mRNA_Ecto-sp8_S_contig95168.31105.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig95168.31105.1
Unique NamemRNA_Ecto-sp8_S_contig95168.31105.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig95168.31105.1 vs. uniprot
Match: D8LFK1_ECTSI (TTK-like n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK1_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 6.770e-47
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 YVRESRVLQYLSRPGGAAAGFVVQLLEAYSTPEHNFIAMEQGGQNLTARVEESKRLPPSERNTHLALWGQQACQVVVALHGLGV 252
            Y+RESRVLQYLSRPGGAAAGFVVQLLEAYSTPEHNFIAMEQGGQNLTARVEESKRLPPSERNTHLALWGQQACQVVVALHGLGV
Sbjct:  397 YLRESRVLQYLSRPGGAAAGFVVQLLEAYSTPEHNFIAMEQGGQNLTARVEESKRLPPSERNTHLALWGQQACQVVVALHGLGV 480
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BLAST of mRNA_Ecto-sp8_S_contig95168.31105.1 vs. uniprot
Match: A0A6H5KCK3_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK3_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.700e-45
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 1 
Query:    1 YVRESRVLQYLSRPGGAAAGFVVQLLEAYSTPEHNFIAMEQGGQNLTARVEESKRLPPSERNTHLALWGQQACQVVVALHGLGV 252
            Y+RESRVLQYLSRPGGAAAGFVVQLLEAYSTPE+NFIAME+GGQNLTARVEESKRLPPSERNTHLALWGQQACQVVVALH LG+
Sbjct:  497 YLRESRVLQYLSRPGGAAAGFVVQLLEAYSTPEYNFIAMEEGGQNLTARVEESKRLPPSERNTHLALWGQQACQVVVALHSLGI 580
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BLAST of mRNA_Ecto-sp8_S_contig95168.31105.1 vs. uniprot
Match: A0A6H5L6U0_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U0_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 7.980e-43
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:    1 YVRESRVLQYLSRPGGAAAGFVVQLLEAYSTPEHNFIAMEQGGQNLTARVEESKRLPPSERNTHLALWGQQACQVVVALHGLGV 252
            Y+RESRVLQYLSRPGGAAAGFVVQLLEAY+TPE+NFIAMEQGGQNLT RVEESKRLP SER THLALWGQQACQV+VALHGLGV
Sbjct:  543 YLRESRVLQYLSRPGGAAAGFVVQLLEAYTTPEYNFIAMEQGGQNLTVRVEESKRLPSSERKTHLALWGQQACQVLVALHGLGV 626
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig95168.31105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFK1_ECTSI6.770e-4798.81TTK-like n=2 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5KCK3_9PHAE1.700e-4594.05Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5L6U0_9PHAE7.980e-4391.67Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig95168contigEcto-sp8_S_contig95168:79..472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score170.6
Seed ortholog evalue3.1e-40
Seed eggNOG ortholog2880.D8LFK1
Preferred nameTTK
Model size253
KEGG koko:K08866,ko:K17388
KEGG Pathwayko04022,ko04024,ko04062,ko04071,ko04110,ko04111,ko04270,ko04310,ko04360,ko04510,ko04530,ko04611,ko04670,ko04810,ko04921,ko05130,ko05131,ko05132,ko05200,ko05205,map04022,map04024,map04062,map04071,map04110,map04111,map04270,map04310,map04360,map04510,map04530,map04611,map04670,map04810,map04921,map05130,map05131,map05132,map05200,map05205
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004712,GO:0004713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005819,GO:0005856,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007060,GO:0007088,GO:0007093,GO:0007094,GO:0007140,GO:0007143,GO:0007276,GO:0007292,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008284,GO:0009611,GO:0009888,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010562,GO:0010564,GO:0010604,GO:0010639,GO:0010646,GO:0010647,GO:0010862,GO:0010948,GO:0010965,GO:0015630,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016321,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018107,GO:0018108,GO:0018193,GO:0018209,GO:0018210,GO:0018212,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030071,GO:0031099,GO:0031101,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031