mRNA_Ecto-sp8_S_contig94929.31056.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig94929.31056.1
Unique NamemRNA_Ecto-sp8_S_contig94929.31056.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig94929.31056.1 vs. uniprot
Match: D7G5I7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I7_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.050e-38
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:    1 FLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPR 189
            FLDEEDADSALKGLMGRWYA RPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPR
Sbjct:  175 FLDEEDADSALKGLMGRWYASRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPR 237
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BLAST of mRNA_Ecto-sp8_S_contig94929.31056.1 vs. uniprot
Match: A0A7S3XMX4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMX4_HETAK)

HSP 1 Score: 121 bits (304), Expect = 5.450e-33
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 FLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPR 189
            + DEEDADSALK L GR+YAGRP++CEFSPVTDFREARCRQFDEGTC RGG CNFMHVK VPR
Sbjct:  138 YADEEDADSALKALYGRFYAGRPLICEFSPVTDFREARCRQFDEGTCARGGYCNFMHVKAVPR 200
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BLAST of mRNA_Ecto-sp8_S_contig94929.31056.1 vs. uniprot
Match: A0A7S2V6D5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6D5_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.380e-31
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 FLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPR 189
            F DEEDAD ALK L GR+YAGRP++CEFSPVTDFREARCRQ+DEGTC RGG CNFMHVK +PR
Sbjct:   47 FTDEEDADKALKALYGRFYAGRPLVCEFSPVTDFREARCRQYDEGTCQRGGYCNFMHVKRMPR 109
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BLAST of mRNA_Ecto-sp8_S_contig94929.31056.1 vs. uniprot
Match: A0A835ZC00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC00_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.510e-31
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 FLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPR 189
            F DEEDAD+ALKGL GRWYAGRP++ EFSPVTDFREARCRQ+DEGTC RGGQCNFMHV+ V R
Sbjct:  177 FSDEEDADNALKGLFGRWYAGRPMVPEFSPVTDFREARCRQYDEGTCGRGGQCNFMHVRHVSR 239
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BLAST of mRNA_Ecto-sp8_S_contig94929.31056.1 vs. uniprot
Match: A0A835YWK2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWK2_9STRA)

HSP 1 Score: 115 bits (288), Expect = 8.070e-31
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 FLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPR 189
            F DEEDAD+ALKGL GRWY GRP++ EFSPV DFREARCRQ+DEGTC RGGQCNFMHV+ V +
Sbjct:  136 FSDEEDADAALKGLFGRWYGGRPMVPEFSPVNDFREARCRQYDEGTCGRGGQCNFMHVRHVSK 198
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BLAST of mRNA_Ecto-sp8_S_contig94929.31056.1 vs. uniprot
Match: H3G5Y3_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3G5Y3_PHYRM)

HSP 1 Score: 115 bits (287), Expect = 9.310e-31
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 FLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPR 189
            F DEE A +A K L GR+YAGRP++CEFSPVTDFREARCRQFDEGTCNRGG CNFMH+K VPR
Sbjct:  115 FDDEEHAAAAQKALYGRFYAGRPLVCEFSPVTDFREARCRQFDEGTCNRGGYCNFMHIKTVPR 177
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BLAST of mRNA_Ecto-sp8_S_contig94929.31056.1 vs. uniprot
Match: A0A484E7J8_BRELC (C3H1-type domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7J8_BRELC)

HSP 1 Score: 114 bits (285), Expect = 3.560e-30
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 FLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPR 189
            + DEE A +A K L GR+YAGRP++CEFSPVTDFREARCRQFDEGTCNRGG CNFMH+K VPR
Sbjct:   66 YEDEEHAAAAQKALYGRFYAGRPLVCEFSPVTDFREARCRQFDEGTCNRGGYCNFMHIKTVPR 128
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BLAST of mRNA_Ecto-sp8_S_contig94929.31056.1 vs. uniprot
Match: K3WKD1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKD1_GLOUD)

HSP 1 Score: 114 bits (286), Expect = 2.120e-29
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 FLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPR 189
            F DEE A +A K L GR+YAGRP++CEFSPVTDFREARCRQFDEGTCNRGG CNFMH+K VPR
Sbjct:  172 FEDEECAAAAQKSLYGRFYAGRPLVCEFSPVTDFREARCRQFDEGTCNRGGYCNFMHIKTVPR 234
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BLAST of mRNA_Ecto-sp8_S_contig94929.31056.1 vs. uniprot
Match: A0A6A3M9C2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3M9C2_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.300e-29
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 FLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPR 189
            + DEE A +A K L GR+YAGRP++CEFSPVTDFREARCRQFDEGTCNRGG CNFMH+K VPR
Sbjct:  170 YEDEEHAAAAQKALYGRFYAGRPLVCEFSPVTDFREARCRQFDEGTCNRGGYCNFMHIKTVPR 232
[Close]
BLAST of mRNA_Ecto-sp8_S_contig94929.31056.1 vs. uniprot
Match: A0A662X699_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X699_9STRA)

