mRNA_Ecto-sp8_S_contig9390.30883.1 (mRNA) Ectocarpus species8 EcLAC_412
|
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig9390.30883.1 vs. uniprot
Match: A0A6H5KJK8_9PHAE (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJK8_9PHAE) HSP 1 Score: 481 bits (1237), Expect = 1.640e-169 Identity = 247/269 (91.82%), Postives = 251/269 (93.31%), Query Frame = 1
Query: 1 MSAPPLPDFWTEEKDTKGRTYFSNHRTQETTWERPVASVPQGGPDLPPPYGXXXXXXXXXXXXXXAARSGPCCTPRLTFWISCALGWVIWVFAVAASADDKWAKIDGFDIGAGDEDILDGCDSSDDVCSLYKAFTAMQFIAAVVVSVSMVLFTLALFRPAAGLKCCSVKSLAIAAGSLMMAFAFFEMLAFVLIIVIEKELDGEFSTGFGFGEADLGATFGVAVVAVVLGVVQAVSVLTFARSSGDGPFFKCFNECMAMNNAPNAAAVPT 807
MSAPPLP+FWTEEKD KGRTYFSNHRTQETTWERPVASVPQ GPDLPPPYG AARSGPCCTPRLTFWISCALGWVIWVFAVAASADDKWAKIDGFDIGAGDEDILD CDSSDDVCSLYKAFTAMQFIAAVVVSVSMVLFTLALFRPAAGLKCCSVKSLAIAAGSLMMAFAFFEMLAFVLIIVIEKELDGEF+TGFGFGEADLGATFG+AVVAVVLGVVQAVSVLTFARSSGDGPFFKC NECMAMNNAPNAAA+PT
Sbjct: 1 MSAPPLPEFWTEEKDAKGRTYFSNHRTQETTWERPVASVPQRGPDLPPPYGGNAAHCAAVAAPQ-AARSGPCCTPRLTFWISCALGWVIWVFAVAASADDKWAKIDGFDIGAGDEDILDDCDSSDDVCSLYKAFTAMQFIAAVVVSVSMVLFTLALFRPAAGLKCCSVKSLAIAAGSLMMAFAFFEMLAFVLIIVIEKELDGEFNTGFGFGEADLGATFGLAVVAVVLGVVQAVSVLTFARSSGDGPFFKCLNECMAMNNAPNAAAIPT 268
BLAST of mRNA_Ecto-sp8_S_contig9390.30883.1 vs. uniprot
Match: A0A6H5L0F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0F7_9PHAE) HSP 1 Score: 153 bits (386), Expect = 5.310e-41 Identity = 92/223 (41.26%), Postives = 129/223 (57.85%), Query Frame = 1
Query: 217 CTPRLTFWISCALGWVIWVFAVAASADDKWAKIDGFD--IGAGDEDILDGCDSSDD-----------------VCSLYKAFTAMQFIAAVVVSVSMVLFTLALFRPAAGLKCCSVKSLAIAAGSLMMAFAFFEMLAFVLIIVIEKELDG--------------EFSTGFGFG-EADLGATFGVAVVAVVLGVVQAVSVLTFARSSGDGPFFKCFNECMAMNNA 783
CTPRLTFW+ A W++W+FAV+A+ADDKW K +G + AG++ +L+ CD DD +C LY+AFTAMQ +A +V SVS++L LA FRP AG KC S ++LA G+LM +A F+++A VL V+ +E D F T F G EA++G TFGV V A++L V+ V + A +GDGP +KC + M N +
Sbjct: 18 CTPRLTFWVIAASSWLVWIFAVSAAADDKWIKDNGQGDWLAAGEDPVLNLCDGLDDAADDDLLATDEYKDFVSICDLYRAFTAMQMLATIVCSVSVLLLALAFFRPEAG-KCASTRTLAFVGGALMATYALFQLVAVVLAAVLAQEFDNLPNDDDTSYLSGYDGFYTFFEAGYEAEVGPTFGVGVTALILAVIMTVVLCLCATRTGDGPLYKCCHSLMLANKS 239
BLAST of mRNA_Ecto-sp8_S_contig9390.30883.1 vs. uniprot
Match: A0A6H5JD07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD07_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 3.040e-10 Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 1
Query: 268 WVFAVAASADDKWAKIDGFDIGAGDEDILDGCDSSDDVCSLYKAFTAMQFIAAVVVSVSMVLFTLALFRPAAGLKCCSVKSLAIAAGSLMMAFAFFEMLAF 570
W+FAVAA+ADD W D ++ G G+ CD D C LYKA TA Q++A +VVSV +V+ +A F PA L +A G ++ FA FE+LAF
Sbjct: 21 WIFAVAAAADDAWIA-DAYEAGLGES-----CDGYD-FCGLYKAATAFQYLATIVVSVVLVMVVVAAFTPAP-----VTGKLGLAVGIMLFVFAVFELLAF 109
BLAST of mRNA_Ecto-sp8_S_contig9390.30883.1 vs. uniprot
Match: A0A6P8UT60_GYMAC (HECT-type E3 ubiquitin transferase n=1 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8UT60_GYMAC) HSP 1 Score: 57.0 bits (136), Expect = 1.910e-5 Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 1
Query: 1 MSAPPLPDFWTEEKDTKGRTYFSNHRTQETTWERPVASVPQGG 129
++ P LP W E KD KGRTYF NH ++ TTW RP+ + +GG
Sbjct: 386 LTTPGLPPGWEERKDGKGRTYFVNHNSRNTTWTRPIVQLTEGG 428
BLAST of mRNA_Ecto-sp8_S_contig9390.30883.1 vs. uniprot
Match: UPI00146AE23F (E3 ubiquitin-protein ligase NEDD4-like isoform X13 n=1 Tax=Pseudochaenichthys georgianus TaxID=52239 RepID=UPI00146AE23F) HSP 1 Score: 57.0 bits (136), Expect = 1.910e-5 Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 1
