mRNA_Ecto-sp8_S_contig9452.30981.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9452.30981.1
Unique NamemRNA_Ecto-sp8_S_contig9452.30981.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9452.30981.1 vs. uniprot
Match: A0A6H5KRS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS6_9PHAE)

HSP 1 Score: 805 bits (2080), Expect = 2.020e-288
Identity = 439/497 (88.33%), Postives = 451/497 (90.74%), Query Frame = 1 
Query:  259 MAPTQHLSSFNSSFSSFLDEASCGTRRKSLPLLIREHRPAEIRFKNMVRGREFSEALRSLELNIDQVRESLCVLDFGLTAGGPRPYQDPRSHHWCMLRLRRLLGPAPLAAVGGAGGXSEDEEEGAVNTELAQLTVELIGAANAAMLVPHLIHGLTGEEQGAGETPSAEEVRPAAATLGAQVGGLKAYWPCLRELTLSCGIMRGDLEDLAGCLGSLPALEVLVLAGHSYRAPQTTLVAFARALHEPAASPAAPIRPRRLRMLSLKHFTVEGVEGVAALGEALSAERFPRLAALSINSCRLGDKQLCALAATLPGMSRTLKTLSFRSNYALSSVGVSALAEALRAPATATNAGSATTATPTKPGFAPTAGCPLSCSASAGATTTGAGAPTAKKPLPERAPAWWVPSXXXXXXXXXXXXXXPXXXXXXXXXX-AAPARLTIESLDLSYSCWWNRPERAARTGSESSAGGGGGPFAGLLKILGEGVACPSLRSLRLEGCYL 1746
            MAPTQHLSSFNSSFSSFLDEASC TR  SLPLL+REHRPAEIRFKNMVRG EFS+ALRSLELNIDQVR+SLCVLDFGLTAGGPRPYQDPRSHHWCMLRLRRLLGP PLA VG AGG SEDEEEGAV+TELAQLTVEL+G ANAA LVP LIHGLTGEE+GAGETPSAEEVRPAAA LGA+V GLKAYWPCLRELTLSCGIMRGDLEDL+ CLGSLPALEVLVLAGHSYRAPQTTLVAFARALHE AASPAAPIRPRRLR LSLKHFTVEGVEGVA LGE LSAERFPRLA+LSI+SCRLGDKQLCALAA LPGMSRTLKTLSFRSNYALSSVGVSALAEALRAPATAT+ GSAT ATPTKPGF PT GC L  SASAGATTTGAGAPTA+KPLPERAPAW VPS  XXXXXXXXX   P           AAPA LTIESLDLSYSCWWNRPERAARTGSESSA GG GPFAGLLKILGEGVACPSLRSLRLEGCYL
Sbjct:    1 MAPTQHLSSFNSSFSSFLDEASCITRHNSLPLLVREHRPAEIRFKNMVRGGEFSDALRSLELNIDQVRKSLCVLDFGLTAGGPRPYQDPRSHHWCMLRLRRLLGPGPLAEVGDAGGGSEDEEEGAVDTELAQLTVELMGPANAATLVPQLIHGLTGEEEGAGETPSAEEVRPAAAKLGAKVRGLKAYWPCLRELTLSCGIMRGDLEDLSACLGSLPALEVLVLAGHSYRAPQTTLVAFARALHESAASPAAPIRPRRLRTLSLKHFTVEGVEGVATLGEVLSAERFPRLASLSIDSCRLGDKQLCALAAMLPGMSRTLKTLSFRSNYALSSVGVSALAEALRAPATATDGGSATAATPTKPGFFPTTGCLLGRSASAGATTTGAGAPTAEKPLPERAPAWSVPSSSXXXXXXXXXTNCPRPTAAAAEAASAAPAHLTIESLDLSYSCWWNRPERAARTGSESSAKGGSGPFAGLLKILGEGVACPSLRSLRLEGCYL 497
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BLAST of mRNA_Ecto-sp8_S_contig9452.30981.1 vs. uniprot
Match: D8LI43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI43_ECTSI)

HSP 1 Score: 563 bits (1452), Expect = 9.820e-198
Identity = 289/299 (96.66%), Postives = 290/299 (96.99%), Query Frame = 1 
