mRNA_Ecto-sp8_S_contig9348.30811.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9348.30811.1
Unique NamemRNA_Ecto-sp8_S_contig9348.30811.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9348.30811.1 vs. uniprot
Match: D7FPM2_ECTSI (Myst-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM2_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 1.470e-67
Identity = 173/217 (79.72%), Postives = 175/217 (80.65%), Query Frame = 3 
Query:  285 DALPNGSSTTPNGGGADGPTGKEPRVVEQQSTASAMSDAGTAGADQQSTARETAWKTPPAAASSGGEVGAGSAPLSPPEDRRSRPXXXXXSSPVKTPPLNGMAFSGALDIMALAASSRPRATTPSSXXXXXXXXXXXXXXXXXXGDDGSPASRGNGNGSCGLLQNKTTPAAGLGAALDMMASAVDARAPGALLSNGGDGVEGGQEERSTAGSR*PNC 935
            D  P  S     GGG  G  GKE  VVE       +SDAGTAGADQQS ARE AW+TP      GGEV AGSAPLSPPEDRRSRP     SSPVKTPPLNGMAFSGALDIMALAASSRPRATTPS XXXXXXXXXXXXXXXXXX DDGSPASRGNG GSCG LQNKTTPAAGLGAALDMMASAVDARAPGALLSNGGDGVEGGQEERSTAGSR  NC
Sbjct: 1404 DPSPTESGGADVGGGGGG-RGKEXXVVEXXXXXXXVSDAGTAGADQQSIAREIAWETPXXXXXXGGEVVAGSAPLSPPEDRRSRPEAGAVSSPVKTPPLNGMAFSGALDIMALAASSRPRATTPSXXXXXXXXXXXXXXXXXXXXDDGSPASRGNGKGSCGPLQNKTTPAAGLGAALDMMASAVDARAPGALLSNGGDGVEGGQEERSTAGSRQANC 1619
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BLAST of mRNA_Ecto-sp8_S_contig9348.30811.1 vs. uniprot
Match: A0A6H5JA25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA25_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 2.630e-65
Identity = 152/195 (77.95%), Postives = 155/195 (79.49%), Query Frame = 3 
Query:  339 PTGKEPRVVEQQSTASAMSDAGTAGADQQSTARETAWKTPPAAASSGGEVGAGSAPLSPPEDRRSRPXXXXXSSPVKTPPLNGMAFSGALDIMALAASSRPRATTPSSXXXXXXXXXXXXXXXXXXGDDGSPASRGNGNGSCGLLQNKTTPAAGLGAALDMMASAVDARAPGALLSNGGDGVEGGQEERSTAGSR 923
            PTGK PRVVEQ+STASA+SD GTAGADQQST RET W+TPPAAASSG E GAGSAPL PPEDRRSRP     SSPVKTP LNG  FSGALDIMALAASSRPRATTPSS                  GDDGSPASRGNGNGSC  LQNKTTPAAGLGAAL MMASAVDARAPGALLSNG   VEGGQEERS AGSR
Sbjct: 1130 PTGKIPRVVEQKSTASAVSDVGTAGADQQSTTRETTWETPPAAASSGDEDGAGSAPLFPPEDRRSRPEAGAVSSPVKTPALNG--FSGALDIMALAASSRPRATTPSSSRSPSQDRSSGA------GDDGSPASRGNGNGSCRPLQNKTTPAAGLGAALGMMASAVDARAPGALLSNG---VEGGQEERSPAGSR 1313
