mRNA_Ecto-sp8_S_contig9264.30684.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9264.30684.1
Unique NamemRNA_Ecto-sp8_S_contig9264.30684.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9264.30684.1 vs. uniprot
Match: A0A6H5JJC0_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC0_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 9.460e-41
Identity = 90/106 (84.91%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 TKPTAGGPPVPASQDSSSLSSQSGKKMGFGLALGVSSKKAAGADEAAAGKGGVDADDDDGALTDLLLAAVQDVEDVVDASFVEELENASITRPMETRGDGKGKGGP 318
            TKPTAGGPPVPASQ+SSS SSQSGK MGF L LGVSSKKA GADEAAA  GGV      GALTDLLLAAVQDV+DVVDASFVEELENASITRPMETRG+GKGKGGP
Sbjct:  468 TKPTAGGPPVPASQESSSSSSQSGKTMGFALPLGVSSKKAPGADEAAARTGGVGDXXXXGALTDLLLAAVQDVKDVVDASFVEELENASITRPMETRGNGKGKGGP 573
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BLAST of mRNA_Ecto-sp8_S_contig9264.30684.1 vs. uniprot
Match: D7FMN8_ECTSI (Survivin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMN8_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 2.950e-34
Identity = 80/100 (80.00%), Postives = 82/100 (82.00%), Query Frame = 1 
Query:    1 TKPTAGGPPVPASQDSSSLSSQSGKKMGFGLALGVSSKKAAGADEAAAGKGGVDADDDDGALTDLLLAAVQDVEDVVDASFVEELENASITRPMETRGDG 300
            TKPTAGGPPV             GK MGFGLALGV SKKAAGADEAAAGKGGV  DD+DGALTDLLLAAVQDVEDVVDASFVEELENASITRPME RG+G
Sbjct:  837 TKPTAGGPPVXXXXXXXXXXXXXGKTMGFGLALGVFSKKAAGADEAAAGKGGVGDDDNDGALTDLLLAAVQDVEDVVDASFVEELENASITRPMEIRGNG 936
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9264.30684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJC0_9PHAE9.460e-4184.91UBC core domain-containing protein n=1 Tax=Ectocar... [more]
D7FMN8_ECTSI2.950e-3480.00Survivin n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9264contigEcto-sp8_S_contig9264:2347..4448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score137.1
Seed ortholog evalue6e-30
Seed eggNOG ortholog2880.D7FMN8
Model size403
KEGG koko:K10582,ko:K10586
KEGG Pathwayko04120,ko04214,ko04215,map04120,map04214,map04215
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0895@2759,KOG0897@1,KOG0897@2759
EC2.3.2.23
Cds size402
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145279.603929-CDS-Ecto-sp8_S_contig9264:2346..25471681145279.603929-CDS-Ecto-sp8_S_contig9264:2346..2547Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9264 2347..2547 +
1681145279.6194746-CDS-Ecto-sp8_S_contig9264:3814..39591681145279.6194746-CDS-Ecto-sp8_S_contig9264:3814..3959Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9264 3815..3959 +
1681145279.6313605-CDS-Ecto-sp8_S_contig9264:4392..44481681145279.6313605-CDS-Ecto-sp8_S_contig9264:4392..4448Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9264 4393..4448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9264.30684.1prot_Ecto-sp8_S_contig9264.30684.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9264 2347..4448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9264.30684.1

>prot_Ecto-sp8_S_contig9264.30684.1 ID=prot_Ecto-sp8_S_contig9264.30684.1|Name=mRNA_Ecto-sp8_S_contig9264.30684.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=134bp
TKPTAGGPPVPASQDSSSLSSQSGKKMGFGLALGVSSKKAAGADEAAAGK
GGVDADDDDGALTDLLLAAVQDVEDVVDASFVEELENASITRPMETRGDG
KGKGGPTTRSSTAAAAAGIGGSAAPARGRGSKGS
