mRNA_Ecto-sp8_S_contig94023.30907.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig94023.30907.1
Unique NamemRNA_Ecto-sp8_S_contig94023.30907.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: UPI000C762D11 (eukaryotic translation initiation factor 4E-1A-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C762D11)

HSP 1 Score: 82.8 bits (203), Expect = 4.600e-18
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    1 EEMPENRDKLGDLVDKMDNVKISENGVA--DPEKIIKHPLQNAWTLWFFKNDKARS 162
            +E  E  DK+GD+VD+MD VKISE+ +    PEK++KHPLQNAWTLWFFKNDKARS
Sbjct:   16 DETVEKLDKMGDIVDQMDKVKISESEICLNGPEKVVKHPLQNAWTLWFFKNDKARS 71          
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: IF4E_APLCA (Eukaryotic translation initiation factor 4E n=1 Tax=Aplysia californica TaxID=6500 RepID=IF4E_APLCA)

HSP 1 Score: 57.8 bits (138), Expect = 1.170e-8
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1
Query:   52 DNVKISENGVADPEKIIKHPLQNAWTLWFFKNDKAR 159
            D  ++ E  V DP+ +IKHPLQN+W +WFFKNDK+R
Sbjct:   17 DEPEVEEERVPDPDMVIKHPLQNSWAMWFFKNDKSR 52          
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: UPI00065B69BF (eukaryotic translation initiation factor 4E isoform X1 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00065B69BF)

HSP 1 Score: 57.8 bits (138), Expect = 1.780e-8
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1
Query:   52 DNVKISENGVADPEKIIKHPLQNAWTLWFFKNDKAR 159
            D  ++ E  V DP+ +IKHPLQN+W +WFFKNDK+R
Sbjct:   71 DEPEVEEERVPDPDMVIKHPLQNSWAMWFFKNDKSR 106          
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: A0A553PRR2_TIGCA (eIF-4F 25 kDa subunit n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PRR2_TIGCA)

HSP 1 Score: 57.0 bits (136), Expect = 1.950e-8
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1
Query:   37 LVDKMDNVKISENGVADPEKIIKHPLQNAWTLWFFKNDKARS 162
            L +  DN K   N   DPE +IKHPLQN+WTLWF+KND++R+
Sbjct:    9 LTNSKDN-KEQTNSTPDPELLIKHPLQNSWTLWFYKNDRSRN 49          
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: A0A0G2JG98_MOUSE (Eukaryotic translation initiation factor 4E n=10 Tax=Boreoeutheria TaxID=1437010 RepID=A0A0G2JG98_MOUSE)

HSP 1 Score: 53.5 bits (127), Expect = 4.660e-8
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 1
Query:   67 SENGVADPEKIIKHPLQNAWTLWFFKNDKARS 162
            S   VA+PE  IKHPLQN W LWFFKNDK+++
Sbjct:   24 SNQEVANPEHYIKHPLQNRWALWFFKNDKSKT 55          
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: A3KLJ2_STRPU (Eukaryotic translation initiation factor 4E n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A3KLJ2_STRPU)

HSP 1 Score: 56.2 bits (134), Expect = 4.840e-8
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 1
Query:   73 NGVADPEKIIKHPLQNAWTLWFFKNDKARS 162
            N V DPE +IKHPLQ+ W++WFFKNDKA+S
Sbjct:   34 NQVVDPESLIKHPLQSRWSMWFFKNDKAKS 63          
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: UPI000CD63644 (eukaryotic translation initiation factor 4E-like n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=UPI000CD63644)

HSP 1 Score: 53.9 bits (128), Expect = 6.070e-8
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1
Query:   52 DNVKISENGVADPEKIIKHPLQNAWTLWFFKNDKARS 162
            +NV+ +   V  PE  IKHPLQN W+LWFFKNDK+++
Sbjct:   29 ENVEETNQEVLSPEPYIKHPLQNRWSLWFFKNDKSKT 65          
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: A0A2C9K1G4_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9K1G4_BIOGL)

HSP 1 Score: 55.8 bits (133), Expect = 6.320e-8
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1
Query:   52 DNVKISENGVADPEKIIKHPLQNAWTLWFFKNDKAR 159
            D  K   + V DPE +IKHPLQN+W +WFFKNDK R
Sbjct:   20 DEEKDDIDDVLDPESVIKHPLQNSWAMWFFKNDKGR 55          
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: A0A3B3R131_9TELE (Uncharacterized protein n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3R131_9TELE)

