
TACACCTGAGTTCTTCGCGAACACTGAGGTCGACCTGCAACAGTTGCCGC
GAGAAAATGATTGAAAACTTTTGTGCACCGTCTCGAAAGAGACTCTCTTG
GTCGAAGGGCGAACGACTAAAGCCAACCCCCCCCCCCCCCGTTCCTGCAG
CCCTCCCCGGGACCCCACCTCAACCGGGAGTGCTTGCCGCTGGTGATCAT
CATCCGCAACCGGCTCAAGTACGCGCTCACCATGTCGGAGGCGAACATGA
TCTGCATGCAGAAGCTCATCAAGGTGTGTGCATGCCCTCTGTCTCACACT
GTAGTGTTACAGCAGCAGGAGCTTTTTGTGTTCCGATTAGGTGGCACACT
TGTTGAGACAGGCGGCGTTAGTATCGTTTAGTGCGGGCAGTGTCGGTTGT
GGTGCTGATTGTCGTGTTGTTAATGCCGTCGCATGGCAGAAGACAGAGAT
GTTCAACCCGGGCACGACTCCCAATTGTTGTGACGAGGCCATGTGTAGGG
CGAAATGACGCGTCCGGTAACTGCGGACAACGGTGGCAGCCACGAAAGCG
GGCTGATACAGTGTTTGAAGAGATGGAGTGAAAACTCTCCCCCCTCTATC
CAAGTGTTACGTTCCTACGATAGCTTTTCGGAAAACGCTCAACAAACGCT
GTGATGTTGCTATTTAGGTCACGCCAAATGTCTTGGCACTAGTGCTGCTT
CTCCATACAGCTACGTACGCGGCGTTATAAGGGTGCGTTTGCCATCGATT
CGTACATGTGGACATATCGTCGTCGTGTGACTGATTGGCGCGTAGTGCTG
CGCAGGAGGTGTATGGCATCGCAGGCCCTTTGTACCATTGCCCTCCGGAG
GTCCCCGTCACAACCAGCCCCCACTTCCAGATCCAGCTGTTTGTGTGATT
GGGAACCCACCTCCCCCTTGCTTGCATCAAGTCGAATTGTCCCCCCCCCT
TCCTTCGTGTTTTCCAGCCCCTCCCGTGGTGGAGCCTTCAATAAACTTTG
TCTTTCAACGTTTGCCTTGCGGCTCTTTCCGTGCGTTGCGTGACTTTTGG
TGCTCCCTCTCTCTCTGTGTGTGTTACACATGATTACCTTCGACATACTC
TGCTTTTTTTTGTTTTGTTTTTTCAGGTGGACGGCAAGGTCCGCACTGAT
GTCAACTTCCCGGCAGGGTTCATGGGTGAGTTAGGCAGTGAGGAAACCTT
TCTCGAGTTGTTGGCTAATCAGTTTTGCGAGAGATGGTGTCCACACGCGT
TTTTGTTTACGGTTTGCGTGCGCACATCTGGCAGAAAACACTTCCTTGTC
CCGATTTACCAGGAAGACAACGACATGTATTACATGCGTACCATACCATC
CAAACATGTTTTCATGTGCACCACGCCTGCATACCCCTCGAAGTAGAATA
ATGGAATGTGGATGTTGGTGTTGATTTGGTTCTTGCCATCGCGCGGAAAG
AGGGAGCCGTCCTGTGATTACAAATCTATGCACCACTCCAGAATGTGAAC
GTGTGGAGAAAACACCTGATCACCATCTTTCGTATGAGGACGCTCGGATC
TTTCGTTTTCTGTGGATTGTCACCAAGACAGGGAACTGGTGGGGATGGGT
GTCATGGGTTAGTCGCCCTTGCCTATGCACACACCCTCCAGACCTTCGAC
TAAAATTGCTGAGCCTTTGCGTGGTCTTTCATAGCCCAAACGAAAGTTTG
TCTATCTTGTCAACGGACAAAAATCTCGATCAATCTCGCAGGCGCAACCG
