mRNA_Ecto-sp8_S_contig9368.30849.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9368.30849.1
Unique NamemRNA_Ecto-sp8_S_contig9368.30849.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig9368.30849.1 vs. uniprot
Match: D7FPL9_ECTSI (Polyribonucleotide nucleotidyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPL9_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 6.500e-54
Identity = 98/107 (91.59%), Postives = 99/107 (92.52%), Query Frame = 1
Query:    1 HNTLQGDCYEGTVKTVHEYGCLVELLRNQQGLLHVSNMTDKLPAPPARDIVKVGDTVDVRVMEVDRLRGLIKLASESHLSSSTSKPGQGGRSPTVAGEDEEMQKASQ 321
            H   +GD YEGTV TVHEYGCLVELLRNQQGLLHVSNMTDKLPAPPARDIVKVGDTV VRVMEVDRLRGLIKLASESH SSSTSKPGQG RSPTVAGEDEEMQKASQ
Sbjct:  657 HEIEEGDFYEGTVTTVHEYGCLVELLRNQQGLLHVSNMTDKLPAPPARDIVKVGDTVGVRVMEVDRLRGLIKLASESHPSSSTSKPGQGRRSPTVAGEDEEMQKASQ 763          
BLAST of mRNA_Ecto-sp8_S_contig9368.30849.1 vs. uniprot
Match: B8C7U5_THAPS (Polyribonucleotide nucleotidyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7U5_THAPS)

HSP 1 Score: 68.9 bits (167), Expect = 2.280e-11
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   13 QGDCYEGTVKTVHEYGCLVELLRNQQGLLHVSNMTDKLPAPPA------RDIVKVGDTVDVRVMEVDRLRGLIKLASESHLSSSTSK 255
            +G  YEGTV  + ++G +VELLRN++GLLHVS + DK    P       RD +KVGD ++V   ++D ++G IKL+ +  L    SK
Sbjct:  571 EGGVYEGTVIEIKDFGAVVELLRNKEGLLHVSELADKTEKHPEGNMGLLRDHLKVGDKIEVLCTKIDHVQGSIKLSRKKLLQMRESK 657          
BLAST of mRNA_Ecto-sp8_S_contig9368.30849.1 vs. uniprot
Match: A0A7S3PD14_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PD14_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 8.640e-11
Identity = 33/83 (39.76%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   13 QGDCYEGTVKTVHEYGCLVELLRNQQGLLHVSNMTDKLPAPP--------ARDIVKVGDTVDVRVMEVDRLRGLIKLASESHL 237
            +G+ YEGT+  + ++G +VELLRN++ LLHVS +TD+              RD +KVG T+DV+ + VD ++G IK++ ++ L
Sbjct:  133 EGEIYEGTIVELKDFGAVVELLRNKEALLHVSELTDESEVKDHPEGIAGFVRDNLKVGQTIDVQCIGVDPIQGSIKVSRKAAL 215          
BLAST of mRNA_Ecto-sp8_S_contig9368.30849.1 vs. uniprot
Match: A0A3A4ZJQ9_9BACT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Microgenomates bacterium TaxID=2093373 RepID=A0A3A4ZJQ9_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 1.490e-10
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   16 GDCYEGTVKTVHEYGCLVELLRNQQGLLHVSNMTDKLPAPPARDIVKVGDTVDVRVMEVDRLRGLIKLA 222
            G+ YEG VK +  +G  VE+L NQ GLLHVS+M+++  A P  D+VK+GD V VRV E+D L G I L+
Sbjct:  620 GEIYEGEVKRMQSFGAFVEVLPNQDGLLHVSDMSEEYVANP-EDVVKLGDHVTVRVKEIDSL-GRINLS 686          
BLAST of mRNA_Ecto-sp8_S_contig9368.30849.1 vs. uniprot
Match: A0A3S2U051_9BURK (RNA-binding transcriptional accessory protein n=1 Tax=Rubrivivax albus TaxID=2499835 RepID=A0A3S2U051_9BURK)