HSP 1 Score: 53.9 bits (128), Expect = 6.340e-8
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1
Query:   52 DNVKISENGVADPEKIIKHPLQNAWTLWFFKNDKARS 162
            +NV+ +   V  PE  IKHPLQN W+LWFFKNDK+++
Sbjct:   18 ENVEETNQEVLSPEPYIKHPLQNRWSLWFFKNDKSKT 54          
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: UPI001EB09185 (eukaryotic translation initiation factor 4E-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EB09185)

HSP 1 Score: 55.8 bits (133), Expect = 6.550e-8
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 1
Query:   58 VKISENGVADPEKIIKHPLQNAWTLWFFKNDKAR 159
            + + ++ VA PE +IKHPLQN W+LWFFKNDK R
Sbjct:   26 IAVVDDAVASPEMLIKHPLQNRWSLWFFKNDKNR 59          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C762D114.600e-1867.86eukaryotic translation initiation factor 4E-1A-lik... [more]
IF4E_APLCA1.170e-858.33Eukaryotic translation initiation factor 4E n=1 Ta... [more]
UPI00065B69BF1.780e-858.33eukaryotic translation initiation factor 4E isofor... [more]
A0A553PRR2_TIGCA1.950e-857.14eIF-4F 25 kDa subunit n=1 Tax=Tigriopus californic... [more]
A0A0G2JG98_MOUSE4.660e-865.63Eukaryotic translation initiation factor 4E n=10 T... [more]
A3KLJ2_STRPU4.840e-870.00Eukaryotic translation initiation factor 4E n=1 Ta... [more]
UPI000CD636446.070e-856.76eukaryotic translation initiation factor 4E-like n... [more]
A0A2C9K1G4_BIOGL6.320e-861.11Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
A0A3B3R131_9TELE6.340e-856.76Uncharacterized protein n=1 Tax=Paramormyrops king... [more]
UPI001EB091856.550e-861.76eukaryotic translation initiation factor 4E-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig94023contigEcto-sp8_S_contig94023:441..602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size156
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145297.473035-UTR-Ecto-sp8_S_contig94023:440..4461681145297.473035-UTR-Ecto-sp8_S_contig94023:440..446Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig94023 441..446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145297.4838686-CDS-Ecto-sp8_S_contig94023:446..6021681145297.4838686-CDS-Ecto-sp8_S_contig94023:446..602Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig94023 447..602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig94023.30907.1prot_Ecto-sp8_S_contig94023.30907.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig94023 447..602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig94023.30907.1

>prot_Ecto-sp8_S_contig94023.30907.1 ID=prot_Ecto-sp8_S_contig94023.30907.1|Name=mRNA_Ecto-sp8_S_contig94023.30907.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=52bp
MPENRDKLGDLVDKMDNVKISENGVADPEKIIKHPLQNAWTLWFFKNDKA
RS
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mRNA from alignment at Ecto-sp8_S_contig94023:441..602+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig94023.30907.1 ID=mRNA_Ecto-sp8_S_contig94023.30907.1|Name=mRNA_Ecto-sp8_S_contig94023.30907.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94023:441..602+ (Ectocarpus species8 EcLAC_412)
GAGGAGATGCCCGAGAATCGTGACAAACTTGGTGACTTGGTGGACAAAAT GGACAATGTTAAAATCTCTGAAAACGGCGTGGCTGACCCAGAAAAGATTA TCAAACACCCTCTTCAGAACGCCTGGACCCTGTGGTTCTTTAAGAATGAC AAGGCCCGCTCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig94023:441..602+

>mRNA_Ecto-sp8_S_contig94023.30907.1 ID=mRNA_Ecto-sp8_S_contig94023.30907.1|Name=mRNA_Ecto-sp8_S_contig94023.30907.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94023:441..602+ (Ectocarpus species8 EcLAC_412)
ATGCCCGAGAATCGTGACAAACTTGGTGACTTGGTGGACAAAATGGACAA
TGTTAAAATCTCTGAAAACGGCGTGGCTGACCCAGAAAAGATTATCAAAC
ACCCTCTTCAGAACGCCTGGACCCTGTGGTTCTTTAAGAATGACAAGGCC
CGCTCG
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