mRNA_Ecto-sp8_S_contig9250.30663.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9250.30663.1
Unique NamemRNA_Ecto-sp8_S_contig9250.30663.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9250.30663.1 vs. uniprot
Match: A0A6H5KFK9_9PHAE (HELP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK9_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 2.970e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 TCLAMHPDKAHMATGQEGSCPIVLVWDSASRPLKTKARLQLGDDKKGVSQVCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKALSMCFSLNSDE 309
            TCLAMHPDKAH+ATGQEGSCPIVLVWDSASRPLKTKARLQLGDDKKGVSQVCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKALSMCFSLNSDE
Sbjct:  396 TCLAMHPDKAHVATGQEGSCPIVLVWDSASRPLKTKARLQLGDDKKGVSQVCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKALSMCFSLNSDE 498
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BLAST of mRNA_Ecto-sp8_S_contig9250.30663.1 vs. uniprot
Match: D7G0Y1_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y1_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 7.100e-62
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 1 
Query:    1 TCLAMHPDKAHMATGQEGSCPIVLVWDSASRPLKTKARLQLGDDKKGVSQVCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKALSMCFSLNSDE 309
            TCLAMHPDKAH+ATGQEGSCPIVLVWDSASRPLKTKARLQLGDDKKGVSQVCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKALSMCFS NSDE
Sbjct: 1282 TCLAMHPDKAHVATGQEGSCPIVLVWDSASRPLKTKARLQLGDDKKGVSQVCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKALSMCFSFNSDE 1384
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BLAST of mRNA_Ecto-sp8_S_contig9250.30663.1 vs. uniprot
Match: A0A7S2C9J2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9J2_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.510e-13
Identity = 40/102 (39.22%), Postives = 55/102 (53.92%), Query Frame = 1 
Query:    1 TCLAMHPDKAHMATGQEGSCPIVLVWDSASRP----LKTKARLQLGDDKKGVSQVCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKALSMCFS 294
            TCLA HP +  +ATGQ+G+ P +L+WD  + P    L T  R   G  ++ VSQ+ F   GK L     D  HTV V  WE+  +RC A    +K L + F+
Sbjct:   29 TCLAKHPSRTLVATGQQGAVPSILIWDYEANPDGGNLPT-VRSITGVHRRAVSQMAFDESGKYLVSVGTDTYHTVAVLDWENQTVRCSATSCSEKTLCVGFT 129
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BLAST of mRNA_Ecto-sp8_S_contig9250.30663.1 vs. uniprot
Match: UPI001CB876F8 (echinoderm microtubule-associated protein-like 6 isoform X5 n=1 Tax=Chiloscyllium plagiosum TaxID=36176 RepID=UPI001CB876F8)

HSP 1 Score: 63.5 bits (153), Expect = 1.550e-9
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:    4 CLAMHPDKAHMATGQEGSCPIVLVWDSASRPLKTKARLQLGDDKKGVSQVCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQAR 258
            CLA+HP K ++ATGQ G  P + VWD+ +  LK  + L+ G  ++GV  + FSSDGK L     D  HT++V+ W+ G  +  +R
Sbjct:  731 CLAIHPVKDYVATGQVGRDPSIHVWDTQT--LKCLSLLK-GQHQRGVCALDFSSDGKNLVSVGLDDNHTIVVWDWKKGERQATSR 812
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BLAST of mRNA_Ecto-sp8_S_contig9250.30663.1 vs. uniprot
Match: A0A401SDJ0_CHIPU (Uncharacterized protein n=5 Tax=Chiloscyllium TaxID=34767 RepID=A0A401SDJ0_CHIPU)