Query: 1 MSAPPLPDFWTEEKDTKGRTYFSNHRTQETTWERPVASVPQGG 129
++ P LP W E KD KGRTYF NH ++ TTW RP+ + +GG
Sbjct: 386 LTTPGLPPGWEERKDGKGRTYFVNHNSRNTTWTRPIVQLTEGG 428
BLAST of mRNA_Ecto-sp8_S_contig9390.30883.1 vs. uniprot
Match: A0A6P8V3U2_GYMAC (HECT-type E3 ubiquitin transferase n=1 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8V3U2_GYMAC) HSP 1 Score: 57.0 bits (136), Expect = 1.910e-5 Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 1
Query: 1 MSAPPLPDFWTEEKDTKGRTYFSNHRTQETTWERPVASVPQGG 129
++ P LP W E KD KGRTYF NH ++ TTW RP+ + +GG
Sbjct: 387 LTTPGLPPGWEERKDGKGRTYFVNHNSRNTTWTRPIVQLTEGG 429
BLAST of mRNA_Ecto-sp8_S_contig9390.30883.1 vs. uniprot
Match: A0A6P8UQY9_GYMAC (HECT-type E3 ubiquitin transferase n=1 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8UQY9_GYMAC) HSP 1 Score: 57.0 bits (136), Expect = 1.920e-5 Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 1
Query: 1 MSAPPLPDFWTEEKDTKGRTYFSNHRTQETTWERPVASVPQGG 129
++ P LP W E KD KGRTYF NH ++ TTW RP+ + +GG
Sbjct: 386 LTTPGLPPGWEERKDGKGRTYFVNHNSRNTTWTRPIVQLTEGG 428
BLAST of mRNA_Ecto-sp8_S_contig9390.30883.1 vs. uniprot
Match: A0A6P8UV64_GYMAC (HECT-type E3 ubiquitin transferase n=1 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8UV64_GYMAC) HSP 1 Score: 57.0 bits (136), Expect = 1.920e-5 Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 1
Query: 1 MSAPPLPDFWTEEKDTKGRTYFSNHRTQETTWERPVASVPQGG 129
++ P LP W E KD KGRTYF NH ++ TTW RP+ + +GG
Sbjct: 387 LTTPGLPPGWEERKDGKGRTYFVNHNSRNTTWTRPIVQLTEGG 429
BLAST of mRNA_Ecto-sp8_S_contig9390.30883.1 vs. uniprot
Match: UPI00146EE298 (E3 ubiquitin-protein ligase NEDD4-like isoform X11 n=2 Tax=Pseudochaenichthys georgianus TaxID=52239 RepID=UPI00146EE298) HSP 1 Score: 57.0 bits (136), Expect = 1.920e-5 Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 1
Query: 1 MSAPPLPDFWTEEKDTKGRTYFSNHRTQETTWERPVASVPQGG 129
++ P LP W E KD KGRTYF NH ++ TTW RP+ + +GG
Sbjct: 387 LTTPGLPPGWEERKDGKGRTYFVNHNSRNTTWTRPIVQLTEGG 429
BLAST of mRNA_Ecto-sp8_S_contig9390.30883.1 vs. uniprot
Match: A0A6P8VW16_GYMAC (HECT-type E3 ubiquitin transferase n=1 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8VW16_GYMAC) HSP 1 Score: 57.0 bits (136), Expect = 1.920e-5 Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 1
Query: 1 MSAPPLPDFWTEEKDTKGRTYFSNHRTQETTWERPVASVPQGG 129
++ P LP W E KD KGRTYF NH ++ TTW RP+ + +GG
Sbjct: 399 LTTPGLPPGWEERKDGKGRTYFVNHNSRNTTWTRPIVQLTEGG 441 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9390.30883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig9390.30883.1 >prot_Ecto-sp8_S_contig9390.30883.1 ID=prot_Ecto-sp8_S_contig9390.30883.1|Name=mRNA_Ecto-sp8_S_contig9390.30883.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=288bp MSAPPLPDFWTEEKDTKGRTYFSNHRTQETTWERPVASVPQGGPDLPPPYback to top mRNA from alignment at Ecto-sp8_S_contig9390:2499..6858+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig9390.30883.1 ID=mRNA_Ecto-sp8_S_contig9390.30883.1|Name=mRNA_Ecto-sp8_S_contig9390.30883.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4360bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9390:2499..6858+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9390:2499..6858+ >mRNA_Ecto-sp8_S_contig9390.30883.1 ID=mRNA_Ecto-sp8_S_contig9390.30883.1|Name=mRNA_Ecto-sp8_S_contig9390.30883.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=864bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9390:2499..6858+ (Ectocarpus species8 EcLAC_412)back to top |