mRNA_Ecto-sp8_S_contig9217.30600.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9217.30600.1
Unique NamemRNA_Ecto-sp8_S_contig9217.30600.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9217.30600.1 vs. uniprot
Match: D7FWK1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK1_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.610e-25
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 2 
Query:  353 MSHGGRRSGGGGPRISYTSRSAPIPINREKRGGGGPSPRRHPAAQEPEPHSAYPDLAD 526
            MSHGGRRSGGGGPRISYTSRSAPIPIN EKRGGGGPSPRRHPA QEPEP SAYPDLAD
Sbjct:    1 MSHGGRRSGGGGPRISYTSRSAPIPINPEKRGGGGPSPRRHPAVQEPEPQSAYPDLAD 58
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9217.30600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWK1_ECTSI1.610e-2594.83LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9217contigEcto-sp8_S_contig9217:119..1156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score115.5
Seed ortholog evalue8e-24
Seed eggNOG ortholog2880.D7FWK1
Preferred namePKD1
Model size528
KEGG koko:K04985,ko:K10348,ko:K10641
KEGG TC1.A.5.1.1
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000075,GO:0000076,GO:0000151,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0022402,GO:0031461,GO:0031462,GO:0031570,GO:0032991,GO:0033314,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902749,GO:1902750,GO:1903047,GO:1990234
Exons2
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
EC2.3.2.27
Cds size174
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04040,ko04091,ko04121,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145273.9904678-CDS-Ecto-sp8_S_contig9217:118..2051681145273.9904678-CDS-Ecto-sp8_S_contig9217:118..205Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9217 119..205 -
1681145274.0058296-CDS-Ecto-sp8_S_contig9217:717..8041681145274.0058296-CDS-Ecto-sp8_S_contig9217:717..804Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9217 718..804 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145274.022974-UTR-Ecto-sp8_S_contig9217:804..11561681145274.022974-UTR-Ecto-sp8_S_contig9217:804..1156Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9217 805..1156 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9217.30600.1prot_Ecto-sp8_S_contig9217.30600.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9217 119..804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9217.30600.1

>prot_Ecto-sp8_S_contig9217.30600.1 ID=prot_Ecto-sp8_S_contig9217.30600.1|Name=mRNA_Ecto-sp8_S_contig9217.30600.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=58bp
MSHGGRRSGGGGPRISYTSRSAPIPINREKRGGGGPSPRRHPAAQEPEPH
SAYPDLAD
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mRNA from alignment at Ecto-sp8_S_contig9217:119..1156-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9217.30600.1 ID=mRNA_Ecto-sp8_S_contig9217.30600.1|Name=mRNA_Ecto-sp8_S_contig9217.30600.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1038bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9217:119..1156- (Ectocarpus species8 EcLAC_412)
GGAGGCGATACAGCAGTAGCGCGCCCAACACGTGTTTTTTTTTCTCCCAC
GAAGGAGGCTGGAGGAGGACGAGTGACGAGAGCATGAAGCCTTGGTTTTA
ACACTGACCATTTTTGCTGACAATTTACGGCGGGAATAGTGTGCTGTCTC
TCACCCTGGTTGGAGGATAATCGGTGACAGTTTACGGGGGGGAACTGTGC
TGACTCACACGTGACATATTCTGGTGGCGGCATAACTCGGCTCCAGTCAC
GAACAAGAGAGGGGGTGCCGGTCCGGCGGTTGGGCGCGGCGGTCACCAGC
GCCGAGACCAACCCCGTGTACGCAGCAGCAGCAGCGAAAGAGGAATAAAT
AAATGTCGCACGGCGGCAGGCGGAGTGGCGGAGGAGGCCCGCGCATCAGC
TACACCTCCAGAAGCGCTCCCATTCCCATCAACCGTGAGGTGAGGCAAGC
CTGTTTGGTGCTTTCGTGTGTGATTGTCTTTTGTTTCACTCTATATTCGC
AAAAAGTATACTCTTAATATTTTCCTGTGGTTGAGCGGAGGCGTTTGGTT
GGTTGTTTGCTCCCCATTTTTCGGATCCATGGTGGGTATGCCTGGGCAGA
TGCGGATGCCCAGAGCAGCCACGTGTGCCTTAAGACACACAGCGGGTGTG
CGTTTTGTTTTTAGGCCTCCGATCGACCCTCAATTATTCGTGTGGAATTA
ATTCACTTGTAGCTCGCCGAAATTTCGCCCCTCAACTCTGTGTCAAAGTA
CAATTACTTTCTCTGTTAAACTCTCGCCGAAAACCCTGAGCATCTAGCCG
CTTTTTCGGACGCCACTGAGTGTATCGTGCGCAGACCCCAGAGAGTCGTT
CCCCAAGTGATCTGCAGGAGAAGAAAGGCCTGTGCAACCTTGCATGCAGC
TAGCAACAATTCCCTCCCATCCTTTTCTCGTCCATTTTTGTTTTTTCCAA
GAAGCGTGGTGGCGGCGGGCCTTCCCCAAGAAGACACCCGGCCGCCCAGG
AGCCGGAACCACACTCGGCCTACCCCGACCTCGCCGAT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9217:119..1156-

>mRNA_Ecto-sp8_S_contig9217.30600.1 ID=mRNA_Ecto-sp8_S_contig9217.30600.1|Name=mRNA_Ecto-sp8_S_contig9217.30600.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9217:119..1156- (Ectocarpus species8 EcLAC_412)
ATGTCGCACGGCGGCAGGCGGAGTGGCGGAGGAGGCCCGCGCATCAGCTA
CACCTCCAGAAGCGCTCCCATTCCCATCAACCGTGAGAAGCGTGGTGGCG
GCGGGCCTTCCCCAAGAAGACACCCGGCCGCCCAGGAGCCGGAACCACAC
TCGGCCTACCCCGACCTCGCCGAT
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