TCCGACCGTCGCGCCTGCGATTGAAGGAGATTTTTGTCTCCCTACGAAAT
AGACCATTCCGTTTGTCCTATGCACTACTTCCCCAAAGGCTCCACAATTT
TAGTCAAAGGTCTGGCGGGTGTGTGCGTAGGCAAAGATGTCAGCTGATGC
TTGTCGCTGCACCCGCACGTGAATGGTTTCGTTTTGCTCTTCGGCTGCCC
CATGATGGTGCGGTTTCGCCCTGGTAAATATCCATAAAGAGAACCCGTAC
GCATGTGGATGTACGAGCCCGAAAGGGAGTCTTGTAGCGTGTTTTAGGCT
GCCGCGAGGCAGAGAGCCGTCCTGTGATTACAAATCTATGCACCACTCCA
GAATGCAAACGTGTGGAAAAAACACCTGATCACCATCTTTCGTATGAGGA
CGGCTCGGATCTATTTATTTTCGTGGTTTGTAACCAAGCCAGGGAACTGG
CGGGGATGGATGTCATGGGTCCAGTCACCCTTACCTATGCACACCCTCCA
GACCCTCGACTTTAATTGCCGAGCGTTTGGGTTGGTCTTGCATAGCCCAA
ACCGAAGTTGGTCTATTTCCTCAAGGCACAATAATCTCGATCAATCGCGC
GCGCGACCGTGCTACCGTCGCGAATGCGATTGATGGAGATTTTTGTCTCT
TGAAATAGACCAACTTCCGTTTGTCCTATGCACTACTTCCCCAAAGGCTC
CGCAGTTTTAGTCAAAGGTCTGGAGGGTGTGTGAAGATGTCAGCCGATGC
TTGTCGTTACACACGCATAGCAGTTGATGGTTTCGTTTTGCTCTTCGGTT
GCCCCATGATGGTGCAGTTTCACCATGGTTAATATCCACAGAGAATATCC
GTATGCAGATGGATGTGCGAGCCCGAGAGGGAGTCTTGTAGCGTGTTTTG
GGCTGCTCTTTTTTCTCCGATTAGGCTGCCGCGAGACTAAGGGCCCGTCC
TGTGATTACAAATCTATGCACCACTCCAGAAGGCGAACGTGTGGAAAAAA
CACCTGATCACCATCTTTCGTATGAGGACGTCTATACGCGTGTTTCGGTC
GCATAGCATTACTGCTGTGGCTAGCCAGCTTCTCAATTGTACGCGTGTTG
AGGTGTCGATATCGTACCATGTTTTGGTAAACCTCACTTAAAAAAAATTG
GGCCTGATGCAGACGCACAAAGTATTAACCATTGCTTCTTTCTTTGTGTT
GGGTTTTCGATAAACGGTACTTGTACTTGTTATGAACATTTCCCTTCCCC
TGTGTTTGTAAACCTCAAGTACAAAGTCGGAACCTTGAACGCAAGTACAT
GAAACAATCACCATCAGTGTTTTCCGGCCGTGTCCGTCCCGTTTCGATTT
GTAAACTCTCCCGCTCTCATGTCCTCGAAACCGTCATTGCATTCCCGTCC
AATATTGACAATGGCTACCAGACGTGGTGCAGATCCAGAAGTCTGGCGAC
CTGTTCCGGTTGCTGTACAACACCAAGGGGCGCTTCGTGCTGCACCGCAT
CTCCGAGGAGGAGAGCAAGTTCAAGCTCTGCCGCGTCAACAAGGTATAGT
ACGGTACACCACCGCGTCAGGTGGACCCGTAAGGACATTAGAAGGTTCTG
AGCGGAGACCTGAATGGTTTTGATGTGAAGACAGCAACAACAACAACCAC
CATTTGGTGCCACAGAAGGTTCCAGCACTGGAGAATCTCTTGTTTTGAGC
CTCAGCACATCCCCCCTCGGCGACTAATTGTAAAGCATTGAGTGTAGGCT