HSP 1 Score: 63.5 bits (153), Expect = 1.570e-9
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:    4 CLAMHPDKAHMATGQEGSCPIVLVWDSASRPLKTKARLQLGDDKKGVSQVCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQAR 258
            CLA+HP K ++ATGQ G  P + VWD+ +  LK  + L+ G  ++GV  + FSSDGK L     D  HT++V+ W+ G  +  +R
Sbjct:  731 CLAIHPVKDYVATGQVGRDPSIHVWDTQT--LKCLSLLK-GQHQRGVCALDFSSDGKNLVSVGLDDNHTIVVWDWKKGERQATSR 812
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BLAST of mRNA_Ecto-sp8_S_contig9250.30663.1 vs. uniprot
Match: UPI0014258197 (echinoderm microtubule-associated protein-like 6 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014258197)

HSP 1 Score: 63.5 bits (153), Expect = 1.570e-9
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:    4 CLAMHPDKAHMATGQEGSCPIVLVWDSASRPLKTKARLQLGDDKKGVSQVCFSSDGKLLAVACEDKGHTVMVFRWESG 237
            CLA+HP K  +ATGQ G  P + +WD  S  LKT + ++ G  ++GV  V FS DGK LA    D  H+++V+ W+ G
Sbjct:  730 CLAIHPHKDIIATGQVGRDPTIHIWDCES--LKTLSIMK-GQHQRGVCAVDFSGDGKKLASVGLDDNHSIVVWDWKKG 804
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BLAST of mRNA_Ecto-sp8_S_contig9250.30663.1 vs. uniprot
Match: UPI00140338E2 (echinoderm microtubule-associated protein-like 6 isoform X1 n=6 Tax=Petromyzon marinus TaxID=7757 RepID=UPI00140338E2)

HSP 1 Score: 63.5 bits (153), Expect = 1.570e-9
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:    4 CLAMHPDKAHMATGQEGSCPIVLVWDSAS-RPLKTKARLQLGDDKKGVSQVCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKALSMCFSLNSDE 309
            CLA+HP K ++ATGQ G    V VWD+ + RPL        G+ ++GV  V FS+DGK L     D  HT++V+ W+ G     AR   +K     F+ ++ E
Sbjct:  804 CLAIHPAKDYIATGQVGRDAAVHVWDTETLRPLAVLK----GEHRRGVCAVEFSADGKRLVSVGLDDAHTIVVWEWKRGEKIASARGHKEKIFVARFNPHNAE 902
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BLAST of mRNA_Ecto-sp8_S_contig9250.30663.1 vs. uniprot
Match: UPI00101AA27C (echinoderm microtubule-associated protein-like 5 isoform X1 n=7 Tax=Vespertilionidae TaxID=9431 RepID=UPI00101AA27C)

HSP 1 Score: 63.2 bits (152), Expect = 2.140e-9
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:    4 CLAMHPDKAHMATGQEGSCPIVLVWDSAS-RPLKTKARLQLGDDKKGVSQVCFSSDGKLLAVACEDKGHTVMVFRWESG 237
            CLA+HP K ++ATGQ G  P V +WD+ + +PL     +  G  + GV  V FS+DGK LA    D+ HTV+++ W+ G
Sbjct:  732 CLAIHPSKDYVATGQVGRDPSVHIWDTETIKPLS----ILKGYHQYGVCAVDFSADGKRLASVGIDESHTVVLWDWKKG 806
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BLAST of mRNA_Ecto-sp8_S_contig9250.30663.1 vs. uniprot
Match: A0A401NU66_SCYTO (HELP domain-containing protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401NU66_SCYTO)

HSP 1 Score: 62.8 bits (151), Expect = 2.790e-9
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:    4 CLAMHPDKAHMATGQEGSCPIVLVWDSASRPLKTKARLQLGDDKKGVSQVCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQAR 258
            CLA+HP K ++ATGQ G  P + VWD+ +  LK  + L+ G  ++GV  + FSSDGK L     D  HT++V+ W+ G  +  +R
Sbjct:  123 CLAIHPIKDYVATGQVGRDPSIHVWDTQT--LKCLSLLK-GQHQRGVCALDFSSDGKNLVSIGLDDNHTIVVWDWKRGERQATSR 204
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9250.30663.1 vs. uniprot
Match: UPI0009A31D5E (echinoderm microtubule-associated protein-like 6 n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A31D5E)