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9348.30811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPM2_ECTSI1.470e-6779.72Myst-related protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JA25_9PHAE2.630e-6577.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9348contigEcto-sp8_S_contig9348:1980..5023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score257.7
Seed ortholog evalue5.6e-66
Seed eggNOG ortholog2880.D7FPM2
Model size2698
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.peripheral T cell tolerance induction
EggNOG OGsCOG0553@1,KOG0383@2759
Ec32 ortholog descriptionPHD-type zinc finger protein
Ec32 orthologEc-16_001440.1
Cds size738
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145289.6606312-UTR-Ecto-sp8_S_contig9348:1979..21671681145289.6606312-UTR-Ecto-sp8_S_contig9348:1979..2167Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9348 1980..2167 +
1681145289.7084525-UTR-Ecto-sp8_S_contig9348:3223..45911681145289.7084525-UTR-Ecto-sp8_S_contig9348:3223..4591Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9348 3224..4591 +
1681145289.7197878-UTR-Ecto-sp8_S_contig9348:4619..50231681145289.7197878-UTR-Ecto-sp8_S_contig9348:4619..5023Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9348 4620..5023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145289.6816177-CDS-Ecto-sp8_S_contig9348:2167..25961681145289.6816177-CDS-Ecto-sp8_S_contig9348:2167..2596Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9348 2168..2596 +
1681145289.6938777-CDS-Ecto-sp8_S_contig9348:2914..32231681145289.6938777-CDS-Ecto-sp8_S_contig9348:2914..3223Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9348 2915..3223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9348.30811.1prot_Ecto-sp8_S_contig9348.30811.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9348 2168..3223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9348.30811.1

>prot_Ecto-sp8_S_contig9348.30811.1 ID=prot_Ecto-sp8_S_contig9348.30811.1|Name=mRNA_Ecto-sp8_S_contig9348.30811.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=246bp
MSRLGGGDDAESSSARGDASASASAAAAAAAGDALPNGSSTTPNGGGADG
PTGKEPRVVEQQSTASAMSDAGTAGADQQSTARETAWKTPPAAASSGGEV
GAGSAPLSPPEDRRSRPEAGAVSSPVKTPPLNGMAFSGALDIMALAASSR
PRATTPSSSRSPSQDRSSSSGAGAVAGDDGSPASRGNGNGSCGLLQNKTT
PAAGLGAALDMMASAVDARAPGALLSNGGDGVEGGQEERSTAGSR*
