mRNA_Ecto-sp8_S_contig9294.30740.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9294.30740.1
Unique NamemRNA_Ecto-sp8_S_contig9294.30740.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9294.30740.1 vs. uniprot
Match: D8LB94_ECTSI (Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB94_ECTSI)

HSP 1 Score: 376 bits (965), Expect = 1.060e-116
Identity = 194/216 (89.81%), Postives = 201/216 (93.06%), Query Frame = 1 
Query:    1 MGCAPSRDSSRRQEPKPCSCLCNGCYPYLCCGAPLEGQTTTAYGEGSAVPLPEGGHQSGSAEGKPVMHGSHDYHWIGGGTSGKIEAGASHKPETPAGGAAAMAHGEESKVDVNIVAPSGAAGLSAKADISAAGSXXXXXXXIDSSAIKSGEIFASTGGSSSYAPSSSINPDAAATVKVEGAEGKTPMEWSASTGDASADMSGKPPIAGGSVNTPSM 648
            MGCAPSRDSSRRQEPKPCSCLCNGCYPYLCCGAP EGQTTT+YGE SAVPLPEGGHQ+GSA  KPVMHGSHDYHWIGGGTSGKIE GA+HKPETPAGGAAAMAHGEESK+DVN+VAPSGAAGLS +A ISAAGS       IDSSAIKSGEIFASTGGSSSYAPSSSI+PDAAATVKVEGAEGKTPMEWSAS GDASADMSGKPPIAGGSVNTPSM
Sbjct:    1 MGCAPSRDSSRRQEPKPCSCLCNGCYPYLCCGAPSEGQTTTSYGESSAVPLPEGGHQAGSAGDKPVMHGSHDYHWIGGGTSGKIETGAAHKPETPAGGAAAMAHGEESKMDVNVVAPSGAAGLSTEATISAAGSAAGDSGRIDSSAIKSGEIFASTGGSSSYAPSSSIDPDAAATVKVEGAEGKTPMEWSASAGDASADMSGKPPIAGGSVNTPSM 216
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BLAST of mRNA_Ecto-sp8_S_contig9294.30740.1 vs. uniprot
Match: A0A6H5K9M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M1_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 4.030e-18
Identity = 59/86 (68.60%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:  391 AAGSXXXXXXXIDSSAIKSGEIFASTGGSSSYAPSSSINPDAAATVKVEGAEGKTPMEWSASTGDASADMSGKPPIAGGSVNTPSM 648
            AAGS       IDSSAIKSGE+FAS          SSI+PDA A+VKVEGAEG+TPMEW+AS GDASA MSGK PIAGGSVNTP M
Sbjct:   12 AAGSAAGDSGKIDSSAIKSGEMFAS----------SSIDPDATASVKVEGAEGQTPMEWTASAGDASA-MSGKLPIAGGSVNTPPM 86
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9294.30740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB94_ECTSI1.060e-11689.81Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus ... [more]
A0A6H5K9M1_9PHAE4.030e-1868.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9294contigEcto-sp8_S_contig9294:2079..7287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score377.1
Seed ortholog evalue5.8e-102
Seed eggNOG ortholog2880.D8LB94
Model size683
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.axon ensheathment
EggNOG OGs28M73@1,2QTQ3@2759
Cds size681
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145283.8543167-CDS-Ecto-sp8_S_contig9294:2078..22381681145283.8543167-CDS-Ecto-sp8_S_contig9294:2078..2238Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9294 2079..2238 +
