mRNA_Ecto-sp8_S_contig94023.30907.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: UPI000C762D11 (eukaryotic translation initiation factor 4E-1A-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C762D11) HSP 1 Score: 82.8 bits (203), Expect = 4.600e-18 Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query: 1 EEMPENRDKLGDLVDKMDNVKISENGVA--DPEKIIKHPLQNAWTLWFFKNDKARS 162
+E E DK+GD+VD+MD VKISE+ + PEK++KHPLQNAWTLWFFKNDKARS
Sbjct: 16 DETVEKLDKMGDIVDQMDKVKISESEICLNGPEKVVKHPLQNAWTLWFFKNDKARS 71
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: IF4E_APLCA (Eukaryotic translation initiation factor 4E n=1 Tax=Aplysia californica TaxID=6500 RepID=IF4E_APLCA) HSP 1 Score: 57.8 bits (138), Expect = 1.170e-8 Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1
Query: 52 DNVKISENGVADPEKIIKHPLQNAWTLWFFKNDKAR 159
D ++ E V DP+ +IKHPLQN+W +WFFKNDK+R
Sbjct: 17 DEPEVEEERVPDPDMVIKHPLQNSWAMWFFKNDKSR 52
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: UPI00065B69BF (eukaryotic translation initiation factor 4E isoform X1 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00065B69BF) HSP 1 Score: 57.8 bits (138), Expect = 1.780e-8 Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1
Query: 52 DNVKISENGVADPEKIIKHPLQNAWTLWFFKNDKAR 159
D ++ E V DP+ +IKHPLQN+W +WFFKNDK+R
Sbjct: 71 DEPEVEEERVPDPDMVIKHPLQNSWAMWFFKNDKSR 106
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: A0A553PRR2_TIGCA (eIF-4F 25 kDa subunit n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PRR2_TIGCA) HSP 1 Score: 57.0 bits (136), Expect = 1.950e-8 Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1
Query: 37 LVDKMDNVKISENGVADPEKIIKHPLQNAWTLWFFKNDKARS 162
L + DN K N DPE +IKHPLQN+WTLWF+KND++R+
Sbjct: 9 LTNSKDN-KEQTNSTPDPELLIKHPLQNSWTLWFYKNDRSRN 49
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: A0A0G2JG98_MOUSE (Eukaryotic translation initiation factor 4E n=10 Tax=Boreoeutheria TaxID=1437010 RepID=A0A0G2JG98_MOUSE) HSP 1 Score: 53.5 bits (127), Expect = 4.660e-8 Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 1
Query: 67 SENGVADPEKIIKHPLQNAWTLWFFKNDKARS 162
S VA+PE IKHPLQN W LWFFKNDK+++
Sbjct: 24 SNQEVANPEHYIKHPLQNRWALWFFKNDKSKT 55
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: A3KLJ2_STRPU (Eukaryotic translation initiation factor 4E n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A3KLJ2_STRPU) HSP 1 Score: 56.2 bits (134), Expect = 4.840e-8 Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 1
Query: 73 NGVADPEKIIKHPLQNAWTLWFFKNDKARS 162
N V DPE +IKHPLQ+ W++WFFKNDKA+S
Sbjct: 34 NQVVDPESLIKHPLQSRWSMWFFKNDKAKS 63
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: UPI000CD63644 (eukaryotic translation initiation factor 4E-like n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=UPI000CD63644) HSP 1 Score: 53.9 bits (128), Expect = 6.070e-8 Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1
Query: 52 DNVKISENGVADPEKIIKHPLQNAWTLWFFKNDKARS 162
+NV+ + V PE IKHPLQN W+LWFFKNDK+++
Sbjct: 29 ENVEETNQEVLSPEPYIKHPLQNRWSLWFFKNDKSKT 65
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: A0A2C9K1G4_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9K1G4_BIOGL) HSP 1 Score: 55.8 bits (133), Expect = 6.320e-8 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1
Query: 52 DNVKISENGVADPEKIIKHPLQNAWTLWFFKNDKAR 159
D K + V DPE +IKHPLQN+W +WFFKNDK R
Sbjct: 20 DEEKDDIDDVLDPESVIKHPLQNSWAMWFFKNDKGR 55
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: A0A3B3R131_9TELE (Uncharacterized protein n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3R131_9TELE) HSP 1 Score: 53.9 bits (128), Expect = 6.340e-8 Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1
Query: 52 DNVKISENGVADPEKIIKHPLQNAWTLWFFKNDKARS 162
+NV+ + V PE IKHPLQN W+LWFFKNDK+++
Sbjct: 18 ENVEETNQEVLSPEPYIKHPLQNRWSLWFFKNDKSKT 54
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Match: UPI001EB09185 (eukaryotic translation initiation factor 4E-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EB09185) HSP 1 Score: 55.8 bits (133), Expect = 6.550e-8 Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 1
Query: 58 VKISENGVADPEKIIKHPLQNAWTLWFFKNDKAR 159
+ + ++ VA PE +IKHPLQN W+LWFFKNDK R
Sbjct: 26 IAVVDDAVASPEMLIKHPLQNRWSLWFFKNDKNR 59 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig94023.30907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig94023.30907.1 >prot_Ecto-sp8_S_contig94023.30907.1 ID=prot_Ecto-sp8_S_contig94023.30907.1|Name=mRNA_Ecto-sp8_S_contig94023.30907.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=52bp MPENRDKLGDLVDKMDNVKISENGVADPEKIIKHPLQNAWTLWFFKNDKAback to top mRNA from alignment at Ecto-sp8_S_contig94023:441..602+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig94023.30907.1 ID=mRNA_Ecto-sp8_S_contig94023.30907.1|Name=mRNA_Ecto-sp8_S_contig94023.30907.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94023:441..602+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig94023:441..602+ >mRNA_Ecto-sp8_S_contig94023.30907.1 ID=mRNA_Ecto-sp8_S_contig94023.30907.1|Name=mRNA_Ecto-sp8_S_contig94023.30907.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp8_S_contig94023:441..602+ (Ectocarpus species8 EcLAC_412)back to top |