HSP 1 Score: 65.5 bits (158), Expect = 3.810e-10
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   16 GDCYEGTVKTVHEYGCLVELLRNQQGLLHVSNMTDKLPAPPARDIVKVGDTVDVRVMEVDRLRGLIKLASESHLSSSTSKPGQGGRSP-TVAGEDE 300
            G   +GTV  V ++G  V+L  +Q GL+HVS +++K  +  AR++VK GD V VRV+EVD  RG I L  +  L ++  KPG GG +    AG DE
Sbjct:  657 GMVLQGTVSNVAQFGAFVDLGVHQDGLVHVSQLSNKFVSD-AREVVKTGDVVKVRVLEVDLQRGRISLTMK--LDAAAPKPGAGGDNRYRAAGRDE 749          
BLAST of mRNA_Ecto-sp8_S_contig9368.30849.1 vs. uniprot
Match: A0A133YXT4_9FIRM (Polyribonucleotide nucleotidyltransferase n=1 Tax=Tissierellia bacterium KA00581 TaxID=1588751 RepID=A0A133YXT4_9FIRM)

HSP 1 Score: 64.7 bits (156), Expect = 7.040e-10
Identity = 32/74 (43.24%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   16 GDCYEGTVKTVHEYGCLVELLRNQQGLLHVSNMTDKLPAPPARDIVKVGDTVDVRVMEVDRLRGLIKLASESHL 237
            G+ Y+G + T+  +G  VEL++ ++GLLH+SNMT +       D+ KVGD VDV+V+E+D  +G IKL+ ++ L
Sbjct:  621 GEVYKGVITTITNFGAFVELIKGKEGLLHISNMTHER-LNKVEDLFKVGDLVDVKVIEIDN-QGKIKLSRKALL 692          
BLAST of mRNA_Ecto-sp8_S_contig9368.30849.1 vs. uniprot
Match: A0A836CCD4_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCD4_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.870e-9
Identity = 29/72 (40.28%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   16 GDCYEGTVKTVHEYGCLVELLRNQQGLLHVSNMTDKLPAPPARDIVKVGDTVDVRVMEVDRLRGLIKLASES 231
            GD   GTV  + ++G +VE+LR + G+LHVS ++ +  + P   ++ VG  + V+ +EVD LRGLIKL+ ++
Sbjct:  717 GDVMTGTVTEIRDFGAMVEVLRGRLGVLHVSEVSHQSGSRPVTSLLTVGQKLQVKALEVDPLRGLIKLSRKA 788          
BLAST of mRNA_Ecto-sp8_S_contig9368.30849.1 vs. uniprot
Match: A0A072YNP9_CLONO (S1 motif domain-containing protein n=13 Tax=Clostridiaceae TaxID=31979 RepID=A0A072YNP9_CLONO)

HSP 1 Score: 63.2 bits (152), Expect = 2.450e-9
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   31 GTVKTVHEYGCLVELLRNQQGLLHVSNMTDKLPAPPARDIVKVGDTVDVRVMEVDRLRGLIKLA 222
            GTV+ V ++G  V++  +Q GL+H+S ++DK    P  DIVKVGD V+VRV+EVD  RG I L+
Sbjct:  653 GTVRNVADFGAFVDIGVHQDGLVHISQLSDKFVKNPL-DIVKVGDIVEVRVLEVDEKRGRISLS 715          
BLAST of mRNA_Ecto-sp8_S_contig9368.30849.1 vs. uniprot
Match: A0A6L8IEQ0_9GAMM (Polyribonucleotide nucleotidyltransferase n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A6L8IEQ0_9GAMM)

