mRNA_Ecto-sp8_S_contig9501.31076.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9501.31076.1
Unique NamemRNA_Ecto-sp8_S_contig9501.31076.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9501.31076.1 vs. uniprot
Match: D8LFX6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFX6_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 2.620e-47
Identity = 82/89 (92.13%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:    1 MPSKCASPGCPTNPSFGLNDGKRKVLFCRGHAKEGMINVRDRTCCHPGGCPTRPSYAEAGSKKPEFXVLXXXXXTVDVLSRRCARKDCL 267
            MPSKCASPGCPTNPSFGLNDGKRKVLFCRGHAKEGMINVRDRTCCHPGGCPTRPSYAEAGSKKPEF VL     TVDVLSRRCARK CL
Sbjct:    1 MPSKCASPGCPTNPSFGLNDGKRKVLFCRGHAKEGMINVRDRTCCHPGGCPTRPSYAEAGSKKPEFCVLHAPKGTVDVLSRRCARKGCL 89
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BLAST of mRNA_Ecto-sp8_S_contig9501.31076.1 vs. uniprot
Match: A0A6H5JT55_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT55_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.190e-33
Identity = 114/183 (62.30%), Postives = 119/183 (65.03%), Query Frame = 1 
Query: 1156 AAATAAAAPSQTLAANGEIGSLGDEAPAASEATALAPTPTPEEPATAIAEAAAPEPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEPRVQGGDGGAGDAAAFEAAPDSDGTESDIDVCGPGRRRPGDXXXXXXFGLNRRGAAGLGGSDYIVQPEGHVRV*VQDYPYCLG---GRG--LCVC 1689
            AAATAAAAPSQTL ANGEI SLGDEAPA+ E TALAP PTPE+PA                             XXXXXXXXXXXX     QGG    GDAAA EAAPDSDGTESDIDVCGPGRRRPGD      FGLNRRGAAGLGGSDYIV+PEGHVR    D+    G   GR   +CVC
Sbjct:  339 AAATAAAAPSQTLVANGEIISLGDEAPASPETTALAPPPTPEKPAX----------------------------XXXXXXXXXXXXXXXXXQGGXX-XGDAAALEAAPDSDGTESDIDVCGPGRRRPGDESDDDIFGLNRRGAAGLGGSDYIVRPEGHVR----DHHRIAGLLPGRAGRVCVC 488
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9501.31076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFX6_ECTSI2.620e-4792.13EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT55_9PHAE1.190e-3362.30HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9501contigEcto-sp8_S_contig9501:3849..7205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score182.6
Seed ortholog evalue5.1e-43
Seed eggNOG ortholog2880.D8LFX6
Model size2603
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs29ZCP@1,2RXW0@2759
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-05_005130.1
Cds size1641
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145309.6240988-UTR-Ecto-sp8_S_contig9501:3848..47981681145309.6240988-UTR-Ecto-sp8_S_contig9501:3848..4798Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9501 3849..4798 -