577,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033313,GO:0033316,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0036211,GO:0040007,GO:0040020,GO:0042060,GO:0042127,GO:0042246,GO:0042325,GO:0042327,GO:0042592,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043515,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044380,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044446,GO:0044464,GO:0044703,GO:0044779,GO:0044877,GO:0045132,GO:0045786,GO:0045835,GO:0045839,GO:0045841,GO:0045930,GO:0045937,GO:0046777,GO:0046983,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048609,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051247,GO:0051321,GO:0051445,GO:0051447,GO:0051641,GO:0051704,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060249,GO:0060255,GO:0060393,GO:0065007,GO:0065008,GO:0070727,GO:0071173,GO:0071174,GO:0071459,GO:0071704,GO:0071840,GO:0072698,GO:0080090,GO:0090092,GO:0090100,GO:0098687,GO:0098813,GO:0140013,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1901993,GO:1901994,GO:1902099,GO:1902100,GO:1902102,GO:1902103,GO:1902850,GO:1903046,GO:1903047,GO:1903096,GO:1905132,GO:1905133,GO:1905359,GO:1905818,GO:1905819,GO:2000241,GO:2000242,GO:2000816,GO:2001251
Exons2
EggNOG free text desc.protein localization to meiotic spindle midzone
EggNOG OGsKOG0596@1,KOG0596@2759
EC2.7.11.1,2.7.12.1
Cds size252
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145311.5469985-CDS-Ecto-sp8_S_contig95168:79..1091681145311.5469985-CDS-Ecto-sp8_S_contig95168:79..109Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95168 80..109 -
1681145311.5611374-CDS-Ecto-sp8_S_contig95168:250..4721681145311.5611374-CDS-Ecto-sp8_S_contig95168:250..472Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig95168 251..472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig95168.31105.1prot_Ecto-sp8_S_contig95168.31105.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig95168 80..472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig95168.31105.1

>prot_Ecto-sp8_S_contig95168.31105.1 ID=prot_Ecto-sp8_S_contig95168.31105.1|Name=mRNA_Ecto-sp8_S_contig95168.31105.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=84bp
YVRESRVLQYLSRPGGAAAGFVVQLLEAYSTPEHNFIAMEQGGQNLTARV
EESKRLPPSERNTHLALWGQQACQVVVALHGLGV
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mRNA from alignment at Ecto-sp8_S_contig95168:79..472-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig95168.31105.1 ID=mRNA_Ecto-sp8_S_contig95168.31105.1|Name=mRNA_Ecto-sp8_S_contig95168.31105.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=394bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95168:79..472- (Ectocarpus species8 EcLAC_412)
TACGTCCGAGAGAGCCGCGTCCTTCAATATCTCAGTAGACCGGGGGGAGC
AGCGGCAGGGTTTGTGGTCCAACTGCTGGAGGCCTACAGCACGCCCGAGC
ACAACTTCATCGCCATGGAACAAGGGGGTCAGAACCTCACGGCGCGGGTG
GAGGAATCGAAAAGACTACCGCCTTCTGAGCGGAATACACATCTTGCGTT
GTGGGGACAACAAGCCTGTCAGGTAGATGCGCTGGCGTTGAGGAGTGTTT
TAACGCTGTATCTCGCGGCTTATATGTGAGCGAGCGAGGTGGGGAACACG
CATGTATTCTGCTACGGTAGCGATGAACACATGTTTACTCTTCGGGCCTT
TGGATTATTCCAGGTGGTGGTGGCTCTGCACGGCCTTGGGGTCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig95168:79..472-

>mRNA_Ecto-sp8_S_contig95168.31105.1 ID=mRNA_Ecto-sp8_S_contig95168.31105.1|Name=mRNA_Ecto-sp8_S_contig95168.31105.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp8_S_contig95168:79..472- (Ectocarpus species8 EcLAC_412)
TACGTCCGAGAGAGCCGCGTCCTTCAATATCTCAGTAGACCGGGGGGAGC
AGCGGCAGGGTTTGTGGTCCAACTGCTGGAGGCCTACAGCACGCCCGAGC
ACAACTTCATCGCCATGGAACAAGGGGGTCAGAACCTCACGGCGCGGGTG
GAGGAATCGAAAAGACTACCGCCTTCTGAGCGGAATACACATCTTGCGTT
GTGGGGACAACAAGCCTGTCAGGTGGTGGTGGCTCTGCACGGCCTTGGGG
TC
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