HSP 1 Score: 63.2 bits (152), Expect = 2.470e-9
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 1
Query:   16 GDCYEGTVKTVHEYGCLVELLRNQQGLLHVSNMTDKLPAPPARDIVKVGDTVDVRVMEVDRLRGLIKL 219
            G  YEGTV +V +YG  V +L    GL+H+S M+D+       D+VKVGD+V VRVMEVD  RG I+L
Sbjct:  715 GKVYEGTVSSVMDYGAFVTVLPGTDGLVHISQMSDRR-IERTSDVVKVGDSVSVRVMEVDG-RGRIRL 780          
BLAST of mRNA_Ecto-sp8_S_contig9368.30849.1 vs. uniprot
Match: A0A7V6I1M4_9BACT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V6I1M4_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 3.340e-9
Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   16 GDCYEGTVKTVHEYGCLVELLRNQQGLLHVSNMTDKLPAPPARDIVKVGDTVDVRVMEVDRLRGLIKLASESHLSSSTSKPGQGGR 273
            G+ Y G VKT+ ++G  VE+L N+ GLLH+S M D        D+ KVGD V+V+++++D+  G ++L+ ++ L     +  QG R
Sbjct:  630 GEVYVGKVKTIVQFGAFVEILPNKDGLLHISEM-DWKKTEKVEDLFKVGDEVEVKLIDIDQKTGKLRLSRKALLPRPPKESNQGNR 714          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9368.30849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPL9_ECTSI6.500e-5491.59Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
B8C7U5_THAPS2.280e-1142.53Polyribonucleotide nucleotidyltransferase (Fragmen... [more]
A0A7S3PD14_9STRA8.640e-1139.76Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A3A4ZJQ9_9BACT1.490e-1052.17Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A3S2U051_9BURK3.810e-1043.75RNA-binding transcriptional accessory protein n=1 ... [more]
A0A133YXT4_9FIRM7.040e-1043.24Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A836CCD4_9STRA1.870e-940.28Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A072YNP9_CLONO2.450e-950.00S1 motif domain-containing protein n=13 Tax=Clostr... [more]
A0A6L8IEQ0_9GAMM2.470e-951.47Polyribonucleotide nucleotidyltransferase n=3 Tax=... [more]
A0A7V6I1M4_9BACT3.340e-937.21Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9368contigEcto-sp8_S_contig9368:5986..6765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score191.0
Seed ortholog evalue2.8e-46
Seed eggNOG ortholog2880.D7FPL9
Preferred namePNPT1
Model size324
KEGG rclassRC02795
KEGG koko:K00962,ko:K17491
KEGG ReactionR00437,R00438,R00439,R00440
KEGG Pathwayko00230,ko00240,ko03018,ko04212,ko04922,map00230,map00240,map03018,map04212,map04922
KEGG ModuleM00394
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000177,GO:0000178,GO:0000957,GO:0000958,GO:0000959,GO:0000960,GO:0000962,GO:0000963,GO:0000964,GO:0000965,GO:0000966,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005783,GO:0005789,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006810,GO:0006839,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007049,GO:0007050,GO:0007346,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008408,GO:0009056,GO:0009057,GO:0009653,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0015931,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0022402,GO:0022607,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031984,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033554,GO:0034046,GO:0034097,GO:0034599,GO:0034641,GO:0034655,GO:0035198,GO:0035456,GO:0035458,GO:0035927,GO:0035928,GO:0040008,GO:0042175,GO:0042221,GO:0042788,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043457,GO:0043467,GO:0043487,GO:0043488,GO:0043631,GO:0043632,GO:0043633,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044528,GO:0045025,GO:0045786,GO:0045926,GO:0045930,GO:0045935,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051029,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051716,GO:0051726,GO:0055085,GO:0060255,GO:0061013,GO:0061014,GO:0061980,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070206,GO:0070207,GO:0070584,GO:0070717,GO:0070887,GO:0071042,GO:0071047,GO:0071310,GO:0071345,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071850,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090342,GO:0090501,GO:0090503,GO:0090615,GO:0090616,GO:0097159,GO:0097222,GO:0098798,GO:0098827,GO:0140053,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1903313,GO:1905354,GO:1990542,GO:1990904,GO:2000625,GO:2000627,GO:2000628,GO:2000630,GO:2000772
Exons2
EggNOG free text desc.polyribonucleotide nucleotidyltransferase activity
EggNOG OGsCOG1185@1,KOG1067@2759
EC2.7.7.8
Cds size324
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03016,ko03019,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145292.3281467-CDS-Ecto-sp8_S_contig9368:5985..61121681145292.3281467-CDS-Ecto-sp8_S_contig9368:5985..6112Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9368 5986..6112 -
1681145292.3497667-CDS-Ecto-sp8_S_contig9368:6568..67651681145292.3497667-CDS-Ecto-sp8_S_contig9368:6568..6765Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9368 6569..6765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9368.30849.1prot_Ecto-sp8_S_contig9368.30849.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9368 5986..6765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9368.30849.1