HSP 1 Score: 62.8 bits (151), Expect = 2.820e-9
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:    4 CLAMHPDKAHMATGQEGSCPIVLVWDSASRPLKTKARLQLGDDKKGVSQVCFSSDGKLLAVACEDKGHTVMVFRWESGLLRCQAR 258
            CLA+HP K ++ATGQ G  P + +WD+ +  LK  + L+ G  ++GV  + FSSDGK L     D  HT++V+ W+ G  +  +R
Sbjct:  494 CLAIHPVKDYVATGQVGRDPSIHIWDTQT--LKCLSLLK-GQHQRGVCALDFSSDGKSLVSVGLDDQHTIVVWDWKKGERQATSR 575
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9250.30663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFK9_9PHAE2.970e-6399.03HELP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G0Y1_ECTSI7.100e-6298.06N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A7S2C9J2_9STRA5.510e-1339.22Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
UPI001CB876F81.550e-941.18echinoderm microtubule-associated protein-like 6 i... [more]
A0A401SDJ0_CHIPU1.570e-941.18Uncharacterized protein n=5 Tax=Chiloscyllium TaxI... [more]
UPI00142581971.570e-943.59echinoderm microtubule-associated protein-like 6 n... [more]
UPI00140338E21.570e-937.86echinoderm microtubule-associated protein-like 6 i... [more]
UPI00101AA27C2.140e-943.04echinoderm microtubule-associated protein-like 5 i... [more]
A0A401NU66_SCYTO2.790e-941.18HELP domain-containing protein (Fragment) n=1 Tax=... [more]
UPI0009A31D5E2.820e-940.00echinoderm microtubule-associated protein-like 6 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9250contigEcto-sp8_S_contig9250:2838..4195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score204.5
Seed ortholog evalue2.2e-50
Seed eggNOG ortholog2880.D7G0Y1
Model size310
KEGG koko:K18595,ko:K18598
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.microtubule binding
EggNOG OGsCOG2319@1,KOG2106@2759
Cds size297
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145278.2023447-UTR-Ecto-sp8_S_contig9250:2837..28491681145278.2023447-UTR-Ecto-sp8_S_contig9250:2837..2849Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9250 2838..2849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145278.2166321-CDS-Ecto-sp8_S_contig9250:2849..29871681145278.2166321-CDS-Ecto-sp8_S_contig9250:2849..2987Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9250 2850..2987 +
1681145278.2287588-CDS-Ecto-sp8_S_contig9250:3825..39201681145278.2287588-CDS-Ecto-sp8_S_contig9250:3825..3920Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9250 3826..3920 +
1681145278.2458699-CDS-Ecto-sp8_S_contig9250:4131..41951681145278.2458699-CDS-Ecto-sp8_S_contig9250:4131..4195Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9250 4132..4195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9250.30663.1prot_Ecto-sp8_S_contig9250.30663.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9250 2850..4195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9250.30663.1

