mRNA_Ecto-sp8_S_contig9364.30843.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9364.30843.1
Unique NamemRNA_Ecto-sp8_S_contig9364.30843.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9364.30843.1 vs. uniprot
Match: A0A6H5L374_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L374_9PHAE)

HSP 1 Score: 358 bits (920), Expect = 7.850e-122
Identity = 165/171 (96.49%), Postives = 169/171 (98.83%), Query Frame = 1 
Query:    1 KAMKRRLHELGANPARLAACLEKDECVSLMMGSMLLSRDGLLRQKGQLPAWLSRVRGWRWSFHFADKDAKRQWMTMEDLARTPWMMNFPGHVSSAVPPPPLLAVRCEFHRDFTYTDAGFHQDGLVWHFEDNHRFVKVSNYPALEVERDEKSWGWRLVNAHVTFKQERALPP 513
            K MKRRLHELGANPARLAACLEKDECVSLMMGSMLLSRDGLLRQKGQLPAWLSRVRGWRWSFHFADKDAKRQWMTMEDLARTPWMM+FPGHVSSAVPPPPLLAVRCEFHRDFTYTDAGFHQDGLVWHFEDNH FVKVSNYPALEVERDEKSWGWRL+NAHVTF+Q+RALPP
Sbjct:  244 KVMKRRLHELGANPARLAACLEKDECVSLMMGSMLLSRDGLLRQKGQLPAWLSRVRGWRWSFHFADKDAKRQWMTMEDLARTPWMMSFPGHVSSAVPPPPLLAVRCEFHRDFTYTDAGFHQDGLVWHFEDNHHFVKVSNYPALEVERDEKSWGWRLINAHVTFQQDRALPP 414
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BLAST of mRNA_Ecto-sp8_S_contig9364.30843.1 vs. uniprot
Match: D8LLT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT4_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 2.350e-38
Identity = 84/173 (48.55%), Postives = 94/173 (54.34%), Query Frame = 1 
Query:    1 KAMKRRLHELGANPARLAACLEKDECVSL--MMGSMLLSRDGLLRQKGQLPAWLSRVRGWRWSFHFADKDAKRQWMTMEDLARTPWMMNFPGHVSSAVPPPPLLAVRCEFHRDFTYTDAGFHQDGLVWHFEDNHRFVKVSNYPALEVERDEKSWGWRLVNAHVTFKQERALPP 513
            K MKRRLHELGANPARLAACLEK   +        + L+ +GL  +   LP  L                            R   + +  G   +A+                     GFHQDGLVWHFEDNHRFVKVSNYPALEVERDEKSWGWRLVNAHVTFKQERA+PP
Sbjct:    4 KVMKRRLHELGANPARLAACLEKGRPLEAEGTAAGVALAGEGLAVE---LPLLLQ--------------------------GRQAAVDDHGGPGKNAL--------------------DGFHQDGLVWHFEDNHRFVKVSNYPALEVERDEKSWGWRLVNAHVTFKQERAVPP 127
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9364.30843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L374_9PHAE7.850e-12296.49F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LLT4_ECTSI2.350e-3848.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9364contigEcto-sp8_S_contig9364:3..3793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size516
Hectar predicted targeting categoryother localisation
Exons4
Cds size510
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145291.862832-UTR-Ecto-sp8_S_contig9364:2..81681145291.862832-UTR-Ecto-sp8_S_contig9364:2..8Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9364 3..8 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145291.8775897-CDS-Ecto-sp8_S_contig9364:8..711681145291.8775897-CDS-Ecto-sp8_S_contig9364:8..71Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9364 9..71 +
1681145291.8962655-CDS-Ecto-sp8_S_contig9364:1353..15391681145291.8962655-CDS-Ecto-sp8_S_contig9364:1353..1539Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9364 1354..1539 +