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mRNA from alignment at Ecto-sp8_S_contig9264:2347..4448+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9264.30684.1 ID=mRNA_Ecto-sp8_S_contig9264.30684.1|Name=mRNA_Ecto-sp8_S_contig9264.30684.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2102bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9264:2347..4448+ (Ectocarpus species8 EcLAC_412)
ACCAAGCCAACGGCTGGAGGACCGCCGGTCCCGGCAAGTCAAGATTCTTC
TTCCTTGTCTTCCCAGTCGGGGAAAAAGATGGGCTTTGGTCTCGCTCTCG
GTGTGTCCTCGAAGAAGGCCGCCGGCGCTGATGAGGCCGCCGCCGGCAAG
GGCGGTGTTGACGCCGATGACGACGATGGGGCCCTCACCGACCTGCTTCT
TGTGAGTGATGTTGGTGTTGGTGGTGGTGGTGGTGGTGGACGTGCGTCGT
AGGAGTTGTTGTTGTTGTTTGTTGATGATGTTTGTTGTCGTCATAGTTGG
TGGTGGATGTGCTTCTTGTGAGGTATTTTATGTTGACGTTGATGGCTAGT
TGTTGTTGTTGTTGTTGTTGTTGTTAATGTGATGGTGGGTGGGTGTGCTT
CCCATATGTTCTTGTTGTTGATGGTGGTGTGGATGGCCGCCTTTGTTGGC
TGTTGTGCGTGGTGGCGTAATAGTGGAGTGTTTTGTGTGCAGGTTGTGGG
TGGTCGTTAACGAATCGTCGTGTGTGTGTGTGCCCGCCCTCCAATAACCG
AAACCATGTTGAATGTTTAGTATCAACCACAACAAGCGTGCTACATTTCG
CAACCCCGTGCATCCACATTTAGATCACCCTCCATGAGCCCCATTCGCCT
TACTCGTGCGTGACGAGCACATATACACCGATCCCTGCACCCGGGGTGCA
TACACGAGCCCCCCCCAGAGCGTGCATAATATACGCACCCTTCCATGCGA
CTTCTCTTGCCGAACATGAGGAGCTCGGTTCGTCCACGCCTTAGACAATA
GACGCCTCAACCCGCTTTGCAGCCAGTCTTTTGCATACCGTAAGGTGATG
TAGGGTTTGACACCCCCCCCTGAAGCGTTTTTCAAAGCCCGAATTATCCA
CAGCAGAATGGGTGGCGGCGTCGAAAAAATGTCGGCGTTTGGGGTCCACC
GCCTCGTGCGATACATTTCCGAAAGCGTACCGTTTGGCTCATACATGCTC
TTCGTCATGGAGTTACCCTAAGCACGCGAGAGAACGCACGGGGGTGTCAA
CATTTTCGTAGTGCGAGATCTCCACAAATAGGGGGGTACCACTGCCGACC
AGGGTGGTTTTGGAAACTTCACGTCGGGGGCTTGCCTGAGAGGTATCGAT
CGGTTGGTGTGGTGTTCGCACCCTCCTGGTTGTGGAGCAATCATCAAGCT
TTGAAAAACGCTACATTACTCCCCCCGTGCATCCTCTCGCATCCTGACGG
TAATGGAGCTTTGAACGTCGGTCCGGGGGGGGGGGGGGGGGGGGGGGGGG
TGATATCTTCCGTTCACCACGGTACCACAATTCCTCCCCCTTTCCCTTTG
TACGACAAACGTGACTTTCGAGCAAACAACCCGCCCCTTGTTGTGCGCAC
GAAAAGGCAACGGCGATGGTCCAATCCCCGTTCCATCCCATATCCCATCT
CTACCGTACCGTGGAAAGGCCGCTGTCCAAGACGTAGAGGACGTGGTGGA
CGCTTCGTTCGTGGAAGAGCTCGAGAACGCCTCCATCACCAGACCCATGG
AAACCAGGGGGGACGGGAAGGGCAAGGGGGGGCCGACGACGCGATCGTCT
ACGGCGGCAGCAGGTAGATGCGGGCGGTGGTTTTAAATGGGTGGATAGAA
GCTCTGCCGGGGTGCTTGCTTTTTTTTTTCTGGGGGTGCGGGAGAGAGCA
TCCGTCTCTTGTGTGTCTGGAGAGTCGTTGCTGCTGTTGCCGTTGATCTT
GTTGTTGCGGTTGCTGCTCTTGTTGGTGTTGGTGTTGTAGCCGCTTCTGC
CTGTTCTCGTTGTTATTGTTGTTGTGTCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTACTGCTAGTGTTGCGCTTGTTTATTGCGGTGT
TTGTTGTTGCTGCTACTTTTGTTGTCGAACCAAAGGCTAGCTCATGCCAA
ACATTCCCCTCCTGCGGCCTTCATCGCACGCAAGCCCCACCACCCTTCTC
CCTTCTCCCCGAACCAAACCGTGCGTGCCGTACGCTCGCCGAGCAGCAGC
TGGGATTGGCGGATCAGCGGCACCGGCAAGAGGCCGAGGCAGCAAAGGGA
GT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9264:2347..4448+

>mRNA_Ecto-sp8_S_contig9264.30684.1 ID=mRNA_Ecto-sp8_S_contig9264.30684.1|Name=mRNA_Ecto-sp8_S_contig9264.30684.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9264:2347..4448+ (Ectocarpus species8 EcLAC_412)
ACCAAGCCAACGGCTGGAGGACCGCCGGTCCCGGCAAGTCAAGATTCTTC
TTCCTTGTCTTCCCAGTCGGGGAAAAAGATGGGCTTTGGTCTCGCTCTCG
GTGTGTCCTCGAAGAAGGCCGCCGGCGCTGATGAGGCCGCCGCCGGCAAG
GGCGGTGTTGACGCCGATGACGACGATGGGGCCCTCACCGACCTGCTTCT
TGCCGCTGTCCAAGACGTAGAGGACGTGGTGGACGCTTCGTTCGTGGAAG
AGCTCGAGAACGCCTCCATCACCAGACCCATGGAAACCAGGGGGGACGGG
AAGGGCAAGGGGGGGCCGACGACGCGATCGTCTACGGCGGCAGCAGCAGC
TGGGATTGGCGGATCAGCGGCACCGGCAAGAGGCCGAGGCAGCAAAGGGA
GT
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