Query:    1 MRSLSPNVVEHILQWLDLASHLRLREASTFDRDETPRRTTTLAARGSEQARRCQLVIFTPDKKTRLHSITLDVTAPSSGSSSSSCGMAPTQHLSSFNSSFSSFLDEASCGTRRKSLPLLIREHRPAEIRFKNMVRGREFSEALRSLELNIDQVRESLCVLDFGLTAGGPRPYQDPRSHHWCMLRLRRLLGPAPLAAVGGAGGXSEDEEEGAVNTELAQLTVELIGAANAAMLVPHLIHGLTGEEQGAGETPSAEEVRPAAATLGAQVGGLKAYWPCLRELTLSCGIMRGDLEDLAGCLG 897
            MRSLSPNVVEHILQWLDLASHLRLREASTFDRDETPRRTTTLAARGSEQARRCQLVIFTPDKKTRLHSITLDVTAPSSGSSSS CGM PTQHLSSFNSSFSSFLDEASC  RR SLPLLIREHRPAEIRFKNMVRGREFSEALRSLELNIDQVRESLCVLDFGLTAGGPRPYQDPRSHHWCMLRLRRLLGPAPLAAVGGAGG SEDE EGAVNTELAQLTVELIGAANAAMLVPHLIHGLTGEEQGAG+TPSAEE RPAAATLGAQVGGLKAYWPCLREL LSCGIMRGDLEDLAGCLG
Sbjct:    1 MRSLSPNVVEHILQWLDLASHLRLREASTFDRDETPRRTTTLAARGSEQARRCQLVIFTPDKKTRLHSITLDVTAPSSGSSSSKCGMEPTQHLSSFNSSFSSFLDEASCAKRRNSLPLLIREHRPAEIRFKNMVRGREFSEALRSLELNIDQVRESLCVLDFGLTAGGPRPYQDPRSHHWCMLRLRRLLGPAPLAAVGGAGGGSEDEGEGAVNTELAQLTVELIGAANAAMLVPHLIHGLTGEEQGAGDTPSAEEFRPAAATLGAQVGGLKAYWPCLRELMLSCGIMRGDLEDLAGCLG 299
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9452.30981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRS6_9PHAE2.020e-28888.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI43_ECTSI9.820e-19896.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9452contigEcto-sp8_S_contig9452:2413..5973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1748
Hectar predicted targeting categoryother localisation
Exons4
Cds size1746
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145303.0075996-CDS-Ecto-sp8_S_contig9452:2412..32591681145303.0075996-CDS-Ecto-sp8_S_contig9452:2412..3259Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9452 2413..3259 -
1681145303.0239217-CDS-Ecto-sp8_S_contig9452:3567..40801681145303.0239217-CDS-Ecto-sp8_S_contig9452:3567..4080Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9452 3568..4080 -
1681145303.0367844-CDS-Ecto-sp8_S_contig9452:4300..46561681145303.0367844-CDS-Ecto-sp8_S_contig9452:4300..4656Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9452 4301..4656 -
1681145303.048789-CDS-Ecto-sp8_S_contig9452:5943..59731681145303.048789-CDS-Ecto-sp8_S_contig9452:5943..5973Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9452 5944..5973 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9452.30981.1prot_Ecto-sp8_S_contig9452.30981.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9452 2413..5973 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9452.30981.1