1681145283.8683655-CDS-Ecto-sp8_S_contig9294:4466..45831681145283.8683655-CDS-Ecto-sp8_S_contig9294:4466..4583Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9294 4467..4583 +
1681145283.8801484-CDS-Ecto-sp8_S_contig9294:5690..57771681145283.8801484-CDS-Ecto-sp8_S_contig9294:5690..5777Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9294 5691..5777 +
1681145283.8939722-CDS-Ecto-sp8_S_contig9294:6970..72871681145283.8939722-CDS-Ecto-sp8_S_contig9294:6970..7287Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9294 6971..7287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9294.30740.1prot_Ecto-sp8_S_contig9294.30740.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9294 2079..7287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9294.30740.1

>prot_Ecto-sp8_S_contig9294.30740.1 ID=prot_Ecto-sp8_S_contig9294.30740.1|Name=mRNA_Ecto-sp8_S_contig9294.30740.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=227bp
MGCAPSRDSSRRQEPKPCSCLCNGCYPYLCCGAPLEGQTTTAYGEGSAVP
LPEGGHQSGSAEGKPVMHGSHDYHWIGGGTSGKIEAGASHKPETPAGGAA
AMAHGEESKVDVNIVAPSGAAGLSAKADISAAGSAAGDSGKIDSSAIKSG
EIFASTGGSSSYAPSSSINPDAAATVKVEGAEGKTPMEWSASTGDASADM
SGKPPIAGGSVNTPSMSGGVETPSMSG
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mRNA from alignment at Ecto-sp8_S_contig9294:2079..7287+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9294.30740.1 ID=mRNA_Ecto-sp8_S_contig9294.30740.1|Name=mRNA_Ecto-sp8_S_contig9294.30740.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5209bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9294:2079..7287+ (Ectocarpus species8 EcLAC_412)
ATGGGGTGCGCCCCATCGAGGGATAGCTCGAGGCGCCAGGAGCCAAAGCC
TTGTAGCTGCCTGTGCAATGGATGCTACCCTTACCTGTGCTGTGGAGCAC
CGTTGGAGGGACAGACGACGACGGCGTACGGAGAGGGCTCTGCCGTTCCC
CTGCCGGAAGGTGCGAGCCATTCGAAAACCTTGTCCTTTGGGTTTTTGTG
GACAAACGGGGAAAGATTGGATGGGTTCAAGAGTCCATCCACGCGTAACC
TCCGGCATTCACTTCCACAGAGAGCTGTTCGAAGGGCTCTATCATGTATT
CTGTTGTCCTTTCCACGCTGGTGGGTTTGCCATCGACTGCCCATCGGTAG
TACCCGTTTATCGTGTGTGACGTCCACAGCGTCAACAACAGCAGCAAGAG
AATAAAGGAGCGCGCGTGTTCCAGGACGTGTCGAGAGAGTACAACCTTGA
AGCTTTCGTTTTTCAAACAACCGAAAGGTTGCCGCGTGTAGCGACACGCT
GGCGCCGTTGAGGATGCGGACGGCTCCCGGAGTGCCCTCACATGGCACTC
CGGTCGTGGCCTCTGCCTGCCGATGCGATTGTGCAATCACAACGCCGCCA
ATGTGTGCGTCGTGCTTGGACCGAAACCACCGGTACTTGAGAAAACGAGG
TTCAATTTTCGAATTGTGATATTGTTCTGTGTGTTTCCTTGTATTTATGT
GTGAACGACACACGGTGAAAATATTCGCGAATGCGTTGGGTGGTGTGTTC
TTATTTTTGTTCTGGATATATATGTGTTGTGTTGTCGGTCGACGCAGCTG
TCCGACAGAGGCCAGATTTCTGGCTTCTTGCGACAAGCCAAGGCAACGTT
GTTTTTTGTTACGGCCACGTTGGCAAGCAGGGGGGCAAGCAAGGTGCCAT
CTGTGAAGACTTGAGAGCGGGTGGCTCGGGGCGCATCATCGGGATAGGCA
AAGGGGAGATAGCCGCTTGGGGGGGGGAGACCAAAAATATATGTCTTCTT
CCTTACACCTGCGCAGCACGTTGACTCTCTAACGTAGTAATACTTACAGT
TTCTTGGGTCGTGTTGTTGGTGCGGGCCCCTCTTTTACTGCCGTATCCAA
