mRNA_Ecto-sp8_S_contig9573.31205.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9573.31205.1
Unique NamemRNA_Ecto-sp8_S_contig9573.31205.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9573.31205.1 vs. uniprot
Match: A0A6H5L8Y3_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Y3_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 1.060e-58
Identity = 108/114 (94.74%), Postives = 110/114 (96.49%), Query Frame = 1 
Query:    1 LVSAASVEHGDDTEDTNEKLREATRNGAKRKARVLSKHRAVLARWTASPATGVNPRRQQHNGANGCSTGDSPAAPRYSGTRSSEDIPPVDTVADRSEEGRVQNDIVSPLLSLAS 342
            LVSAASVEHGDDTEDT+EKLREATRNGAKRKARVLSKH AVLARWTASPATGVNPRRQQHNGANGCSTGDSPAAPRYSGTRSSEDIP VD VADRSEE RVQN+IVSPLLSLAS
Sbjct:   13 LVSAASVEHGDDTEDTHEKLREATRNGAKRKARVLSKHHAVLARWTASPATGVNPRRQQHNGANGCSTGDSPAAPRYSGTRSSEDIPHVDAVADRSEEVRVQNNIVSPLLSLAS 126
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9573.31205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L8Y3_9PHAE1.060e-5894.74SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9573contigEcto-sp8_S_contig9573:556..2782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size344
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionMYND zinc finger and SET domain protein
Ec32 orthologEc-14_003800.1
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145319.0912886-CDS-Ecto-sp8_S_contig9573:555..8541681145319.0912886-CDS-Ecto-sp8_S_contig9573:555..854Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9573 556..854 -
1681145319.1062217-CDS-Ecto-sp8_S_contig9573:2739..27821681145319.1062217-CDS-Ecto-sp8_S_contig9573:2739..2782Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9573 2740..2782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9573.31205.1prot_Ecto-sp8_S_contig9573.31205.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9573 556..2782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9573.31205.1

>prot_Ecto-sp8_S_contig9573.31205.1 ID=prot_Ecto-sp8_S_contig9573.31205.1|Name=mRNA_Ecto-sp8_S_contig9573.31205.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=114bp
LVSAASVEHGDDTEDTNEKLREATRNGAKRKARVLSKHRAVLARWTASPA
TGVNPRRQQHNGANGCSTGDSPAAPRYSGTRSSEDIPPVDTVADRSEEGR
VQNDIVSPLLSLAS
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mRNA from alignment at Ecto-sp8_S_contig9573:556..2782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9573.31205.1 ID=mRNA_Ecto-sp8_S_contig9573.31205.1|Name=mRNA_Ecto-sp8_S_contig9573.31205.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2227bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9573:556..2782- (Ectocarpus species8 EcLAC_412)
CTTGTATCTGCGGCGTCGGTTGAGCATGGTGACGACACAGAAGGTATCGA
AGTCAGCATTCCCGCCGTAATTTAGCATGAACCTCTCGTTCCGAGTAGGA
CATGTGTAGTCGGAAGCTATGCACTTCTGCTGGTGCCGTGAGTGAAGGTC
AGACGGCCTGGACGGCTCCTATTTGCCAGGTCATAATGCAGCTGGGCTGT