>prot_Ecto-sp8_S_contig9452.30981.1 ID=prot_Ecto-sp8_S_contig9452.30981.1|Name=mRNA_Ecto-sp8_S_contig9452.30981.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=582bp
MRSLSPNVVEHILQWLDLASHLRLREASTFDRDETPRRTTTLAARGSEQA
RRCQLVIFTPDKKTRLHSITLDVTAPSSGSSSSSCGMAPTQHLSSFNSSF
SSFLDEASCGTRRKSLPLLIREHRPAEIRFKNMVRGREFSEALRSLELNI
DQVRESLCVLDFGLTAGGPRPYQDPRSHHWCMLRLRRLLGPAPLAAVGGA
GGGSEDEEEGAVNTELAQLTVELIGAANAAMLVPHLIHGLTGEEQGAGET
PSAEEVRPAAATLGAQVGGLKAYWPCLRELTLSCGIMRGDLEDLAGCLGS
LPALEVLVLAGHSYRAPQTTLVAFARALHEPAASPAAPIRPRRLRMLSLK
HFTVEGVEGVAALGEALSAERFPRLAALSINSCRLGDKQLCALAATLPGM
SRTLKTLSFRSNYALSSVGVSALAEALRAPATATNAGSATTATPTKPGFA
PTAGCPLSCSASAGATTTGAGAPTAKKPLPERAPAWWVPSSSPPPPPPPS
ATNCPRPTAAAAAASAAPARLTIESLDLSYSCWWNRPERAARTGSESSAG
GGGGPFAGLLKILGEGVACPSLRSLRLEGCYL
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mRNA from alignment at Ecto-sp8_S_contig9452:2413..5973-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9452.30981.1 ID=mRNA_Ecto-sp8_S_contig9452.30981.1|Name=mRNA_Ecto-sp8_S_contig9452.30981.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3561bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9452:2413..5973- (Ectocarpus species8 EcLAC_412)
ATGCGGAGCCTCTCGCCCAATGTGGTTGAGGTAAGATGGAGTTGTGATCT
AAAAGCAAGTCAGTAGGCTACTTGCTGCTGTATTGTATGCTTACATATGA
TTCATACAGTCGACCCGTGGGTGCAGTCACGGGTCTTGAAGACACTCGGT
CCCTCCGACGCGGCGTAGCTACCGCATGTTTCAGGGGTGTACCCACGTGA
ATCGTGCCGGCTCTCAGGACACCGCCTTAGCTTGTGGACGCCTACTTCAG
TTTTGATGGAGAGGACAACCCACGGAATCATTATCATTTACGTCAGGTTC
GTTTGAATTTTGAACAGCAGCACCTGTTGGCTGACGACCGACCTCGCGTG
TGTTGGCGTGTTGGCATCTTACTGCGTGTTCTACCTTCCGGCCTGGCACG
GGGTGGGACCAGGGTGATTTCCTTCTGTACACTAGCTGTAGACAACAGTA
GTCAAGGTTAAACCAGGCGCCGGCGCTACGTGTGTTCTAGATGCATATCT
AGCTCTCTTCTCAGATGTACAGCGCCGAAAGGCGTGTTTGGGGCACCAAA
GATCATGAGGGGCATCGATGTGTTCGAAACTCCGCATGTTGAACGGCCTT
TTTGTTTTGAGTCTTCAAGACAGCGACAACTGAACCTCAGCCGATGGAAA
CCACTAGCCGGTCTTGTTCACGTTTTAGCGTTGTTTTGTCGCCCGATCTC
GATCTCTCGCTGCCTGTCTCTCTTTCTCGGGGATAAAACGGATTAGTCTA
TGTGGGAAAACTACTTCGAAAATTGAGGGACAAAGCCACCACAAGCGTGC
GGCGGAATATGGGACCCCCAGACTCTCTTGACGTCTGTCTCTCACACACA
AGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCGCTCGTCCCATTCTTTACAGCAGTGTCTTGGTACAGCAGTACT
GTACAAAACACAGAAACATCATCTTTCATCATTGGACAAAAGTCCAGGAT
CAAAGTGTTCGATGGGTCCACAGCCAGCCGTGTCTCTATGACCCACCTGC
ATTTCTACTGATCCTCGCGCAATGTATCTATATTTCCCCTGTGGGCCCAC
CGAGACAGGCTGGCGGCCATCTTCTGACTGATGGCGTCCCGCTTTCCAAC