GAAGAAGAAAAAAACCAGACACATGCGTCTGCTACATAACCCATGATTGC
GGTTGCAAGTGAGTCCTCTCGATTTGTCCCCCTCGATGCTACGGCCGTGC
CTTAGCGTTGTGTCGGTGCAAATTCCCGCCGGGGCCGCCGGCGATCTGAA
AATGTACAACCACGTTGCATGGTGCCAAAATAGAGCCGTCGTAAATGGCA
CTTCCAGCACCAATAGGTCTGCTTGTACTGCTGTAGTGCTTGCGGAAGAG
AGGGAGAGTCGTTGTAAATAGTAATAGAAACGACCACAGACAAGGGATAT
TGCTCCTAGAGCTACAAAATTATGGGAAGCGAAGATGTTCTTATTTCCAG
GCTGAGTTGGCACAAAGTTCTACAGTGGGTCTGCGGTGCGTTCTTGCCCC
AAGGGTTGACACGTTTCTATGTGACAGGTTTGGCACGTTCGGCTCTCCCC
TCTTAATTTTTTCTGCTGGCTGCTGGCTGGTTACCATTGGAAACGGGTCG
CGGGTATTCCGTGGTACTCTTGTTTTTCTTCAATTCGTGGCGTGGAAATT
TTGAAAACTTACTACACGTTGAAACTAAACTTCCGTAAAACAGAAACCCA
TGGATATCCGTGAATATCGACTATCTGTTCATGTCACCTCCGACGGCGTC
GTTCTCCCCCACCAACTTGTTCAACTTTTGTTGTCTTTAATTTACTGTCC
AAATATATTTTTGCTGAGTACTTACTTACTGCTGTCGCGGCGGACGCCCG
TCGGTAGCAGGCAGCCTTTTCTTTTACTCAATGATACATACCATGCATTC
GGCCATTCGCCGAACAACAACAATGGAGAAAAACAACATGTAGATGATAC
AGATACAATCCATAGGGGGACCCAGACAAAACCAACACGCTCGCGATGAA
ATGTTTTTAGCCATAAAACGCAACGGTATGCGACAACGGAAATTCTGAAA
GGAGATTGATATCACAGCCCACTCCCACCTCCCACCTCCCACCTCCCACC
CGACACGCGAGGCCAGACACAAAATAACGAAAACAAGTACCTTAAATCAA
ATGCTCCCACACACAGCATCGCATGGATTCTATCTTTGTACCCCTACTAT
TTAGTCGAACGTATGATCACCATCGATTTGCACAGAAGGGCACGCCCTTT
CCCCACACATTCTGTGGGCGGCTCAAAGATCAAGGCACATGTCACGTACC
TGGGTAGGCTCCACGTTTAATTTTCCTACTATTTGCAGGGGGAGTATATA
CACTAAATTGCCCGTTAACGCCATAAATACATCTACAGGTGGACACCAAT
CGGGATCAGCAGAAGGCAAGCCGGTCATGCATGGGTCGCACGACTACCAC
TGGATCGGCGGCGGAACTTCGGGCAAGATTGAGGCGGGGGCGTCGCACAA
GCCGGGTAAGCCAAGGCGTTACCTGAGGACCCCCGGCAGCACCGGTGTAT
TTGTATACACATGGGCCTGAGAGTTGATTACTTGTTGTTTTTGAGTGTCT
CGGGTCTCGAAGCAGCCCTCTCCCGCGGCTTCCACGAAGTGGTGGAAGTG
TTGTGAGTCCCCCCCCACCCGCCCCGTGTTTGCGTACACTCTACATATAT
GATCGATTTTTGCACAACGACATGTGGCCCCCCTGCGGTGGAGGAGTGAT
CTTTGTTTTCTCCAAAGGATGGTCTACCTTTCTTTGTTCTTTTCGGGCCT
ATTGACGTTGTTTCTATGTGGTAGAAATTGCGGTGCAAGTTCAGAGGTAC
GCAGTGGTTCTTGGTTTCTATGTACAGTGCCTTGTGGTGACGAGTCCAGC
TGACCGGTTCGACCCTCCCTCCCATCTCGTCGAAAAACGGTTCTGATTGC
CGTTCATGTACAGAGGTATAAGCACACACGGAAGTGTTGAAGTAGGACGG
ATCGGCATGTCTTGGTCTGCCGGAAGGGCTCCATTCTGATGAAGGCAACA
ACACCGAATTCGAAAACAAAAACAGTTACTCTTTTTTCGAGGTTGTTTGG
TAGACGATCGTTGGATACCAGAGAAACAACCGCTGGACACCACATCGTCC
ACAGGGAAACTCCGTGTTCCAGGCCATACCGCTTGAGAACAATTCATGCC
ACGCTGTATTTTACGAAAAGGATGCACAAGCGCCCGTGGTGGGTGCACTT
CAGAACCCCGCCCGGACTTGTGTTCAAGGAAGAGACGGCGCATCTATGCA
TTGTTTGTTGGCGTAGAGAATAAATGACGAAACAAGGATGCGCGCGATCT
TGGATTGGAAAGCGGTCCAGTCAGAACAGGGGCAAAACGTGGAACATATT
CCGACCGTGTGGGCATTTTTGACGTCTTGAGGAACGGAATATTCTTTCGA
GGTGCGTAATATTTAACCAAGCTCATTTCTTCCTTGAGCCGGAATGAACC
GACCGCCATCACAGGTTCCCATTTTTCATTTCGATTTTTTTCTCTCTCGG
ACGCGGTCATCGTTGCTTTTCCGCTCGTCTGTGTGGTTCGGTTGCCGTTG
TTGTTTGACCAGAAACCCCTGCGGGCGGTGCTGCCGCGATGGCACATGGC
GAAGAGAGCAAGGTGGACGTCAACATCGTGGCTCCCAGCGGGGCTGCAGG
