mRNA_Ecto-sp8_S_contig94184.30933.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig94184.30933.1
Unique NamemRNA_Ecto-sp8_S_contig94184.30933.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig94184.30933.1 vs. uniprot
Match: D7FXA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXA2_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.500e-20
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:    1 EWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLE 123
            EWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLE
Sbjct:   65 EWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLE 105
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BLAST of mRNA_Ecto-sp8_S_contig94184.30933.1 vs. uniprot
Match: A0A6G0XHV2_9STRA (Splicing factor subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHV2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.960e-15
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 EWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLE 123
            EWA NQHRD++ASHIGHSD+L YFAVAEN ++GRVR+ +LE
Sbjct:   31 EWAVNQHRDTLASHIGHSDMLAYFAVAENESIGRVRFNMLE 71
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BLAST of mRNA_Ecto-sp8_S_contig94184.30933.1 vs. uniprot
Match: H3G531_PHYRM (Splicing factor subunit n=20 Tax=Oomycota TaxID=4762 RepID=H3G531_PHYRM)

HSP 1 Score: 70.9 bits (172), Expect = 5.090e-15
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 EWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLE 123
            EWA NQHRD++ASH+GHSD+L YFAVAEN ++GRVRY +LE
Sbjct:   32 EWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLE 72
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BLAST of mRNA_Ecto-sp8_S_contig94184.30933.1 vs. uniprot
Match: A0A1W0A9Q9_9STRA (Splicing factor subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9Q9_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 7.040e-15
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 EWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLE 123
            EWA NQHRD++ASHIGH D+L YFAVAEN ++GRVRY +LE
Sbjct:   31 EWAVNQHRDTLASHIGHKDMLAYFAVAENESIGRVRYAMLE 71
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BLAST of mRNA_Ecto-sp8_S_contig94184.30933.1 vs. uniprot
Match: A0A482SBV5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBV5_9ARCH)

HSP 1 Score: 70.1 bits (170), Expect = 9.020e-15
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 EWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLEV 126
            EWA NQHRDSIAS +GH+D+L YF++A+N ++GRVRYQLLEV
Sbjct:   31 EWAVNQHRDSIASFVGHADMLSYFSLAQNESIGRVRYQLLEV 72
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BLAST of mRNA_Ecto-sp8_S_contig94184.30933.1 vs. uniprot
Match: A0A3R7ANY8_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7ANY8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 9.100e-15
Identity = 29/43 (67.44%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 EWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLEVT 129
            EWA NQHRD+++SHIGH+D+L YFAVAEN ++GRVR+ +LEV+
Sbjct:   30 EWAVNQHRDTLSSHIGHNDMLSYFAVAENESIGRVRFNMLEVS 72
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BLAST of mRNA_Ecto-sp8_S_contig94184.30933.1 vs. uniprot
Match: A0A662XDD1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XDD1_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.240e-14
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 EWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLE 123
            EWA NQHRD++ASH+GHSD+L +FAVAEN A+GRVRY +LE
Sbjct:   82 EWAVNQHRDTLASHLGHSDMLAFFAVAENEAIGRVRYNMLE 122
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BLAST of mRNA_Ecto-sp8_S_contig94184.30933.1 vs. uniprot
Match: F0W9E9_9STRA (Splicing factor subunit n=2 Tax=Albugo TaxID=65356 RepID=F0W9E9_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.420e-14
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 EWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLE 123
            EWA NQHRD++ASHIGH+D+L+YFAVAEN ++ RVRY +LE
Sbjct:   31 EWALNQHRDTLASHIGHADMLLYFAVAENESIARVRYNMLE 71
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BLAST of mRNA_Ecto-sp8_S_contig94184.30933.1 vs. uniprot
Match: A0A8J5IQX8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IQX8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.450e-14
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 EWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLE 123
            EWA NQHRD++ASH+GHSD+L YFAVAEN ++GRVRY +LE
Sbjct:   74 EWAVNQHRDTLASHLGHSDMLAYFAVAENESMGRVRYNMLE 114
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BLAST of mRNA_Ecto-sp8_S_contig94184.30933.1 vs. uniprot
Match: A0A662XYC3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYC3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.280e-14
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 EWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLE 123
            EWA NQHRD++ASH+GHSD+L +FAVAEN A+GRVRY +LE
Sbjct:  110 EWAVNQHRDTLASHLGHSDMLAFFAVAENEAIGRVRYNMLE 150
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94184.30933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXA2_ECTSI1.500e-20100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6G0XHV2_9STRA4.960e-1573.17Splicing factor subunit n=1 Tax=Aphanomyces euteic... [more]
H3G531_PHYRM5.090e-1573.17Splicing factor subunit n=20 Tax=Oomycota TaxID=47... [more]
A0A1W0A9Q9_9STRA7.040e-1573.17Splicing factor subunit n=1 Tax=Thraustotheca clav... [more]
A0A482SBV5_9ARCH9.020e-1571.43Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A3R7ANY8_9STRA9.100e-1567.44Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A662XDD1_9STRA1.240e-1473.17Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
F0W9E9_9STRA1.420e-1470.73Splicing factor subunit n=2 Tax=Albugo TaxID=65356... [more]
A0A8J5IQX8_9STRA1.450e-1473.17Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A662XYC3_9STRA2.280e-1473.17Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94184contigEcto-sp8_S_contig94184:1..129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score85.9
Seed ortholog evalue5.1e-15
Seed eggNOG ortholog2880.D7FXA2
Preferred nameSF3B5
Model size129
KEGG koko:K08790,ko:K12832,ko:K19485
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045292,GO:0046483,GO:0048232,GO:0048609,GO:0050789,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0120114,GO:1901360,GO:1990904
Exons1
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG3485@1,KOG3485@2759
EC2.7.11.1
Cds size129
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145299.423328-CDS-Ecto-sp8_S_contig94184:0..1291681145299.423328-CDS-Ecto-sp8_S_contig94184:0..129Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94184 1..129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94184.30933.1prot_Ecto-sp8_S_contig94184.30933.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig94184 1..129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig94184.30933.1

>prot_Ecto-sp8_S_contig94184.30933.1 ID=prot_Ecto-sp8_S_contig94184.30933.1|Name=mRNA_Ecto-sp8_S_contig94184.30933.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=43bp
EWATNQHRDSIASHIGHSDLLMYFAVAENNAVGRVRYQLLEVT
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mRNA from alignment at Ecto-sp8_S_contig94184:1..129+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig94184.30933.1 ID=mRNA_Ecto-sp8_S_contig94184.30933.1|Name=mRNA_Ecto-sp8_S_contig94184.30933.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=129bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94184:1..129+ (Ectocarpus species8 EcLAC_412)
GAATGGGCAACAAACCAGCACCGAGACTCTATCGCATCACACATTGGACA
CAGCGACTTGCTGATGTACTTTGCCGTGGCGGAGAACAATGCCGTGGGCC
GTGTGCGGTACCAGCTGCTCGAGGTAACT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig94184:1..129+

>mRNA_Ecto-sp8_S_contig94184.30933.1 ID=mRNA_Ecto-sp8_S_contig94184.30933.1|Name=mRNA_Ecto-sp8_S_contig94184.30933.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94184:1..129+ (Ectocarpus species8 EcLAC_412)
GAATGGGCAACAAACCAGCACCGAGACTCTATCGCATCACACATTGGACA
CAGCGACTTGCTGATGTACTTTGCCGTGGCGGAGAACAATGCCGTGGGCC
GTGTGCGGTACCAGCTGCTCGAGGTAACT
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