TCTTGACGGAGCAACTGTGTCTACAACCAAGTTCTTGGATTGTTTAAGGC
GCAAGTTCTTACAAGTGGTGGCGCGTTCTCTGTTTTTTAGAAAGTGCATA
CGATACAATCAGAGAAATAGTACCCGTGGGAGGTATAACCACAGACAGCG
GAAGGGGATGGGTTTAAGTTCCTTCGGGGAAAAACCGGCTGGATACTGGA
ATGTACCGCATGTTTTGTGGAAGCGTCTGTGGTTGTGTGTAATTATTTGC
GCGATGAGGAAAGCATGAACTTCCGCCGTTTCTGAAGGCCTCGTACTTGT
GCTTGTTTTAAGCTAAAGTCAGGCCCTGTGCTGGACACTGAAGTTCCTGA
GCGCTGTTTTGTACCGCAAGTTTTCTGGAAGCGTCTGTGGTTGTGTGTAG
GTACTCGCGCAATGAGGAAAGCATGAACTTCCGCCGTTTCTGAAGGCTTG
TACTTAGGCTTGTTTTAAGCGGAAGTCGGGCCCTGTGCTGGACACTGAAG
TTCCTGAGCGTTGTTTTGTACTTGTAGCTTTTTTGCTTTGGTTTCTTCGG
GATGTTGTCTAAGCCCCTGGGTGAAAGACGAATAAACCTAGTGGTTCGCG
CCCGTGCTAACCGTGGATGACCCGTTTTTGAGTTCAGCCACCGGCGATGT
CAACCGTTTAGAAAAACACAAGGATGTTCAACATCAATATTGCCGTCGGT
TGTTTTTTCGGTTTTTCCAGTTGTGGATCTCGATGTCCCGAGTACGAGAC
TAGCGTTTCTCTGATGTGGACACCGCCCGATCGATTGCTTTGGTTCATTT
CTGCGTTTGGTATACGCATGAGACCAGATACTAAATTAACAGCAATCCAC
CTGCTGATGCTGGGGTGTTTGTATCTTGTTTGTGGTGTTTCGTGTTTGAA
TGACGGTTCGTACCTGCGGATGCTGGGACGAATGTTTCATCAGAAGATAT
TATTTTCCCCAAATTGTATTAGGTCAGTTTTCCCCAAAAATGTCTGCCCC
GTAACACACAAAAAATACGCGGTCATAATTTACGGTTGAATATTTTTCCG
TGGGGATCGCGCGACTCATGAACCATCTCGCTCGTGACGCTTAACCACTA
CACCAAACATACTCACTCGTTGTGTCGATGTACGTTGGCACCTACCGCTG
TGCAAGTATCGTATCTGTCTTTTCCCTTTCTCGCAACAAGCCACCCTTGT
GCCCTTGGTAGATTAGCTATTTAGTCGAAGTTCTGACGGCTTTTGATGTT
GGGTGTTGTTGTCGACACGCCGTCTGTCAGATGTCATTTATAACTGGATC
TGGCTCTTGATGTTTGGTGTTGTTGTCGACACGCTGTCTGTCTGTCTGTC
AGGTGGAGATGTCGAAGAACAAGATCCCCTACCTCGTCACCCACGACGGA
CGCACCATCCGTTACCCGGACCCCCTGATCAAGGTATCCTACATAAGTAA
TGCTATCTATCTCAATATGAAGAGAGTACGAATACAAGGAGATAAATCCT
AAGTATAGTACACAGCACTGCACGACCGTTGGAGAGTCGGATATATACCA
GAACCAGCGAGTGACGTTTGAGAGTAGGGCTACAAAGGGTGTGTTCTGCC
TCGGTTCCAGTTCCGCGAACGATATATAGCAAAAGACGTGAGGGAAGAGA
ATGCGGCGGCCTTCTTTCACGGGGCGCGATGATGGTGTGCAAGGCACAGC