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mRNA from alignment at Ecto-sp8_S_contig9348:1980..5023+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9348.30811.1 ID=mRNA_Ecto-sp8_S_contig9348.30811.1|Name=mRNA_Ecto-sp8_S_contig9348.30811.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3044bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9348:1980..5023+ (Ectocarpus species8 EcLAC_412)
GGCGGGGGGATGACGGTGGAGTCACGATCCCCGTTGGGGAGGAGCAGACG
ACGGCGGCTGCAGTTGCGGCGGCGGCGGCGGCGGCGGCGGCAGGTGCTAG
CTCTGCTAGCGGAGATGCCGTCAAGCGTGAAGCCGGCGCCGGCGCCGGCG
CCGGCGCCTCGGGGTCACCGCCGTGTGTAAATGACGGCATGTCGCGACTG
GGTGGTGGGGACGACGCCGAATCATCGAGCGCGAGGGGCGACGCCTCCGC
CTCCGCCTCCGCTGCTGCTGCTGCTGCTGCTGGTGATGCCCTGCCCAACG
GAAGCAGCACGACTCCGAACGGCGGCGGTGCCGACGGCCCAACAGGGAAG
GAACCACGGGTGGTGGAACAGCAGTCCACCGCTTCCGCGATGAGTGATGC
CGGCACAGCGGGGGCGGATCAGCAGTCGACAGCGCGCGAGACCGCCTGGA
AGACACCCCCGGCGGCGGCCAGCAGCGGGGGTGAGGTCGGTGCCGGGTCG
GCTCCGCTTTCCCCCCCGGAGGACAGACGCTCCCGGCCGGAAGCAGGGGC
GGTGTCGTCGCCTGTTAAGACTCCCCCCTTGAATGGGATGGCGTTCAGTG
GAGCCCTCGACATTATGGTGAGAGGAAAGTTGTGTGGGGACTCGATTCAT
GGAGGGTAGGCCCCGCCCCCCGCCCCCCGCTGCTGCAGCAGCAACACATG
CACCCTGCGGCGTCGACGCTGGGAAGAACACTTTTGACCCGGGTATAATG
TGCACGGGGCGCATGGGACGGCATGAAGGCTTGTCGAATGCTCTCCGCCA
TCGAGTGTATTATATTCCGTCCGTTGTGATTGTTGGTCCGAGCCATCCTG
CAGCAGCAACGGCATCCGCACTTCGAACCCTCACGCGATGTCGACGACAA
ACAACCTTGCCCCCCTCCGTGCCCCTACCAATCAGGCTTTAGCGGCCTCC
TCTCGCCCAAGAGCGACGACCCCCTCGTCTAGCCGCTCGCCCTCTCAAGA
TCGCAGCAGCAGCAGCGGCGCCGGCGCCGTCGCCGGTGACGATGGCAGCC
CCGCTAGCCGCGGCAACGGCAACGGCAGTTGCGGGCTGCTGCAAAACAAG
ACCACTCCCGCCGCCGGCCTTGGCGCCGCTCTCGACATGATGGCGTCCGC
CGTTGATGCCCGCGCCCCGGGTGCGCTGCTCAGCAACGGGGGCGACGGGG
TCGAGGGTGGTCAGGAGGAGAGATCGACGGCCGGCTCTAGATAACCCAAT
TGTATGTAGGTTTTGGAATCGATCTGCCGCGCTCCCCCATGAGACTCCTG
GGGCTGGCTGCCACGACCATGCTTTCTTGGCTAACGTAGGCCGACGGGCC
CACGACATGGCAGCCAACCGAAGGTTGGCTGTGTTGAAGGATTATTAAAG
AGCCTGCAGCTATAATAGGTACAAGAGAGACCCACGGAAGACGGGGCTGA
TTTTCGGTTTCGTGTGTCCACAACACATGGGGAAGATATCAGCCCCTTCT
GCTGTAGAATTGAACAGTAGTGATGACCGTGAGCGTGCGCTGATTGCGGT
GTTTTTTCTGTCGCTGACGATCCGTTCGCTGAAAGAATGTGAGGAGTACA
AGACACTACTGCTGTACGGTTTTGTCCAGGTATGAAACATGCTTGCCCGC
TCGGAATGTGGGATACGGGCGTAACGTCTCATGCATACAGCACGGTGAAA
GTGTTGTTTGTTGACAGAGTAAACAGGACGTGAGGGCTGGGGGTGCACTT
GAATGGAAGCTTCTCAGCGACACAAGGTTCGTTGCGTTGCTCGTGTTCAG
TTTTTTCTTTTTTACCTTTTAGAGAGAAACATGGAAACACAGGAACCGGA
TATGGGGGTACGCTTGAGTGGGGCCCTCCGGCACAGTAGCTGTAAGTTGT
TTATTTCTAGTGGTGTTTTTTTGATGGACAGAAGCTTACAAGACAGGAAA