HSP 1 Score: 114 bits (284), Expect = 7.570e-29
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 FLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPR 189
            F DEE A +A K L GR+Y GRP++CEFSPVTDFREARCRQFDEGTCNRGG CNFMH+K VPR
Sbjct:  202 FEDEEHAAAAQKALYGRFYGGRPLVCEFSPVTDFREARCRQFDEGTCNRGGYCNFMHIKTVPR 264
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94929.31056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5I7_ECTSI1.050e-3898.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XMX4_HETAK5.450e-3384.13Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V6D5_9STRA1.380e-3180.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZC00_9STRA1.510e-3182.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YWK2_9STRA8.070e-3177.78Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
H3G5Y3_PHYRM9.310e-3179.37Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A484E7J8_BRELC3.560e-3077.78C3H1-type domain-containing protein n=1 Tax=Bremia... [more]
K3WKD1_GLOUD2.120e-2979.37Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6A3M9C2_9STRA3.300e-2977.78Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A662X699_9STRA7.570e-2977.78Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94929contigEcto-sp8_S_contig94929:7..453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score141.7
Seed ortholog evalue1.1e-31
Seed eggNOG ortholog2880.D7G5I7
Preferred nameU2AF1
Model size189
KEGG koko:K12836
KEGG Pathwayko03040,ko05131,map03040,map05131
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000243,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008187,GO:0008380,GO:0009314,GO:0009416,GO:0009628,GO:0009648,GO:0009791,GO:0009889,GO:0009987,GO:0010228,GO:0010467,GO:0010468,GO:0010556,GO:0010810,GO:0010811,GO:0015030,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0019904,GO:0022414,GO:0030155,GO:0030628,GO:0031123,GO:0031124,GO:0031323,GO:0031326,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0036002,GO:0042710,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043900,GO:0043902,GO:0044010,GO:0044011,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044764,GO:0045184,GO:0045292,GO:0045785,GO:0046483,GO:0046907,GO:0048024,GO:0048518,GO:0048522,GO:0048573,GO:0048608,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050684,GO:0050733,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0070727,GO:0071004,GO:0071010,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0089701,GO:0090304,GO:0090605,GO:0090609,GO:0097159,GO:1900187,GO:1900189,GO:1900190,GO:1900192,GO:1901360,GO:1901363,GO:1902494,GO:1903311,GO:1903506,GO:1990904,GO:2000112,GO:2001141
Exons2
EggNOG free text desc.pre-mRNA 3'-splice site binding
EggNOG OGsKOG2202@1,KOG2202@2759
Cds size189
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145307.9497957-CDS-Ecto-sp8_S_contig94929:6..1521681145307.9497957-CDS-Ecto-sp8_S_contig94929:6..152Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94929 7..152 +
1681145307.9726427-CDS-Ecto-sp8_S_contig94929:410..4531681145307.9726427-CDS-Ecto-sp8_S_contig94929:410..453Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94929 411..453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94929.31056.1prot_Ecto-sp8_S_contig94929.31056.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig94929 7..453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig94929.31056.1

>prot_Ecto-sp8_S_contig94929.31056.1 ID=prot_Ecto-sp8_S_contig94929.31056.1|Name=mRNA_Ecto-sp8_S_contig94929.31056.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=63bp
FLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRG
GQCNFMHVKPVPR
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mRNA from alignment at Ecto-sp8_S_contig94929:7..453+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig94929.31056.1 ID=mRNA_Ecto-sp8_S_contig94929.31056.1|Name=mRNA_Ecto-sp8_S_contig94929.31056.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=447bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94929:7..453+ (Ectocarpus species8 EcLAC_412)
TTCCTTGACGAAGAAGACGCTGATTCTGCTCTCAAGGGCCTCATGGGAAG
GTGGTACGCCGGTCGGCCCATCATGTGCGAGTTCAGCCCGGTGACAGACT
TCCGGGAGGCACGCTGCCGGCAGTTCGACGAGGGCACGTGCAACAGGTGA
AGCGAGAGAGAGAGGAGGGGGGGGGGCGTACTCATGCGAACGCGTGCTGT
TGTCGTTGGATCGTTGACCACGCGTCCTCGAGAGCGGATAGACCATTGAC
GGGGTGGGGGAGTCTTCTGCTGTGGCTTGTTTGGGAGGCACCAAGCCGTC
GTAAATTTGCTTGTATGCACGCACACTCATGAGCAACCCCTCCCCACCCC
CCCCGCCCGCCCGTTTCGATGTGTTCGGCCGTGTCTGTATTGGTTATTTC
TCAGGGGAGGGCAGTGTAACTTCATGCACGTGAAGCCGGTCCCCCGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig94929:7..453+

>mRNA_Ecto-sp8_S_contig94929.31056.1 ID=mRNA_Ecto-sp8_S_contig94929.31056.1|Name=mRNA_Ecto-sp8_S_contig94929.31056.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94929:7..453+ (Ectocarpus species8 EcLAC_412)
TTCCTTGACGAAGAAGACGCTGATTCTGCTCTCAAGGGCCTCATGGGAAG
GTGGTACGCCGGTCGGCCCATCATGTGCGAGTTCAGCCCGGTGACAGACT
TCCGGGAGGCACGCTGCCGGCAGTTCGACGAGGGCACGTGCAACAGGGGA
GGGCAGTGTAACTTCATGCACGTGAAGCCGGTCCCCCGC
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