1681145291.9128044-CDS-Ecto-sp8_S_contig9364:2693..28461681145291.9128044-CDS-Ecto-sp8_S_contig9364:2693..2846Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9364 2694..2846 +
1681145291.9314559-CDS-Ecto-sp8_S_contig9364:3685..37931681145291.9314559-CDS-Ecto-sp8_S_contig9364:3685..3793Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9364 3686..3793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9364.30843.1prot_Ecto-sp8_S_contig9364.30843.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9364 9..3793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9364.30843.1

>prot_Ecto-sp8_S_contig9364.30843.1 ID=prot_Ecto-sp8_S_contig9364.30843.1|Name=mRNA_Ecto-sp8_S_contig9364.30843.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=170bp
MKRRLHELGANPARLAACLEKDECVSLMMGSMLLSRDGLLRQKGQLPAWL
SRVRGWRWSFHFADKDAKRQWMTMEDLARTPWMMNFPGHVSSAVPPPPLL
AVRCEFHRDFTYTDAGFHQDGLVWHFEDNHRFVKVSNYPALEVERDEKSW
GWRLVNAHVTFKQERALPP*
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mRNA from alignment at Ecto-sp8_S_contig9364:3..3793+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9364.30843.1 ID=mRNA_Ecto-sp8_S_contig9364.30843.1|Name=mRNA_Ecto-sp8_S_contig9364.30843.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3791bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9364:3..3793+ (Ectocarpus species8 EcLAC_412)
AAGGCCATGAAGAGACGCCTCCACGAGCTGGGGGCGAACCCCGCCAGGCT
TGCGGCCTGCCTGGAAAAGGTGATGTGTTGCTTTCTTGCGCGATTTTTTT
CGGTTGCCTGGGATTGATGAATCACGCGCAAGACGTCACATGCGCTATGG
GGCGGAGTTGTGCCAATACAGAGCCAAGGCTTTGCATCGTCCGATTATAG
CAATCCGATAGGTTGAACTGCTGTGGAGCTTTTGTCGTCTAGCCGAACCT
TCGCGCTTGATCGGGGTCATGATCGAATGAGGACAACTGCTACATACCCA
CGCCACCAACCACACGAACGCGATACGGTTCTCACAGTCTTTTCCCGTTC
TGGTTGGAGATGTCTCTCGCTACGAAGCGGTTGTGTCGCGATGGTACGAT
CAGATTCCGTCCTGCCTTTGTTTCGATGCTGGACTAATGACAAAACCCAC
GACTTTTATTTTGCGTCATCTTTTGAATCGCCGTTCACGTTGACGGGGGG
CCACACACCCAAATAAAGATTGGCATCCTTTTAGGGCGCACGTGGACGGG
CATCCTTTTAACGACGTGTTTTTGCACCTCACGCGAGGCTTGCAAAGCTA
AGCTAAGCTAAGCGTCCACGAGGGGCTCCCGTTGGGTAGGGCTCGGACGC
GCTAGAATTCCACGTGATCACGACAACAAAAGAGTTGCGGTTCACGGGGG
AGGAGGGGTTCAATCGTGGCCTGTTCTAGATCATGTAACATCTTCCGTTG
AAACCGAGCGATTGCCTGGTGCTGTTGGTTTGTGGATTTCTGTCAGGGCG
ATAGGCAGTGTCTATTTTGCCGTTTCGGAAGGCCTTTACAAAGAAGGAAA
CGTGACGTGTGTGGAATTATTTCATGTGCTGTGTTGTGTGTGCTAGCCAC
GTCGGTGCCGGTCGAACGTGAAAGGAGCTCCACAAAAAGGAAGGCGGCGG
CAACCCCCCCTATATATAGTGCCGACCCTGAAAAAAGCAGCGTTGCGTGT
GTCCGGTTACTCGCTACGGCTGCTCTCCGCTCCGTCCGTATGCACTCTCT
CTCTCTATTCGTGCCGTGGCGTTGACACTGAAACTGCTCTTCTACCCTAC
GGGGCTTACGTGCGCCTCGCTTTCCTGCCGTGGGTTCGTCCCTCATCTTC
TGCGTACCCCCCCCCCCCCCCCCCCCCCCGGGGGGGGGGGGGGGGTGGGG
GGGGCGGGTGGGGGGGTGGGGGTGTGTGCCGGGGGGGNNNNNNNNNNAAC
CTCTCTTCTTCCCCTTGGTGGTTTTGGCGGCCCTCGTTTCCCCCGCGTGG
GTTGCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTGCGATGCGGGGCA
GGACGAGTGCGTGTCGCTGATGATGGGGTCGATGCTTCTGTCGAGGGACG
GCCTCTTGCGGCAGAAGGGACAGCTGCCGGCGTGGCTCTCGCGGGTGAGG
GGCTGGCGGTGGAGCTTCCACTTCGCCGACAAGGACGCCAAGAGGCAGTG
GATGACCATGGAGGACCTGGCAAGAACGCCCTGGATGGTGAGTGGGATGT
ACATAGCCCAATTAAGAGTTTTTGGCCTACTTTCGCCTGGGGTAGGTTTA
ATAAACTTTGAAAAGCTGGACAACCTCGATATATATTTTTTGTGTATTCG
GCTATTTATTCGGGGGTTTCTTCAAGGCAAGGCCCCATTCCCGACGTTTT