ACGGAGACATATGCGGGAGAGGGAGAAGGAGAGGGGGAGGCGTGAAGCAT
TTTTTCGAGAGGTTGTGTAGGTGGGCTGGTGGTGCTGTTGTGTTCTTGGA
AGGATCGAGGGATCTGGGCAGAGGACGGTCGTGGTTGCCGGGATCTCGAT
CCTGAAATTTTTGTGGACGGGGGAAGTGCGTATGTTGTGGGAGGAGTACA
CTGCCGCTCCGGGATGTACTCATCGAACACCAGTAAGAGGCTTGGGAGAA
GGAGGAACGTTGTTGACGGGATTTCGGAGGGATATATTGGAGTGCTTGTT
TGGTACCATAGGAGTACAAGCTGCCGCCTCTCCGGGATGTGTTCGTCCAA
CACCAAGAAGAGGCTTGGGAGAGGGAGGAACTTTGCTGACGGGATTTTGG
AGGGATAAGACTCGCGGCGGTAGCTATCGTTCGTCCCGTGTGTTCTCCGG
CTGGATTATTTTTGTGAGCCTCACGAGGAACGACGTCCAATGTAGAGGTG
GAGTCAAGAGTACCCTTCCTGTGCTGACCAGTTTGGGCCGGGCGGGTGGT
TCACAGGGCAAAGGAACGCGAGGTTGGACGGCTAAACAGTCAATCATGAC
ATGTTTCCCTCGCTGTGGGTGGAACGAGATGGGGAAAAGAAGGTGGAAAG
GACATCAAACGCATGACATAGCAGCATGTTGAATCATACAAGCGAGGTAA
CATTTAAAAGAAAATCGAACAAGGACTAAACACCCAAGACGAAGGATTGA
AGCCGGCCAAAGGGGTGTGTGATGTGCAACTTCAATTTCGGTGTAGGAAC
CGGTGGTGAAAATGCGTGTGTGCCTCTCTGTGCTTTAGTTCGGTCGCGAT
AGTCTGTACGTTTCCCTCCACCCAGTTTTTATTTTCTTGGAGGGTGATGG
GTGTGTCGAATTGCCACGCTTCGCAAGATGGGATTTTGACTGCCCGAGGT
TGGTCTCTCGCTCCTTGCTGTGTTGACTGGCATGCGTTGGGCAGAACATG
TGCCCATTTAAAATTAGTGTGTAAGTCTTGCGTTGCCAGTCTTCTTCTTC
AAGCCACTCGTGTGTGTTATTTCCCAACTATCCTTCACGTTTAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9348:1980..5023+

>mRNA_Ecto-sp8_S_contig9348.30811.1 ID=mRNA_Ecto-sp8_S_contig9348.30811.1|Name=mRNA_Ecto-sp8_S_contig9348.30811.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=738bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9348:1980..5023+ (Ectocarpus species8 EcLAC_412)
ATGTCGCGACTGGGTGGTGGGGACGACGCCGAATCATCGAGCGCGAGGGG
CGACGCCTCCGCCTCCGCCTCCGCTGCTGCTGCTGCTGCTGCTGGTGATG
CCCTGCCCAACGGAAGCAGCACGACTCCGAACGGCGGCGGTGCCGACGGC
CCAACAGGGAAGGAACCACGGGTGGTGGAACAGCAGTCCACCGCTTCCGC
GATGAGTGATGCCGGCACAGCGGGGGCGGATCAGCAGTCGACAGCGCGCG
AGACCGCCTGGAAGACACCCCCGGCGGCGGCCAGCAGCGGGGGTGAGGTC
GGTGCCGGGTCGGCTCCGCTTTCCCCCCCGGAGGACAGACGCTCCCGGCC
GGAAGCAGGGGCGGTGTCGTCGCCTGTTAAGACTCCCCCCTTGAATGGGA
TGGCGTTCAGTGGAGCCCTCGACATTATGGCTTTAGCGGCCTCCTCTCGC
CCAAGAGCGACGACCCCCTCGTCTAGCCGCTCGCCCTCTCAAGATCGCAG
CAGCAGCAGCGGCGCCGGCGCCGTCGCCGGTGACGATGGCAGCCCCGCTA
GCCGCGGCAACGGCAACGGCAGTTGCGGGCTGCTGCAAAACAAGACCACT
CCCGCCGCCGGCCTTGGCGCCGCTCTCGACATGATGGCGTCCGCCGTTGA
TGCCCGCGCCCCGGGTGCGCTGCTCAGCAACGGGGGCGACGGGGTCGAGG
GTGGTCAGGAGGAGAGATCGACGGCCGGCTCTAGATAA
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