AAGCTCGCCCAAAGACTTCAACCCATCCCCTTCGACTACTGCTGTGGTTA
TATCTCGAACGGGTTCATGTCTTTTTTTTTGTTTGATTGTACTTACGTGT
GTTTTAAAATAGCTCCCTTGCTCCCTCCTCAAAATCCTAATTCACCACTT
TTTTTCATGCCGAGCAGCACATCCTGCAGTGGCTGGACCTCGCCTCCCAC
CTGCGGCTGCGCGAGGCTAGCACCTTCGACCGCGACGAGACGCCGCGGCG
CACTACGACCCTGGCAGCACGGGGCAGCGAGCAGGCTAGGCGATGCCAGC
TGGTTATCTTTACCCCCGACAAGAAGACCCGCCTTCACAGCATCACGCTG
GACGTCACGGCGCCGAGCAGCGGCAGCAGCAGCAGCAGCTGCGGCATGGC
ACCGACGCAGCACCTGTCGTCCTTCAACTCTTCGTTCTCCTCTTTTCTGG
ACGAAGCTAGCTGCGGCACGCGGCGCAAATCGCTCCCCTTGCTGATCCGG
GAACATCGCCCTGCCGAGATCAGGTAGAATAAAAATACATCGTTTTTACT
ATCGGCATGCGTCTCTGTCTTGCTACCATCGGTCGTGTAGTCATTTCGTC
ACACCGATCAGTTCAGTTTCATGTCGGTCGGTCTCTCAACTTTTCTTGAG
CGGGGAGATACCGTATAACCTCCTTGCTATTATAGGTGAATTTTTTGCAC
CCGCTCCTATGCACACCACCCGCCACTCGGCCGCTCTCCTCAGGTTCAAG
AACATGGTCCGCGGACGCGAGTTCTCCGAGGCACTCCGGTCGCTCGAACT
AAACATCGACCAAGTCCGCGAGAGCCTTTGCGTCCTCGACTTCGGGCTCA
CCGCGGGAGGCCCCCGCCCTTACCAAGACCCCCGCTCCCACCACTGGTGC
ATGCTAAGGCTTCGGCGGCTGCTTGGGCCTGCCCCACTCGCCGCGGTCGG
CGGCGCTGGCGGGGGGAGCGAGGACGAGGAGGAGGGCGCGGTTAACACGG
AGCTGGCCCAGCTAACCGTAGAGCTCATCGGGGCCGCCAACGCCGCTATG
CTAGTGCCGCACTTGATTCACGGGCTCACGGGTGAGGAGCAGGGTGCCGG
GGAGACACCAAGCGCGGAGGAGGTTAGGCCGGCGGCGGCGACGCTTGGGG
CGCAAGTGGGAGGGTTGAAGGCCTACTGGCCGTGCTTGCGTGAGCTCACG
CTGTCGTGTGGAATCATGCGTGGGGACCTCGAAGACTTGGCAGGGTGCTT
AGGAAGGTGATGACGAAGTACAGAGAGACGGGGAAGGTTGCGATCGGCGG
CGGCGGCGGCGGCGGCGGCGACACAATAGTGGCACGGAGATGCGGTCATA
TTTGCGGAGAACAATAGCCTGGCGTATGTATGCCGTACACTCTGCCGGTG
AAGCGCCCCCACGCCAAGGGGGCATCCACCATCCACCCCCCCACCCTCTC
ACGGGGTGACGCCAGCGTGATACTTGCTTGCTTGCTCTTGTACGTCCCTC
TCGCGAACCTTCTCTGCACACTCAACCCCGCCTTGTACCCCCCCACTCCG
TGCGTGCTCCGCAGCTTGCCAGCGCTTGAGGTGCTAGTACTGGCGGGTCA
CTCCTACCGTGCACCGCAGACGACCCTCGTTGCCTTCGCGCGTGCCTTGC
ACGAGCCCGCCGCCTCGCCGGCAGCACCGATCAGGCCCCGGCGACTGAGG
ATGCTGTCGCTGAAGCACTTCACGGTCGAGGGCGTGGAGGGCGTGGCCGC
CCTGGGGGAGGCGCTGTCCGCGGAGCGCTTTCCGCGCCTCGCGGCGCTGT
CGATCAACAGCTGCCGCCTCGGCGACAAGCAGCTGTGCGCTCTGGCGGCG
ACGCTGCCGGGCATGAGCCGCACGCTCAAGACCCTGAGCTTCCGGAGCAA
CTACGCCCTGTCCTCCGTCGGCGTTTCGGCGCTCGCCGAGGCTCTCCGGG
CACCAGCAACCGCGACGAACGCCGGTAGTGCTACGACCGCAACTCCGACT
AAGCCGGGTTTTGCCCCGACTGCGGGGTGTCCCCTGAGCTGCTCCGCCTC
TGCCGGTGCAACTACTACCGGTGCCGGTGCTCCTACCGCTAAGAAGCCGC
TGCCGGAGAGGGCTCCCGCGTGGTGGGTTCCTTCCTCGTCGCCACCGCCG
CCGCCGCCCCCCTCCGCTACCAACTGCCCGCGACCGACCGCCGCAGCAGC
GGCGGCCAGCGCCGCCCCGGCCCGTCTCACGATCGAGTCGCTGGACCTGT