AACACATATCTTTCTCGAACAACACAGCAGTTGGTGACACTAAACATGAA
GCACCGCCGAGAAACAAGAAAACAAAGAAGTCACGACCTGACAGTCCCGT
AATGTACTGTAGGCAGGACTAAACTGCTGGCCAAAACTGACTGGATGTGT
GTATGCATATGCATCGATGTAGTCTGACGAAGATCCCTCTTTGGGGCCTT
CTGGTGTGACGTGTGGAGGCTTTCGGGGCTCCAGATGTACCAACATCACT
GCTGTTTAGTTGATTTCTTGGAGTCATCTTCGACGTCGTTAGCTGCAGAT
TGTTCAGAGGAATAGGCACCTGCGTGCGCTCGCACACCCTGTTTACCCTG
AAAAGTGTGGTACCGACCATCCGTGCTCGCGAAAAAAGACTGTAAGTATC
ACCACATTTGCATCCTTGCGAGACTTCGTGCATGAATACTGATGCATGAC
TATTACTATTCCCTCTTGTCTAGTACGGGCTCGTCGCGCAGCGGATGCTC
GAGATATTCCCCGAGGCCAACATGCACCGAAGGAAATATGCACAGGTTAA
GATTACAGCAGTACCGCAATAGTATGCATACTAGAAGTGGAAAGGTGCAA
ATTTACCACTTAGCACTTCTATCGTCAATCGTCGCGTTTTTGGTTGTACG
AAAAATGGTGGTTCGACTTTCGTCCGGCTCGTAGTACGCAGTCCCTCCGC
AACAAGAATATCGCAAATAAATTTATTGTCAGCCACGAATAGGGGGCCTC
AGGGAGAGGAACCCTTCTGGCGACCACGGGTTGGAGTACGGCACAAATAA
ATGCTGTGAGCGTTGATTTGAAGTAGGGACAAAAAAAATGGCAGAGGGAC
TACAGCAGTCGGGACTACAGCAGTCCCTCCAAATAAATCGTAGATAGCCG
AGCTCCTTGCCACACAAAGGGTGACTTGGCTTCAGCATGCAAAGTGTCCC
CAAAAACACGGACACACTTTTCGTACTGAAGTCACGTGAGCAATTTTTTC
CAGTACCAGGCTATATACAGTTTCACCACGTAGGGGACACGTTTATCCTC
CCTTAGACCCCCTCGTCCCCATCCTGTGATGGTGGCCTTCACCTTTTGAG
ATTCGTCTGGAGAGATATAATGCCCATTTATCTACATAATAGGTGTTCAT
ATCAGCTGCCACAGTTGTTTTGTTCACGAGATGCACAACATCTTGTGGGT
GCTCTGCTCAAAACTATGACCGGATGTGCTCTCCAAGATGAAGAAACACC
GATTACTTTATTTTTTAACGGCTGAGCATGAAAATTCCAGAACGTTTTCA
AGCGTGCTCTAACGGCAATTCGAATCAGGTTAATGTAGAATGGTAAAAGT
CTAGCACTTCTTTGCAAACACAGGAAAGAGTGCGACCACGATCGTCATCG
CGGGCGTCAAAATCAGGAAAAGCCCGCGCGGCGCGTAACACCGTGAACTC
GGTTTAATTCGCGCCTCTTTGACCCCCTGTTTTTTTAACGCAGAACAGCA
TCCCAGGTGATGCTTTGCCGGGCTGCTTCAGGCTTGAAGTCATAGCCGGG
GATATCCCGAGGAGAAATGTAACCGCACCTGTCTGTTCCTGCGATACAAC
GTGCATCACCGGGTGAACGTGCTAACTGTTGTTGCCTAGTGTCAGCGCAC
GCTTGGAACTGACGTGCCTCTCCCCAAACACGCCTTCCAACACGCATGCA
TTTTCGTCCCGACCGACCGCCGCGTCAGACACGAACGAAAAGCTGCGCGA
GGCAACACGCAATGGTGCCAAGAGAAAGGCCAGAGTGCTGTCCAAGCATC
GCGCCGTTTTAGCGCGGTGGACGGCATCGCCGGCTACGGGCGTCAACCCC
CGACGACAACAACACAACGGGGCGAACGGTTGTAGCACGGGCGATTCTCC
TGCTGCGCCGCGCTATTCTGGCACGAGGTCCAGTGAGGATATACCCCCCG
TTGACACGGTGGCCGATCGAAGCGAGGAGGGTCGAGTTCAAAACGACATC
GTGTCGCCGCTGTTGTCGTTGGCGTCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9573:556..2782-

>mRNA_Ecto-sp8_S_contig9573.31205.1 ID=mRNA_Ecto-sp8_S_contig9573.31205.1|Name=mRNA_Ecto-sp8_S_contig9573.31205.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9573:556..2782- (Ectocarpus species8 EcLAC_412)
CTTGTATCTGCGGCGTCGGTTGAGCATGGTGACGACACAGAAGACACGAA
CGAAAAGCTGCGCGAGGCAACACGCAATGGTGCCAAGAGAAAGGCCAGAG
TGCTGTCCAAGCATCGCGCCGTTTTAGCGCGGTGGACGGCATCGCCGGCT
ACGGGCGTCAACCCCCGACGACAACAACACAACGGGGCGAACGGTTGTAG
CACGGGCGATTCTCCTGCTGCGCCGCGCTATTCTGGCACGAGGTCCAGTG
AGGATATACCCCCCGTTGACACGGTGGCCGATCGAAGCGAGGAGGGTCGA
GTTCAAAACGACATCGTGTCGCCGCTGTTGTCGTTGGCGTCC
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