1681145309.641994-UTR-Ecto-sp8_S_contig9501:5552..55641681145309.641994-UTR-Ecto-sp8_S_contig9501:5552..5564Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9501 5553..5564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145309.6683064-CDS-Ecto-sp8_S_contig9501:5564..72051681145309.6683064-CDS-Ecto-sp8_S_contig9501:5564..7205Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9501 5565..7205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9501.31076.1prot_Ecto-sp8_S_contig9501.31076.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9501 5565..7205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9501.31076.1

>prot_Ecto-sp8_S_contig9501.31076.1 ID=prot_Ecto-sp8_S_contig9501.31076.1|Name=mRNA_Ecto-sp8_S_contig9501.31076.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=547bp
MPSKCASPGCPTNPSFGLNDGKRKVLFCRGHAKEGMINVRDRTCCHPGGC
PTRPSYAEAGSKKPEFCVLHAPKGTVDVLSRRCARKDCLVSPSFGVKGSK
KVEFCQEHAKEGMVNVRIKQCEQQGCTTMPTYGKDGSKRPQYCHRHATGE
MINLHSKRCSHPGCTKQPSYGVDGTNKAELCAEHGKPGMVNVRMKRCSYR
SCTRQPSYSMDGSRTPEFCSRHATDGMIDVRSKKCRHAGCVKVASYGEAH
TGSREFCGAHATEGMVALAVRQRRSENGHARGPRRGSAASSASAAAVAAA
AAVAVTADVSADVTAATAAADSDGGKRKGRALPLSAAEESSGDGIIEAMN
KRTRQVLGTVAAPPVPASPVPPAGVPQDPEREGAAAAATAAAAPSQTLAA
NGEIGSLGDEAPAASEATALAPTPTPEEPATAIAEAAAPEPAAAAPEPAA
AAPEPAAAAPEPAAVAPEPAAPEPRVQGGDGGAGDAAAFEAAPDSDGTES
DIDVCGPGRRRPGDESDDDIFGLNRRGAAGLGGSDYIVQPEGHVRV*
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mRNA from alignment at Ecto-sp8_S_contig9501:3849..7205-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9501.31076.1 ID=mRNA_Ecto-sp8_S_contig9501.31076.1|Name=mRNA_Ecto-sp8_S_contig9501.31076.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3357bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9501:3849..7205- (Ectocarpus species8 EcLAC_412)
ATGCCGTCTAAGTGCGCCTCTCCGGGCTGCCCCACGAATCCATCATTTGG
CCTGAACGATGGCAAGAGGAAGGTGCTGTTCTGCCGTGGACATGCCAAGG
AAGGCATGATCAACGTCCGAGACCGGACGTGCTGCCACCCAGGAGGTTGT
CCCACGAGGCCGTCTTACGCGGAGGCCGGGTCGAAAAAGCCGGAGTTCTG
TGTCCTTCACGCTCCGAAGGGGACGGTGGACGTTCTCAGCAGGAGGTGCG
CTCGGAAGGACTGCTTGGTCAGCCCGTCGTTCGGAGTCAAGGGCTCGAAA
AAGGTCGAGTTCTGCCAGGAGCATGCGAAGGAGGGCATGGTCAACGTCCG
CATCAAGCAGTGCGAGCAGCAAGGGTGCACCACGATGCCAACGTACGGCA
AGGACGGCAGCAAGAGACCGCAGTACTGCCACCGGCACGCCACGGGGGAG
ATGATCAACCTACACAGCAAGAGATGCAGCCACCCAGGTTGTACCAAGCA
GCCGTCGTACGGGGTCGACGGCACCAACAAGGCGGAGCTGTGCGCGGAGC
ATGGCAAGCCTGGGATGGTGAACGTCCGCATGAAGCGATGCTCGTACCGC