TGCGTGCGTCTGGGTCGCCTCCGCGCCCCCCCCCCTCCTTCTCTTTTCTT
CATCTACGGGAGTTATCTGTGTCGTTGTCTACGAGACGGCCCACCCTCGT
TTTGTCTTTATTTTATTAAACACGCGGGAAGTTGCTTCGCGCGCTTGCCA
CATCGAGTGGGCGCGTATGTCGACTGAGTGTACAGCAGTGTCGCCAAAGT
CCCGAATGTTTAAAAAAATAGGCGAGAGAGTACAGCCTTCAGCATTGCTC
GCTTATTTGCCAACTGAAGGCGAGATGCCGCGAGCGCGCCTTTGGCGAGC
AAGCTTGGTGTATGAAAGGACTCCATGAAGAGTAGTTCCAACATGATCGT
GTTCTCGATCATGCACGGCCGCGTTGTTGTAGCCGGCCGTTTTGATGACA
GAGGATATCGGGCGTTTTTGTGGCCGCTGTGTCGTCGCGCATGGTACACT
GCCCCGTCATGCGTGTCACGAGTATCCCCTTGTATGTCTGGATAGAGATG
AGGTTTCTTTTGTCTCTGTAAGAACTGAAGAGCAAAGTTTCTTCGAGCGC
AAGAAAATCTACCTCGAGGATTCTCGTAAACGTCCTTGATTCCGTGTCTG
CTTTGCCAAGAGCTATTATAGACCATCGGTGTGGATGGATACCTCGGTGA
CGTCAGCTCGGCCTTTTGTTAGAGCTCCGCAAACGAGCTGGCCGTTGGGC
ACGTAGGCGATGCATACGCTCCTGCTGCCCCTCGTGCATTGGTCGCGCCT
GCCTGTTCCGAGTGTTGAGCCGGTTGCTTTTGTGTGCAACCCCACCCGTT
ATCTTGCGCTTTTTTTCCTAGAGCCACCGCGGATGCCGACGGTCGCTCCT
CGCTTATGTCTCTCGCCAGCGCGGGTAGCAGCGTGCAGAGGCGCCGGGGT
TGGTGAACTATTTCTGGCATTTGGGGTTGGTGAACTAACTCTGCTGCTGT
CGCTTTGCTGTTGTGGCACTATTCTAGGCTGTCTCTCCTTCGCATGTACG
TGCCCAATCTTCGCACTTTCCGTGTGTGTCCCCCGTCTTCTTGCCCCTCC
TCCCCTTGTCGTTAGGCAAATCGTCTAACGACTACGGCATGCACGGTTGT
GAGCACACACCGCTCTTTCCTGACCGCCGTGTGCGGACCCCCCACCCCAC
CTCTCCCTTGCCGAATGTCTGTGGATGTATTTCGCTCTTCAGGTTTGAGC
GCCAAGGCCGACATCAGCGCGGCGGGTTCGGCCGCCGGGGACTCTGGTAA
GATCGACTCCTCGGCCATAAAGAGCGGCGAGATCTTCGCCTCCACAGGCG
GCTCGTCCTCGTACGCGCCCTCATCGAGCATCAACCCTGACGCCGCCGCC
ACCGTCAAGGTCGAGGGCGCGGAGGGAAAGACTCCCATGGAATGGAGCGC
CAGCACCGGCGACGCCTCCGCCGACATGTCGGGAAAGCCCCCCATCGCAG
GGGGCTCCGTGAACACCCCTTCCATGAGCGGAGGAGTCGAGACACCCTCC
ATGAGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9294:2079..7287+

>mRNA_Ecto-sp8_S_contig9294.30740.1 ID=mRNA_Ecto-sp8_S_contig9294.30740.1|Name=mRNA_Ecto-sp8_S_contig9294.30740.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=681bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9294:2079..7287+ (Ectocarpus species8 EcLAC_412)
ATGGGGTGCGCCCCATCGAGGGATAGCTCGAGGCGCCAGGAGCCAAAGCC
TTGTAGCTGCCTGTGCAATGGATGCTACCCTTACCTGTGCTGTGGAGCAC
CGTTGGAGGGACAGACGACGACGGCGTACGGAGAGGGCTCTGCCGTTCCC
CTGCCGGAAGGTGGACACCAATCGGGATCAGCAGAAGGCAAGCCGGTCAT
GCATGGGTCGCACGACTACCACTGGATCGGCGGCGGAACTTCGGGCAAGA
TTGAGGCGGGGGCGTCGCACAAGCCGGAAACCCCTGCGGGCGGTGCTGCC
GCGATGGCACATGGCGAAGAGAGCAAGGTGGACGTCAACATCGTGGCTCC
CAGCGGGGCTGCAGGTTTGAGCGCCAAGGCCGACATCAGCGCGGCGGGTT
CGGCCGCCGGGGACTCTGGTAAGATCGACTCCTCGGCCATAAAGAGCGGC
GAGATCTTCGCCTCCACAGGCGGCTCGTCCTCGTACGCGCCCTCATCGAG
CATCAACCCTGACGCCGCCGCCACCGTCAAGGTCGAGGGCGCGGAGGGAA
AGACTCCCATGGAATGGAGCGCCAGCACCGGCGACGCCTCCGCCGACATG
TCGGGAAAGCCCCCCATCGCAGGGGGCTCCGTGAACACCCCTTCCATGAG
CGGAGGAGTCGAGACACCCTCCATGAGCGGG
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