mRNA_Ecto-sp8_S_contig9461.31000.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9461.31000.1
Unique NamemRNA_Ecto-sp8_S_contig9461.31000.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9461.31000.1 vs. uniprot
Match: D7FW21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW21_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 7.100e-19
Identity = 58/67 (86.57%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 GGRVAANGGKARVARVVAKTLETTKEAPTTPSSVPGPLPSGAAAVA--PKRRRGRPRKTAVAPTQTE 195
            GGRVAAN GKARVARVVAKTLETTKEAPT PSSVPG LP+ AAA    PKRRRGRPRKTAVAPTQTE
Sbjct:  882 GGRVAANDGKARVARVVAKTLETTKEAPT-PSSVPGSLPAAAAAAPTPPKRRRGRPRKTAVAPTQTE 947
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BLAST of mRNA_Ecto-sp8_S_contig9461.31000.1 vs. uniprot
Match: A0A6H5JCZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCZ4_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.730e-14
Identity = 52/68 (76.47%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 GGRVAANGGKARVARVVAKTLETTKEAPTTPSSVPGPLPSGAAAVAP---KRRRGRPRKTAVAPTQTE 195
            GGRVAANGGKARVARV AKT ETTKEA T+ SSVPG LP    A AP   KRRRGRPRKT V PTQTE
Sbjct:  595 GGRVAANGGKARVARVEAKTKETTKEALTS-SSVPGSLPPAGVAAAPTPPKRRRGRPRKTTVVPTQTE 661
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9461.31000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW21_ECTSI7.100e-1986.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCZ4_9PHAE2.730e-1476.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9461contigEcto-sp8_S_contig9461:41..750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score97.1
Seed ortholog evalue3.4e-18
Seed eggNOG ortholog2880.D7FW21
Model size711
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2CY8W@1,2S2UA@2759
Cds size198
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145304.3099897-CDS-Ecto-sp8_S_contig9461:40..2381681145304.3099897-CDS-Ecto-sp8_S_contig9461:40..238Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9461 41..238 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145304.3285675-UTR-Ecto-sp8_S_contig9461:238..7501681145304.3285675-UTR-Ecto-sp8_S_contig9461:238..750Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9461 239..750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9461.31000.1prot_Ecto-sp8_S_contig9461.31000.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9461 41..238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9461.31000.1

>prot_Ecto-sp8_S_contig9461.31000.1 ID=prot_Ecto-sp8_S_contig9461.31000.1|Name=mRNA_Ecto-sp8_S_contig9461.31000.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=66bp
GGRVAANGGKARVARVVAKTLETTKEAPTTPSSVPGPLPSGAAAVAPKRR
RGRPRKTAVAPTQTE*
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mRNA from alignment at Ecto-sp8_S_contig9461:41..750+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9461.31000.1 ID=mRNA_Ecto-sp8_S_contig9461.31000.1|Name=mRNA_Ecto-sp8_S_contig9461.31000.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=710bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9461:41..750+ (Ectocarpus species8 EcLAC_412)
GGTGGCCGCGTCGCGGCGAATGGCGGCAAGGCGCGGGTCGCAAGGGTCGT
AGCGAAAACATTGGAGACGACGAAAGAAGCACCAACAACACCATCATCAG
TCCCAGGCCCACTACCGTCGGGGGCGGCGGCGGTGGCGCCGAAGCGAAGG
CGGGGACGCCCAAGGAAAACGGCCGTTGCTCCGACGCAGACGGAATGAAA
AACCACGGGCGGAGTTTTGTTGTGCTGCTGCTACAGGACAGCCAACACCG
CTGTTGTTGTGTTACTACCTACGATAGATAGCCGTGAAGGTTCTTTCTTA
GGAGTTGGTTGTTGACGATTGGTTGGTGTGAACGTGCAGGGTGTAATTAA
TTGCAGTCCAAGAGGGTGTAAAGAAGCGCTTGCTACAGCAGTATCATGTA
AGCAAGCGGCGCCGTTTTCTGAACTGCCGGTGTTGAGCTTATTGGCGCCC
ATCAGGATATACCTCCGTGCGAGAGTGGTGTCAAGTTTTCTCCAGGATTT
GAGCGCTTTTTTCGTGTTGTATCCGCCGCTAGCCGCAGAAATCGCCTGTC
TGTTTCCTTCAGATACTTACTGCCGCCGTGTTAGTGACACAGAGGGGGGT
GGTGTGCTCGTTGTCGTACATGCCGTAGTCGTTTGACCATTGACCTCGCA
TTAATCAAGCGCCTTGTTTCGGACAGGAAAAGGGAATAACAGCCGATTGA
GTGTGTGGAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9461:41..750+

>mRNA_Ecto-sp8_S_contig9461.31000.1 ID=mRNA_Ecto-sp8_S_contig9461.31000.1|Name=mRNA_Ecto-sp8_S_contig9461.31000.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9461:41..750+ (Ectocarpus species8 EcLAC_412)
GGTGGCCGCGTCGCGGCGAATGGCGGCAAGGCGCGGGTCGCAAGGGTCGT
AGCGAAAACATTGGAGACGACGAAAGAAGCACCAACAACACCATCATCAG
TCCCAGGCCCACTACCGTCGGGGGCGGCGGCGGTGGCGCCGAAGCGAAGG
CGGGGACGCCCAAGGAAAACGGCCGTTGCTCCGACGCAGACGGAATGA
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