mRNA_Ecto-sp8_S_contig9339.30799.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig9339.30799.1 vs. uniprot
Match: A0A6H5JFI0_9PHAE (Matrin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFI0_9PHAE) HSP 1 Score: 479 bits (1233), Expect = 1.320e-165 Identity = 324/399 (81.20%), Postives = 333/399 (83.46%), Query Frame = 1
Query: 1 MASYWVSQERYFCKYCKVWLSNHQASIRNHDQGKKHVEIVAEFFRKKREDKLKGAQSESDLKRQMEKIENAAQRAHENDLAMFGGAXXXXXXXXXSAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------PASGNPSVRAGAGKREDGAVAGREGSXXXXXXXAAWDGVFEEGGQWYLDGQTHRDKLAVDAACQFFLTSEDLWVDAVVLAVADSEQPPHDATAAGGSSAGSIATTRRIDLAYFEAGAEKETVLRGVEAAAVRLPAGEGGAWPXXXXXXXXXXXDENTGLGGWQTVSVRMVDVAAEAEARCVKKEIKKAKXXXXXXXXEREKMLVEAMDADDAMGSYDPWGTGKYKGFEVAKDV 1119
MASYWVSQERYFCKYCKVWLSNHQASIRNHDQGKKHVEIVAEFFRKKREDKLKGAQSESDLKRQME+IE AAQ AHE DLAMFGGA SAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXX PASGNPSVRAG K E+GA AGREG XXXXXX AAWDGVFEEGGQWYLDGQ HRDKLAVDAACQ+FL SE LWVDAVVLA+ADSEQPPHDATAAG +SAG +ATTRR+DLAYFEAGAEKETVLRGVEAAAVRLPAGEGGAWP XXXXDENTGLGGWQTVSVRMVDVAAEAEAR VKKE+K XXXXXXXX REKMLVEAMDADDAMGSYDPWGTGKYKGFE+A D
Sbjct: 1 MASYWVSQERYFCKYCKVWLSNHQASIRNHDQGKKHVEIVAEFFRKKREDKLKGAQSESDLKRQMERIEKAAQLAHEKDLAMFGGAGAGSGLGAGSAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATDXXXXXXXXGSXXXRXXXXXXXXXXXXXXXXRPASGNPSVRAGDVKSEEGAAAGREGXXXXXXX-AAWDGVFEEGGQWYLDGQIHRDKLAVDAACQYFLNSEGLWVDAVVLALADSEQPPHDATAAGDASAGIMATTRRLDLAYFEAGAEKETVLRGVEAAAVRLPAGEGGAWPAPREMPPXXXXDENTGLGGWQTVSVRMVDVAAEAEARRVKKEVKXXXXXXXXXXXXREKMLVEAMDADDAMGSYDPWGTGKYKGFEIANDA 398
BLAST of mRNA_Ecto-sp8_S_contig9339.30799.1 vs. uniprot
Match: A0A4D9CZ19_9STRA (U1-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZ19_9STRA) HSP 1 Score: 125 bits (314), Expect = 1.070e-28 Identity = 139/393 (35.37%), Postives = 187/393 (47.58%), Query Frame = 1
Query: 1 MASYWVSQERYFCKYCKVWLSNHQASIRNHDQGKKHVEIVAEFFRKKREDKLKGAQSESDLKRQMEKIENAAQRAHENDLAMFGGAXXXXXXXXXSAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASGNPS-VRAGAG-----KREDGAVAGREGSXXXXXXXAAWDGVFEEGGQWYLDGQTHRDKLAVDAACQFFLTSEDLWVDAVVLAVADSEQPPHDATAA------------GGSSA--GSIATTRRIDLAYFEAGAEKETVLRGVEAAAVRLPAGEG--GAWPXXXXXXXXXXXDENTGLGGWQTVSVRMVDVAAEAEAR--CVKKEIKKAKXXXXXXXXEREKMLVEAMDADDAMGSYDPWGTGKYKGFEV 1107
MA YW S ++ CK+C VW+ +++ S R H+ G +H + V EFF+ +RE K +G+ + +L +++ +IE AAQ E D AMF XXXXXXXXX XXXXXXXX P P VR G ++E+ V G A +G + G YL+G+ +L CQ ++ +D W +A+V V + P T GG A G A T+R + E + V GV + +RL GE G XXXXXX DE+TGLGGWQTVSVRMVD AE +A V+ E K+ K R +ML EAM+ +DAM SYDP G G YKG ++
Sbjct: 1 MADYWKSTPKHCCKFCNVWMDDNKTSRRLHEGGARHKQAVEEFFKAQREAKRQGSIGDGELSKELREIEKAAQAQAEKDAAMF-----------------KTSVVTTVEXXXXXXXXXRPPTFSLSSRXXXXXXXXGVRHPXXXXPHRVRGDVGGWRDVEKEEKEVNGGSEDVTGGSAAAEVEGRYTVDGVTYLEGKAVETRLVRGTPCQVWVEKDDAWREAIVSRVEVTAVPNTSLTLRKFSVILGARRPDGGKEAKEGQAAVTQREE--------EAKEVEEGVLSDRIRLVEGEHSMGGVDTLPPXXXXXXVDEDTGLGGWQTVSVRMVDEEAERKASEAAVRAESKRRKEEDAQR---RARMLAEAMEGEDAMSSYDPHGRGIYKGMDL 365