CTTTTCTGGAGTCTGGATGTGTGCATGTGCTCGCTGTCATTGATGGCCAG
AGTTGCAACACGATAGACCCGAGCCTCCAAAGGCGGACGGAGCCTTTGCA
ATGAAAGTGTTCGCGTTACGCCGGCCAGGCGAGCCAACTAGACAAGCGCC
GGGGATTACTTGTTGTCTCGTATTTGCACATGGGTTGCATTGCATGGTCT
GTCGACGCGCAAGTCTCGCATCCCTGCGTTACAAGGACGGCTGTCATGGT
CTTGCACAAGAGAGGGGGATGCCAGAGAACGACGGATGTGATGGGGGGAT
TTCGCCATCGAAAACGCGTGACGAGAGCAGCGATGACTTGTTTGTGGTAG
AGATGCAAGGAGAAGGGAGGCTTCTGCTTTTTCAACCCGACCCTGCTCTC
TTTAGGCCGTGCTCTGCAAAAAATAATCCATGGACATCGGGGGGGGGATT
TGTCTGCGGGAGAGCAAATGAGTTTGTTCAACGTGCCGGCTTGGCTGAAA
GAGAGAGGGATACAGAGAGAGGCACACACAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAACAGTAGCGA
GATAGCCCCAACATACATCACGCCGGCCAGTGTATGGGGTGCACCTTCTC
AAGATCGCTGAGCATGGCCACTGCAACCCAGAACTAACAGCGTTCGTTGT
TGGTAGGCTTATTATCGTACCACTTCTAATTTATGTGGCCGAAGAGCTGC
TACCGAAAAGTGGCGGGAGCTCCTCAAGAACAGCTGCGGACACCGACACG
CAATGGTGGCCCTCGAGAGTGGGGTGGCCGCAAGCTCGTGTCGGACCAAC
ACCAGACCACGCGCCAAACACAAGCATACGATTCGAGGGTGAAATGGTCG
AGGTAGGGTTGCCCTTGTGGAATGGGAGTTGCAAAACTGAAGGCTTCGCG
CGTCGTTGTTGGTATTCTAACCTAACCCTTACTTTTGGCAGATGAACTTT
CCGGGGCACGTGTCGTCCGCGGTGCCGCCGCCGCCGCTGCTGGCCGTCCG
CTGCGAGTTCCACCGGGACTTCACCTACACCGACGCGGGGTTCCACCAGG
ACGGGCTCGTGTGGCACTTCGAAGACAACCACCGCTTCGTCAAGGTGCGG
TGCACACCGTGGCCTATTGTTGCTGTTGTCGTTGTTGATGTTGTTGTGGA
TGATGTTGATATTGATGTGGTGTTTGCTGATTCTATGTCGTTGTGTCTTG
TTGATTTCTGTGTTGCTCTCCTTGGTGTGGTCTGTGCTCCAACATCGTTT
TCTCGTCACCGCCACCCGCACCTCCACTTCTCCAACTTCCACGTTCCGCC
CCCTGCCCTCTCCCAAAACTCTAACGACACCATATCGTACGTTTCTATGA
ACCTCTGCAATGTTTTGAGGCCCCAAACGGATTTATCCCCCGGTGGTGGG
CTTAGGTGGTTTTCACTTTGTGGCCTGTGTGGTTCGGCTCTCTCCTCCAT
TATCCCCCCTATCGATTCCGGCCTTACTGTTTTTTCTCGGGCTCTTGAAG
AAGGAAAGAATGCACTTCCCCACCGCTCGAAAGGAAAAGCCGAAGCGATT
TATGATACATGTTTGGCGCTAGCTCTATTGATGCTCTTCCCCATCCTCTG
TCCGAACAGGACGGACAAAATAACAATTCTTAAAGTAAACGACGAATGGT
ACACGCACGAACAACCAGCCATGGTTTCGTATTTTTTTTTTGACGAAGCA
GAACTCCCAGTTCTGTGTGAGTGTTTTCTGTTTTGCCCAGCAGACACTGG
TTCGCAGCAGACGCACCACTTTTCAGCGATCATTCTGACCTTCTACATAC
CAGTGCGTGAGAAACGATGCTGCTGTGCAAGTGCAACTACTGCTGTTGAG
TGCGTATTTTTCGCGCTTACAACATGAGTTGCCTTGCAACGTTTCGCTCT
TGCTCTGCCCTCTGCTACACCCCCGGAAAAAAGGTGTCGAACTACCCGGC
TCTAGAGGTGGAACGAGACGAGAAATCCTGGGGGTGGAGGCTAGTCAACG
CGCATGTCACCTTCAAGCAAGAGCGAGCGCTGCCGCCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9364:3..3793+

>mRNA_Ecto-sp8_S_contig9364.30843.1 ID=mRNA_Ecto-sp8_S_contig9364.30843.1|Name=mRNA_Ecto-sp8_S_contig9364.30843.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9364:3..3793+ (Ectocarpus species8 EcLAC_412)
ATGAAGAGACGCCTCCACGAGCTGGGGGCGAACCCCGCCAGGCTTGCGGC
CTGCCTGGAAAAGGACGAGTGCGTGTCGCTGATGATGGGGTCGATGCTTC
TGTCGAGGGACGGCCTCTTGCGGCAGAAGGGACAGCTGCCGGCGTGGCTC
TCGCGGGTGAGGGGCTGGCGGTGGAGCTTCCACTTCGCCGACAAGGACGC
CAAGAGGCAGTGGATGACCATGGAGGACCTGGCAAGAACGCCCTGGATGA
TGAACTTTCCGGGGCACGTGTCGTCCGCGGTGCCGCCGCCGCCGCTGCTG
GCCGTCCGCTGCGAGTTCCACCGGGACTTCACCTACACCGACGCGGGGTT
CCACCAGGACGGGCTCGTGTGGCACTTCGAAGACAACCACCGCTTCGTCA
AGGTGTCGAACTACCCGGCTCTAGAGGTGGAACGAGACGAGAAATCCTGG
GGGTGGAGGCTAGTCAACGCGCATGTCACCTTCAAGCAAGAGCGAGCGCT
GCCGCCGTAG
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