GTTCAAAGTGGTTTTCACGACTCACAACATGATCACGATGTCATGGCCTG
CGTAACGGACATGCTGTCCATCCTGTCCATCCATCCAGGTCAACGACACG
ATCAAGGTGGACCTCGAGACCGGAAAGGCGATCGACACCATCAAGTTCGA
GATCGGCAACGTGTGCATGATTGCGAGGGGTCGCAACGCTGGCCGCGTGG
GCATCATGCAGCACATCGAGAGGTATGATACGCGTCGGTGTTTTTTTTGT
TTGGCATCGACCGCGCTAACCGGCTCACCAACGGAGATACGTCTGTCCAG
CTGCTTGTTTTTTTTGTAACTCTTACTCTGATGATCTACCCGCTACCCGA
TTATCCGGTGAAAAGAAGAGAGTCTTCGTAGGGTTGAAGACGGAAAATAA
CATCATCTGGGGACGGGCGGCGGTGCGGTCACAGACGTGTGTGTGCGCAT
GTTTCGGTTCAATAATAATTAGAAGTACTTGACATATACCGTACTACCCG
TCCGTAGATGATCACTGTCAGTTATTGGTTGTTCTGACTCGTCCACTCAC
ACCCGTCCCTTGTCTGCGGTTCCGGGCTGCCTTCCTTCCACCCCTCACGA
ACGCCTTTTCGTTTCCAAACAGGCACCCCGGTTCGTTCGACATCGTGTCG
GTGAAGGACGGAGCCGGCCACGTCTTCGCCACCCGCCTGCAGAACATCTT
CAGCATGGGCCACGGCACCCGCGCCATGGTATGCATA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9591:266..6652-

>mRNA_Ecto-sp8_S_contig9591.31240.1 ID=mRNA_Ecto-sp8_S_contig9591.31240.1|Name=mRNA_Ecto-sp8_S_contig9591.31240.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9591:266..6652- (Ectocarpus species8 EcLAC_412)
ATGAAGCGTCTGAACGCGCCCAAGCACTGGTTGCTGGGCAAGATGGAGGG
CATCTGGGCCCCCAAGCCCTCCCCGGGACCCCACCTCAACCGGGAGTGCT
TGCCGCTGGTGATCATCATCCGCAACCGGCTCAAGTACGCGCTCACCATG
TCGGAGGCGAACATGATCTGCATGCAGAAGCTCATCAAGGTGGACGGCAA
GGTCCGCACTGATGTCAACTTCCCGGCAGGGTTCATGGACGTGGTGCAGA
TCCAGAAGTCTGGCGACCTGTTCCGGTTGCTGTACAACACCAAGGGGCGC
TTCGTGCTGCACCGCATCTCCGAGGAGGAGAGCAAGTTCAAGCTCTGCCG
CGTCAACAAGGTGGAGATGTCGAAGAACAAGATCCCCTACCTCGTCACCC
ACGACGGACGCACCATCCGTTACCCGGACCCCCTGATCAAGGTCAACGAC
ACGATCAAGGTGGACCTCGAGACCGGAAAGGCGATCGACACCATCAAGTT
CGAGATCGGCAACGTGTGCATGATTGCGAGGGGTCGCAACGCTGGCCGCG
TGGGCATCATGCAGCACATCGAGAGGCACCCCGGTTCGTTCGACATCGTG
TCGGTGAAGGACGGAGCCGGCCACGTCTTCGCCACCCGCCTGCAGAACAT
CTTCAGCATGGGCCACGGCACCCGCGCCATGGTATGCATA
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