mRNA_Ecto-sp8_S_contig93759.30861.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig93759.30861.1
Unique NamemRNA_Ecto-sp8_S_contig93759.30861.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig93759.30861.1 vs. uniprot
Match: D8LNU5_ECTSI (S5A_REDUCTASE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNU5_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 1.770e-5
Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:   34 SAAAWTYLALHGSYGYLWIVKVRKY 108
            SAAAWTYLALHGSYGYLWIVK + +
Sbjct:   49 SAAAWTYLALHGSYGYLWIVKDQTF 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig93759.30861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNU5_ECTSI1.770e-584.00S5A_REDUCTASE domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig93759contigEcto-sp8_S_contig93759:31..147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size117
Hectar predicted targeting categorysignal peptide
Exons1
Cds size117
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145293.254945-CDS-Ecto-sp8_S_contig93759:30..1471681145293.254945-CDS-Ecto-sp8_S_contig93759:30..147Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig93759 31..147 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig93759.30861.1prot_Ecto-sp8_S_contig93759.30861.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig93759 31..147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig93759.30861.1

>prot_Ecto-sp8_S_contig93759.30861.1 ID=prot_Ecto-sp8_S_contig93759.30861.1|Name=mRNA_Ecto-sp8_S_contig93759.30861.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=39bp
MLRVSAHVTWGSAAAWTYLALHGSYGYLWIVKVRKYLQ*
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mRNA from alignment at Ecto-sp8_S_contig93759:31..147-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig93759.30861.1 ID=mRNA_Ecto-sp8_S_contig93759.30861.1|Name=mRNA_Ecto-sp8_S_contig93759.30861.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=117bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93759:31..147- (Ectocarpus species8 EcLAC_412)
ATGTTACGGGTTTCCGCACACGTTACGTGGGGCAGTGCGGCGGCATGGAC
CTACCTGGCGCTTCATGGGTCTTACGGATATCTTTGGATCGTGAAGGTGC
GAAAATATCTGCAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig93759:31..147-

>mRNA_Ecto-sp8_S_contig93759.30861.1 ID=mRNA_Ecto-sp8_S_contig93759.30861.1|Name=mRNA_Ecto-sp8_S_contig93759.30861.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp8_S_contig93759:31..147- (Ectocarpus species8 EcLAC_412)
ATGTTACGGGTTTCCGCACACGTTACGTGGGGCAGTGCGGCGGCATGGAC
CTACCTGGCGCTTCATGGGTCTTACGGATATCTTTGGATCGTGAAGGTGC
GAAAATATCTGCAGTAA
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