BLAST of mRNA_Ecto-sp8_S_contig9339.30799.1 vs. uniprot
Match: F0WHY0_9STRA (Uncharacterized protein AlNc14C105G6187 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WHY0_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 8.440e-12 Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query: 1 MASYWVSQERYFCKYCKVWLSNHQASIRNHDQGKKHVEIVAEFFRKKREDKLKGAQSESDLKRQMEKIENAAQRAHENDL 240
M YW S ERYFCKYC +WL S+R+H++ K+H++ + E + KR+ K+K + + DLK+Q+++IE A D+
Sbjct: 1 MTEYWKSNERYFCKYCDIWLQGDSISVRHHEKSKRHLDRIQEKLKAKRQAKVKSEREDKDLKKQLDEIERTAHARFAEDM 80
BLAST of mRNA_Ecto-sp8_S_contig9339.30799.1 vs. uniprot
Match: A0A5J5BSD2_9ASTE (Matrin-type domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BSD2_9ASTE) HSP 1 Score: 70.9 bits (172), Expect = 2.630e-10 Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 1 MASYWVSQERYFCKYCKVWLSNHQASIRNHDQGKKHVEIVAEFFRKKREDKLKGAQSESDLKRQMEKIENAAQRAHENDLAMF 249
M YWVSQ +C +CK+++SN+ ASIRNH+ G++H + V++ R+DK+ + E + R +E+IE A+R+++ D+A F
Sbjct: 1 MTEYWVSQGNKWCDFCKIFISNNPASIRNHELGQRHKDNVSKKLTTMRQDKVAKEKEEKEAARALEQIEAKAKRSYQKDVATF 83
BLAST of mRNA_Ecto-sp8_S_contig9339.30799.1 vs. uniprot
Match: A0A836CFV0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV0_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 8.820e-10 Identity = 68/224 (30.36%), Postives = 88/224 (39.29%), Query Frame = 1
Query: 637 WVDAVVLAVADSEQPPHDATAAGGSSAGSIATTRRIDLAYFEAGAEKETVLRGVEAAAVRLPAGEGGAWPXXXXXXXXXXX-------------------------------------------------------------DENTGLGGWQTVSVRMVDVAAEAEARCVKKEIKKA----KXXXXXXXXEREKMLVEAMDADDAMGSYDPWGTGKYKGFEVAK 1113
W+DA++L VA P D RR +AYF GAE ETV+ + + +R+PAGE W DENTG+G WQTV V E +AR K E+ K+ + XXXX ER+ L AM+ADDAMGSYDP GTG+YKGF++ +
Sbjct: 337 WIDALILEVALVAVPNTDIR------------LRRHKVAYFAPGAEHETVVEDIPSDRLRIPAGEDAEWTAPDDAQLINVIIESDELKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPPXXXXXXXDENTGIGRWQTVKVTTFS-QEELDARQAKAEVAKSAKQKRRAXXXXRAERDMELDLAMEADDAMGSYDPLGTGRYKGFDLER 547
BLAST of mRNA_Ecto-sp8_S_contig9339.30799.1 vs. uniprot
Match: A0A397TAV1_9GLOM (Matrin-type domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TAV1_9GLOM) HSP 1 Score: 68.9 bits (167), Expect = 8.950e-10 Identity = 30/82 (36.59%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 1 MASYWVSQERYFCKYCKVWLSNHQASIRNHDQGKKHVEIVAEFFRKKREDKLKGAQSESDLKRQMEKIENAAQRAHENDLAM 246
M+ YWVSQ++++C+YC++++++++ S H+QGKKH E V +F R R + + E KR++E+IE AA + ++ D+ +
Sbjct: 1 MSEYWVSQQKHWCQYCRIYIADNKPSRTMHEQGKKHKENVEKFLRDIRRRDHENRKEEEKTKRELERIERAAMKQYKKDIIL 82
BLAST of mRNA_Ecto-sp8_S_contig9339.30799.1 vs. uniprot
Match: UPI000C1D7CA3 (zinc finger protein ZOP1 isoform X1 n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D7CA3) HSP 1 Score: 68.9 bits (167), Expect = 1.260e-9 Identity = 32/83 (38.55%), Postives = 55/83 (66.27%), Query Frame = 1
Query: 1 MASYWVSQERYFCKYCKVWLSNHQASIRNHDQGKKHVEIVAEFFRKKREDKLKGAQSESDLKRQMEKIENAAQRAHENDLAMF 249