CTTACAGCTGCTGGTGGAACCGCCCTGAGCGGGCGGCCCGCACGGGGTCC
GAGAGCTCGGCGGGGGGCGGCGGCGGCCCGTTCGCGGGCCTGCTGAAGAT
TCTCGGGGAGGGGGTCGCCTGTCCGTCTCTCCGGAGCCTCCGCCTGGAGG
GCTGCTACCTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9452:2413..5973-

>mRNA_Ecto-sp8_S_contig9452.30981.1 ID=mRNA_Ecto-sp8_S_contig9452.30981.1|Name=mRNA_Ecto-sp8_S_contig9452.30981.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1746bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9452:2413..5973- (Ectocarpus species8 EcLAC_412)
ATGCGGAGCCTCTCGCCCAATGTGGTTGAGCACATCCTGCAGTGGCTGGA
CCTCGCCTCCCACCTGCGGCTGCGCGAGGCTAGCACCTTCGACCGCGACG
AGACGCCGCGGCGCACTACGACCCTGGCAGCACGGGGCAGCGAGCAGGCT
AGGCGATGCCAGCTGGTTATCTTTACCCCCGACAAGAAGACCCGCCTTCA
CAGCATCACGCTGGACGTCACGGCGCCGAGCAGCGGCAGCAGCAGCAGCA
GCTGCGGCATGGCACCGACGCAGCACCTGTCGTCCTTCAACTCTTCGTTC
TCCTCTTTTCTGGACGAAGCTAGCTGCGGCACGCGGCGCAAATCGCTCCC
CTTGCTGATCCGGGAACATCGCCCTGCCGAGATCAGGTTCAAGAACATGG
TCCGCGGACGCGAGTTCTCCGAGGCACTCCGGTCGCTCGAACTAAACATC
GACCAAGTCCGCGAGAGCCTTTGCGTCCTCGACTTCGGGCTCACCGCGGG
AGGCCCCCGCCCTTACCAAGACCCCCGCTCCCACCACTGGTGCATGCTAA
GGCTTCGGCGGCTGCTTGGGCCTGCCCCACTCGCCGCGGTCGGCGGCGCT
GGCGGGGGGAGCGAGGACGAGGAGGAGGGCGCGGTTAACACGGAGCTGGC
CCAGCTAACCGTAGAGCTCATCGGGGCCGCCAACGCCGCTATGCTAGTGC
CGCACTTGATTCACGGGCTCACGGGTGAGGAGCAGGGTGCCGGGGAGACA
CCAAGCGCGGAGGAGGTTAGGCCGGCGGCGGCGACGCTTGGGGCGCAAGT
GGGAGGGTTGAAGGCCTACTGGCCGTGCTTGCGTGAGCTCACGCTGTCGT
GTGGAATCATGCGTGGGGACCTCGAAGACTTGGCAGGGTGCTTAGGAAGC
TTGCCAGCGCTTGAGGTGCTAGTACTGGCGGGTCACTCCTACCGTGCACC
GCAGACGACCCTCGTTGCCTTCGCGCGTGCCTTGCACGAGCCCGCCGCCT
CGCCGGCAGCACCGATCAGGCCCCGGCGACTGAGGATGCTGTCGCTGAAG
CACTTCACGGTCGAGGGCGTGGAGGGCGTGGCCGCCCTGGGGGAGGCGCT
GTCCGCGGAGCGCTTTCCGCGCCTCGCGGCGCTGTCGATCAACAGCTGCC
GCCTCGGCGACAAGCAGCTGTGCGCTCTGGCGGCGACGCTGCCGGGCATG
AGCCGCACGCTCAAGACCCTGAGCTTCCGGAGCAACTACGCCCTGTCCTC
CGTCGGCGTTTCGGCGCTCGCCGAGGCTCTCCGGGCACCAGCAACCGCGA
CGAACGCCGGTAGTGCTACGACCGCAACTCCGACTAAGCCGGGTTTTGCC
CCGACTGCGGGGTGTCCCCTGAGCTGCTCCGCCTCTGCCGGTGCAACTAC
TACCGGTGCCGGTGCTCCTACCGCTAAGAAGCCGCTGCCGGAGAGGGCTC
CCGCGTGGTGGGTTCCTTCCTCGTCGCCACCGCCGCCGCCGCCCCCCTCC
GCTACCAACTGCCCGCGACCGACCGCCGCAGCAGCGGCGGCCAGCGCCGC
CCCGGCCCGTCTCACGATCGAGTCGCTGGACCTGTCTTACAGCTGCTGGT
GGAACCGCCCTGAGCGGGCGGCCCGCACGGGGTCCGAGAGCTCGGCGGGG
GGCGGCGGCGGCCCGTTCGCGGGCCTGCTGAAGATTCTCGGGGAGGGGGT
CGCCTGTCCGTCTCTCCGGAGCCTCCGCCTGGAGGGCTGCTACCTG
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