>prot_Ecto-sp8_S_contig9250.30663.1 ID=prot_Ecto-sp8_S_contig9250.30663.1|Name=mRNA_Ecto-sp8_S_contig9250.30663.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=99bp
MHPDKAHMATGQEGSCPIVLVWDSASRPLKTKARLQLGDDKKGVSQVCFS
SDGKLLAVACEDKGHTVMVFRWESGLLRCQARLGVKKALSMCFSLNSDE
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mRNA from alignment at Ecto-sp8_S_contig9250:2838..4195+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9250.30663.1 ID=mRNA_Ecto-sp8_S_contig9250.30663.1|Name=mRNA_Ecto-sp8_S_contig9250.30663.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1358bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9250:2838..4195+ (Ectocarpus species8 EcLAC_412)
ACCTGCTTGGCGATGCACCCGGACAAAGCCCACATGGCGACGGGACAGGA
GGGCTCCTGTCCAATTGTCTTGGTGTGGGACTCGGCGAGTAGACCTTTGA
AGACCAAGGCGCGGTTGCAGTTGGGTGACGACAAGAAAGGAGTATCGCAG
GTACGAGCCTGCACTTTTATTTATGTTTCATGCTGAGGATGAACTCGTGT
GAAAGTCTTTGGAACGAAGAGTAGTTTGCGCAAGACATCGGTGGCTGAGT
CCTCACTCGTAACGTTCTCTCCACCCCCCTACCTTCCAAAGAAGAGGGGT
GGGTGGGCGGGAGAAAAACCACGACATGTTTGATATCTTGGTCCGAATTT
CGATGTAGCCATCTGCTGACCTCCTATGCCGCGTGACCCTCCAGAGCAGA
CTGTGTGCTACCAGTGTGCACACTTTGTATTCCTCACCACGTGACCCTTG
GGTTCAGTGGACACGCGTCCATCAAGCTCTTGCTGCAGGAGCAGCGATGC
AGCAGAATGAGAACTCCCATGATATATATAGATATTTTTTCTATCACACA
ACGATCCATCTCTTCCATAGACAAGCGTCTAAGAAATATTAGCAATGAAT
TCATTCATATTGTCAGCGGAATTAGCTGTTGCTTCTCTGTTTGGGACTCC
AGAAAACAGAACCAAGACATCCGAACCAACACGCCTCCAGGCCGGCACAA
CAAGGACTCAAATGCATTCAAAGATCTGGGAGATGTTCCGAGTTCTTTCG
TGCACATTAAACTACAGCATTCGGTCTTCGACAACAAACTTTCACATACA
AGGATGTTTGGGAAGGCGAAATCACGTGTCGGTGCTGAGCGTTTCGACAT
AAAAGACCTGAAGATGATGCCACGCACCCAGTTGCTTCATTCCTAGTCTC
AACGAGCAAATTGCTCCTTCCAAGGTTGAATGGCTGCAGTAGTTCCATCA
TAACCCCGTCGCTGGACAACATTGTCGATGGTCCTCAGGTGTGCTTCAGC
TCCGATGGGAAGCTGCTGGCTGTAGCGTGCGAGGACAAGGGCCACACGGT
CATGGTGTTCCGCTGGGAGTCCGGCCTTCTCCGGTAAGTTGGAGAATATC
TAGAGGAACACGTCGAATACACTCGGACTACAAAGTTTTCATTGATGTGG
TAATATCTCACTTGTAAAGTTTGTTTGCGCCCATGAGGATTCCAGAGCAC
ATAAGCCCTCGTTTACCAACACTTTCGCAAACAGCATATATTCAACCAAG
TGTTCACTCGCAATGAACTGCGTTTCGCGTGTTGCCGCCAACAGGTGCCA
GGCCAGGTTGGGGGTGAAGAAGGCGTTGTCGATGTGCTTCAGTCTCAACT
CCGACGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9250:2838..4195+

>mRNA_Ecto-sp8_S_contig9250.30663.1 ID=mRNA_Ecto-sp8_S_contig9250.30663.1|Name=mRNA_Ecto-sp8_S_contig9250.30663.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9250:2838..4195+ (Ectocarpus species8 EcLAC_412)
ATGCACCCGGACAAAGCCCACATGGCGACGGGACAGGAGGGCTCCTGTCC
AATTGTCTTGGTGTGGGACTCGGCGAGTAGACCTTTGAAGACCAAGGCGC
GGTTGCAGTTGGGTGACGACAAGAAAGGAGTATCGCAGGTGTGCTTCAGC
TCCGATGGGAAGCTGCTGGCTGTAGCGTGCGAGGACAAGGGCCACACGGT
CATGGTGTTCCGCTGGGAGTCCGGCCTTCTCCGGTGCCAGGCCAGGTTGG
GGGTGAAGAAGGCGTTGTCGATGTGCTTCAGTCTCAACTCCGACGAG
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