M +WVSQ +C +CK+++SN+ ASIRNH+ G +H + VA+ R+DK+ + + + R +E+IE A+R+++ DL +F
Sbjct: 1 MTEFWVSQGNKWCDFCKIYISNNPASIRNHELGTRHKDNVAKKLNTMRQDKVAKEKEQKEAARVLEQIEAKAKRSYQKDLEVF 83
BLAST of mRNA_Ecto-sp8_S_contig9339.30799.1 vs. uniprot
Match: Q66IB2_DANRE (Zgc:112384 protein (Fragment) n=1 Tax=Danio rerio TaxID=7955 RepID=Q66IB2_DANRE) HSP 1 Score: 68.9 bits (167), Expect = 1.370e-9 Identity = 33/85 (38.82%), Postives = 53/85 (62.35%), Query Frame = 1
Query: 1 MASYWVSQERYFCKYCKVWLSNHQASIRNHDQGKKHVEIVAEFFRKKREDKLKGAQSESDLKRQMEKIENAAQRAHENDLAMFGG 255
MA YW SQ R FC+YCK W+++++ S+ H++GK H E VA ++ R+ + A+ E + + +E+AAQ+A+E DL G
Sbjct: 1 MADYWKSQPRKFCQYCKCWIADNKPSVEFHERGKNHKENVAAKIQEIRKKSVAKAKQEKKMSKDFAAMEDAAQKAYEEDLKRLAG 85
BLAST of mRNA_Ecto-sp8_S_contig9339.30799.1 vs. uniprot
Match: A0A2P5FZ54_TREOI (U1 small nuclear ribonucleoprotein C n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5FZ54_TREOI) HSP 1 Score: 67.8 bits (164), Expect = 2.730e-9 Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query: 1 MASYWVSQERYFCKYCKVWLSNHQASIRNHDQGKKHVEIVAEFFRKKREDKLKGAQSESDLKRQMEKIENAAQRAHENDL 240
M YWVSQ +C +CK++LSN+ ASIRNH+ G++H + VA+ R++K + E + R +E+IE A+R+++ D+
Sbjct: 1 MTEYWVSQGNKWCDFCKIYLSNNPASIRNHELGQRHKDNVAKKLADMRKEKAAKEKEEKEATRLLEQIETKAKRSYQKDM 80
BLAST of mRNA_Ecto-sp8_S_contig9339.30799.1 vs. uniprot
Match: A0A2I0I759_PUNGR (zinc finger protein ZOP1 n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0I759_PUNGR) HSP 1 Score: 67.8 bits (164), Expect = 2.870e-9 Identity = 32/83 (38.55%), Postives = 55/83 (66.27%), Query Frame = 1
Query: 1 MASYWVSQERYFCKYCKVWLSNHQASIRNHDQGKKHVEIVAEFFRKKREDKLKGAQSESDLKRQMEKIENAAQRAHENDLAMF 249
M YWVSQ +C +CK+++SN+ ASIRNH+ G++H + VA+ R+DK + + + R +++IE A+R+++ D+A F
Sbjct: 1 MTEYWVSQGNKWCDFCKIFISNNPASIRNHELGQRHKDNVAKKLDDMRKDKAAKEKQQQEAARAIQQIEAKAKRSYQKDVATF 83 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9339.30799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig9339.30799.1 >prot_Ecto-sp8_S_contig9339.30799.1 ID=prot_Ecto-sp8_S_contig9339.30799.1|Name=mRNA_Ecto-sp8_S_contig9339.30799.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=373bp MASYWVSQERYFCKYCKVWLSNHQASIRNHDQGKKHVEIVAEFFRKKREDback to top mRNA from alignment at Ecto-sp8_S_contig9339:1..5794- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig9339.30799.1 ID=mRNA_Ecto-sp8_S_contig9339.30799.1|Name=mRNA_Ecto-sp8_S_contig9339.30799.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5794bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9339:1..5794- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9339:1..5794- >mRNA_Ecto-sp8_S_contig9339.30799.1 ID=mRNA_Ecto-sp8_S_contig9339.30799.1|Name=mRNA_Ecto-sp8_S_contig9339.30799.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1119bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9339:1..5794- (Ectocarpus species8 EcLAC_412)back to top |