>prot_Ecto-sp8_S_contig9368.30849.1 ID=prot_Ecto-sp8_S_contig9368.30849.1|Name=mRNA_Ecto-sp8_S_contig9368.30849.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=108bp
HNTLQGDCYEGTVKTVHEYGCLVELLRNQQGLLHVSNMTDKLPAPPARDI
VKVGDTVDVRVMEVDRLRGLIKLASESHLSSSTSKPGQGGRSPTVAGEDE
EMQKASQ*
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mRNA from alignment at Ecto-sp8_S_contig9368:5986..6765-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9368.30849.1 ID=mRNA_Ecto-sp8_S_contig9368.30849.1|Name=mRNA_Ecto-sp8_S_contig9368.30849.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=780bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9368:5986..6765- (Ectocarpus species8 EcLAC_412)
CACAACACACTCCAGGGGGACTGCTACGAGGGAACAGTGAAGACAGTGCA CGAATACGGTTGCTTGGTGGAGCTGCTTCGCAACCAGCAGGGCCTGCTGC ATGTGTCCAACATGACCGACAAGCTGCCTGCCCCGCCAGCGAGAGATATC GTCAAAGTCGGGGACACTGTGGACGTCAGGGTCATGGAGGTGGACAGGTG AGAGAGCAGCCTCTGCAGGTTGGTGACGGACAAGTTCGGCGGACGTAAGA CATGCAGGATGAAGTGGAATTGCAGGCGTTGTGTTGCGGGTGCCTCTTCG GCGCGGCGGCTCCTCGTTACAAATCTGCGCAGAAAATCGGGGGCAAGACG CAAATTTCATGAGAAATTGGTTTGTTTGGGGCCAGCTTCCCGAGAAGAGC GTCATTTATGAGGTTTTACGACTTGGAGGTAAAGTAGCGCGCAACTCTGG CGATACCGGTTCACCCGAAGCCACAAAGTGGGGAACGCTGAGTTGCACCC ATGTAAGACGCTGGTGTCGTTTGCATTGTCACACTGCCATCTAGCGTCCG TTTGCCAGGGCTTGATCCGCGAAAGGCCTCTTGAGTCACCCTGGGTTGTC CATCCCTTGAGCACTTCCTGTCTCGTGATTCCAACCGCATCGCCTCAAAA CAGACTCCGTGGCCTGATCAAGCTTGCCTCGGAGAGCCACCTATCTTCGT CGACGTCCAAACCTGGCCAGGGGGGACGAAGTCCGACAGTGGCAGGAGAG GACGAAGAGATGCAGAAAGCGAGCCAATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9368:5986..6765-

>mRNA_Ecto-sp8_S_contig9368.30849.1 ID=mRNA_Ecto-sp8_S_contig9368.30849.1|Name=mRNA_Ecto-sp8_S_contig9368.30849.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9368:5986..6765- (Ectocarpus species8 EcLAC_412)
CACAACACACTCCAGGGGGACTGCTACGAGGGAACAGTGAAGACAGTGCA
CGAATACGGTTGCTTGGTGGAGCTGCTTCGCAACCAGCAGGGCCTGCTGC
ATGTGTCCAACATGACCGACAAGCTGCCTGCCCCGCCAGCGAGAGATATC
GTCAAAGTCGGGGACACTGTGGACGTCAGGGTCATGGAGGTGGACAGACT
CCGTGGCCTGATCAAGCTTGCCTCGGAGAGCCACCTATCTTCGTCGACGT
CCAAACCTGGCCAGGGGGGACGAAGTCCGACAGTGGCAGGAGAGGACGAA
GAGATGCAGAAAGCGAGCCAATGA
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