TCCTGCACCAGACAGCCTTCGTACAGCATGGACGGCAGCAGGACGCCCGA
GTTTTGTAGCCGGCATGCTACGGACGGGATGATAGACGTCCGCAGCAAGA
AGTGCCGCCACGCGGGCTGCGTGAAGGTGGCCTCCTACGGCGAGGCCCAC
ACCGGCTCCAGAGAGTTCTGCGGGGCCCACGCGACAGAGGGCATGGTGGC
TCTGGCTGTGAGACAGCGCCGCAGTGAGAACGGGCATGCTCGCGGGCCGA
GACGTGGCTCTGCTGCTTCTTCTGCTTCTGCTGCTGCTGTTGCCGCTGCT
GCTGCTGTTGCCGTTACTGCTGATGTTTCTGCTGATGTTACTGCTGCAAC
CGCTGCCGCGGATTCGGATGGCGGGAAGCGGAAGGGGCGTGCTTTGCCGC
TGTCCGCAGCTGAGGAGTCCTCTGGCGACGGTATCATCGAAGCGATGAAC
AAACGAACTCGCCAGGTCCTAGGCACCGTCGCGGCCCCGCCGGTACCTGC
CTCGCCCGTGCCACCTGCAGGGGTACCCCAAGACCCCGAGCGAGAAGGGG
CAGCGGCCGCCGCCACCGCCGCCGCCGCCCCTTCGCAAACTTTGGCCGCG
AATGGCGAGATTGGTAGCCTTGGGGACGAAGCCCCAGCAGCATCAGAAGC
CACAGCCCTGGCACCAACGCCAACACCAGAAGAACCGGCAACGGCAATCG
CAGAGGCAGCAGCACCAGAACCAGCGGCAGCAGCACCAGAACCAGCGGCA
GCAGCACCAGAACCAGCGGCAGCAGCACCAGAACCAGCGGCAGTAGCACC
AGAACCAGCGGCACCGGAACCAAGAGTCCAGGGCGGCGACGGCGGTGCTG
GTGACGCCGCCGCATTTGAAGCGGCGCCCGATTCAGACGGCACGGAGAGC
GACATCGATGTCTGCGGGCCCGGACGTCGAAGGCCGGGCGACGAGAGCGA
CGACGACATTTTCGGTCTCAATCGACGAGGGGCAGCAGGCCTGGGCGGGA
GCGACTACATTGTCCAACCCGAAGGGCACGTGAGGGTTTGAGTTCAAGAT
TATGTGAGTGTATCGACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCCTCAGAATGTAGAGCAGTTGTTGCGCTGCCAGGCCAATGCACGGTGC
TGAAGTAAAGGTGTACGTTTGATGCAAGGGTCCGTCGTGTCTTGCTTTCA
GCTGTGTCAGCCGCCGTGGTCATGTTTCCGTGACGAAGGGTACACAGGGC
GGGGTGAGTCTTGTGCTTCTGGTTGATTTGTGTCTTGTAGAGTACATTGA
GTCCCTAGACGCTGCAGTAGGCTCCCTACCATCGCACCAGTACCGTTGTT
TTTTTCGTAGAAACACAACATATTCATCTCTTCCACAGATAAGAGCCCGG
AATAGGTTGATCGATCAATTCAATTATACAATAAAAACAACACATTCATC
TCTTCCACAGATAAAATAGGTTGATCGATCAATTAAACCATACGATAAGA
AGCAACACATTCGCATCTCTTCCACATATAAGAGTTGTCCGCAATAGGTT
GAGCGATCAAATCACATCTAACAGTAGCTTTGTTTTCGTCTCCCCTATCC
GTGGGTGCCTGCTATTTTCATCGACAACGTAACTTGAAACGATTACCCTT
TTGGTATTTCATCCCCCACGGTTTCTCTGCGGTGCGTGCTGCTGCCGCTG
CCTCTGCTGTTGCTCGCGTTGTTCCAAAACCGCTGCCGCCTTGCTTTGTG
ATCTCACCGTCTGCCTCCCCTCTATCTTTTCGCCATGTGCCGACCACCGA
ATTGCAGCCCTATTGCCTGGGAGGGCGGGGCTTGTGTGTGTGCAAGACGC
GTGCGTACTGTAGCGGGGAGCAGCCAATATCCGCTTTTTGGGGGAGGGGG
AGAAGTCATCAGACGCGCATTTTTTAAAGGACGGGCAAGTCTCATGGCTG
TGACCCTAGAGGCGAAGAAGCATCGAGTTTTCCCTCTTGAGCTCGCGAGG
GTGTGCGAAAATCGACCCTGTGTGTCCCTCGAGTATTATGGTTGTTCGTG
ATGGCGTTGCCGCCGGTGTCTCCGGTTGCCTTTTTCCTTTCGTCGTCGCC
TTGAAGGCAGCTGTCGTGTCTACAGCAGCACGGGTGCTCACCAGGCAGCT
GTGGTTGCCATAGCAGTGTTTGTATTTTTGTTTATACGGTGGGAAGGCGG
GGCAATGCTGCCCTAAAAGAGGCCCCAGCCAGGGTTGTACAGCAGCGGAA
GTAGCCACGACGAGAGCACAGCCTCGGCGATAACAAACGGCGCGCTGTCG
CGCCGCATGAAGTATCAGTGTTTGGTCAAGCCGCGACGCATGGTTGCCTG
CCTCTTGTATGTAGTTGTTCCTTAGATGGTGGGGTTTCCCAAATATTTCA
GGGGGAATCATCGCTCGGGCATCATGTTCGCATGAGGCCGGCAGTTTGTG
TTTTGTGAGTGCTAGATTGTTGGTGCTGTTGCTGTTTGTCTTGGCATGAG
CAAGAACGGTTCCTACCTCTGCTCAGAATCTTCTGGCATCCGTGCTGGGT
GCAACGTTTGACGCGGACACCTTCCGTGATCACAAGCTATTCAGTAGTTT
CACTGCCGTACATCATAAATCATCGAAGGGAAAAGATCCTGTTCCCAGCA
CAATCTACACAAGCTCCGTGAGAGAACGTGGGAGTTCGCAACAAGCTGTG
CTCTTTTTGGCTTGTGGGGTTTCAAAAACCAATTGAAAGTTCGAAGGATG
TCGCCCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9501:3849..7205-

>mRNA_Ecto-sp8_S_contig9501.31076.1 ID=mRNA_Ecto-sp8_S_contig9501.31076.1|Name=mRNA_Ecto-sp8_S_contig9501.31076.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1641bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9501:3849..7205- (Ectocarpus species8 EcLAC_412)
ATGCCGTCTAAGTGCGCCTCTCCGGGCTGCCCCACGAATCCATCATTTGG
CCTGAACGATGGCAAGAGGAAGGTGCTGTTCTGCCGTGGACATGCCAAGG
AAGGCATGATCAACGTCCGAGACCGGACGTGCTGCCACCCAGGAGGTTGT
CCCACGAGGCCGTCTTACGCGGAGGCCGGGTCGAAAAAGCCGGAGTTCTG
TGTCCTTCACGCTCCGAAGGGGACGGTGGACGTTCTCAGCAGGAGGTGCG
CTCGGAAGGACTGCTTGGTCAGCCCGTCGTTCGGAGTCAAGGGCTCGAAA
AAGGTCGAGTTCTGCCAGGAGCATGCGAAGGAGGGCATGGTCAACGTCCG
CATCAAGCAGTGCGAGCAGCAAGGGTGCACCACGATGCCAACGTACGGCA
AGGACGGCAGCAAGAGACCGCAGTACTGCCACCGGCACGCCACGGGGGAG
ATGATCAACCTACACAGCAAGAGATGCAGCCACCCAGGTTGTACCAAGCA
GCCGTCGTACGGGGTCGACGGCACCAACAAGGCGGAGCTGTGCGCGGAGC
ATGGCAAGCCTGGGATGGTGAACGTCCGCATGAAGCGATGCTCGTACCGC
TCCTGCACCAGACAGCCTTCGTACAGCATGGACGGCAGCAGGACGCCCGA
GTTTTGTAGCCGGCATGCTACGGACGGGATGATAGACGTCCGCAGCAAGA
AGTGCCGCCACGCGGGCTGCGTGAAGGTGGCCTCCTACGGCGAGGCCCAC
ACCGGCTCCAGAGAGTTCTGCGGGGCCCACGCGACAGAGGGCATGGTGGC
TCTGGCTGTGAGACAGCGCCGCAGTGAGAACGGGCATGCTCGCGGGCCGA
GACGTGGCTCTGCTGCTTCTTCTGCTTCTGCTGCTGCTGTTGCCGCTGCT
GCTGCTGTTGCCGTTACTGCTGATGTTTCTGCTGATGTTACTGCTGCAAC
CGCTGCCGCGGATTCGGATGGCGGGAAGCGGAAGGGGCGTGCTTTGCCGC
TGTCCGCAGCTGAGGAGTCCTCTGGCGACGGTATCATCGAAGCGATGAAC
AAACGAACTCGCCAGGTCCTAGGCACCGTCGCGGCCCCGCCGGTACCTGC
CTCGCCCGTGCCACCTGCAGGGGTACCCCAAGACCCCGAGCGAGAAGGGG
CAGCGGCCGCCGCCACCGCCGCCGCCGCCCCTTCGCAAACTTTGGCCGCG
AATGGCGAGATTGGTAGCCTTGGGGACGAAGCCCCAGCAGCATCAGAAGC
CACAGCCCTGGCACCAACGCCAACACCAGAAGAACCGGCAACGGCAATCG
CAGAGGCAGCAGCACCAGAACCAGCGGCAGCAGCACCAGAACCAGCGGCA
GCAGCACCAGAACCAGCGGCAGCAGCACCAGAACCAGCGGCAGTAGCACC
AGAACCAGCGGCACCGGAACCAAGAGTCCAGGGCGGCGACGGCGGTGCTG
GTGACGCCGCCGCATTTGAAGCGGCGCCCGATTCAGACGGCACGGAGAGC
GACATCGATGTCTGCGGGCCCGGACGTCGAAGGCCGGGCGACGAGAGCGA
CGACGACATTTTCGGTCTCAATCGACGAGGGGCAGCAGGCCTGGGCGGGA
GCGACTACATTGTCCAACCCGAAGGGCACGTGAGGGTTTGA
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