mRNA_Ecto-sp8_S_contig921.30586.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig921.30586.1
Unique NamemRNA_Ecto-sp8_S_contig921.30586.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig921.30586.1 vs. uniprot
Match: A0A6H5KJM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM5_9PHAE)

HSP 1 Score: 742 bits (1915), Expect = 1.290e-261
Identity = 380/410 (92.68%), Postives = 393/410 (95.85%), Query Frame = 1 
Query:   97 MSAELSQPDFDPDGTAATSTASEDQRNYRAAYLKKQARRGMKHAAAFLSLGLFLEIGATFWTLAQAIASGVFDEADCGVRALSLYHNERLPSNCQQLDSSVVWFDEDRTVSTFTSCSGLDDPAIDQLCDCAKYNKVSTGCTWTSASSTRDEIEGLCVAVPVIALTADLQEEYGTTYDWLLDSSELEYQDDCRPLSPEGFEDITIALLVVSLSLELVEAYVGYKRWRDPLSVRGLVVVASVLEGVGLFSIWCLLRFLPGGILETEVSENQYKFLNIMLYGVLVVTFGGTLAEIVYYFSAPGRFRYLSVFGNSLTWLASALTEVLVTAYLVWRLQWWENAEDETADEETWPVLVAAVVGLVVLEVAALLVLWIARVLIARAKSALLTAKDLSLKEPCSGAANGSGAASHKEI 1326
            MSAE SQPDFD DGTAAT T SE +RN+RAA LKKQA RGMKHAAAFLSLGLFLEIGATFWTLAQAIASGVFDEADCGVRALSLYHN+RLPSNC+QLDSSVVWFDEDRTVSTFTSCSGL+DP IDQLCDCA+Y++VSTGCTWTSASSTRDEIEGLCVAVPVIALT+DLQEEYGTTYDWLLDSSELEYQDDCRPLSPEGF DITIALLVVSLSLELVEAYVGYKRWR+PLSVRGLVVVASVLEGVGLFSIWCLLRFLPGGILETEVSENQYKFLNIMLYGVLVVTFGGTLAEIV+YFSAPGRFRYL V GNSLTWLASALTEV+VTAYLVWRLQWWENA DETADEETWPVLVAAV+GLVVLEVAALLVLWIARVLIARA SALLTAKDLSL EPC G ANG GAASHKEI
Sbjct:    1 MSAESSQPDFDADGTAATGTVSEGKRNHRAACLKKQAIRGMKHAAAFLSLGLFLEIGATFWTLAQAIASGVFDEADCGVRALSLYHNDRLPSNCEQLDSSVVWFDEDRTVSTFTSCSGLEDPPIDQLCDCARYDRVSTGCTWTSASSTRDEIEGLCVAVPVIALTSDLQEEYGTTYDWLLDSSELEYQDDCRPLSPEGFGDITIALLVVSLSLELVEAYVGYKRWRNPLSVRGLVVVASVLEGVGLFSIWCLLRFLPGGILETEVSENQYKFLNIMLYGVLVVTFGGTLAEIVFYFSAPGRFRYLGVLGNSLTWLASALTEVVVTAYLVWRLQWWENA-DETADEETWPVLVAAVIGLVVLEVAALLVLWIARVLIARATSALLTAKDLSLGEPCRGMANGGGAASHKEI 409
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig921.30586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJM5_9PHAE1.290e-26192.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig921contigEcto-sp8_S_contig921:5016..9401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2656
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_000650.1
Cds size1233
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145272.8666139-UTR-Ecto-sp8_S_contig921:5015..51111681145272.8666139-UTR-Ecto-sp8_S_contig921:5015..5111Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig921 5016..5111 +
1681145272.9025893-UTR-Ecto-sp8_S_contig921:8074..94011681145272.9025893-UTR-Ecto-sp8_S_contig921:8074..9401Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig921 8075..9401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145272.8785973-CDS-Ecto-sp8_S_contig921:5111..51241681145272.8785973-CDS-Ecto-sp8_S_contig921:5111..5124Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig921 5112..5124 +
1681145272.890636-CDS-Ecto-sp8_S_contig921:6854..80741681145272.890636-CDS-Ecto-sp8_S_contig921:6854..8074Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig921 6855..8074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig921.30586.1prot_Ecto-sp8_S_contig921.30586.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig921 5112..8074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig921.30586.1

>prot_Ecto-sp8_S_contig921.30586.1 ID=prot_Ecto-sp8_S_contig921.30586.1|Name=mRNA_Ecto-sp8_S_contig921.30586.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=411bp
MSAELSQPDFDPDGTAATSTASEDQRNYRAAYLKKQARRGMKHAAAFLSL
GLFLEIGATFWTLAQAIASGVFDEADCGVRALSLYHNERLPSNCQQLDSS
VVWFDEDRTVSTFTSCSGLDDPAIDQLCDCAKYNKVSTGCTWTSASSTRD
EIEGLCVAVPVIALTADLQEEYGTTYDWLLDSSELEYQDDCRPLSPEGFE
DITIALLVVSLSLELVEAYVGYKRWRDPLSVRGLVVVASVLEGVGLFSIW
CLLRFLPGGILETEVSENQYKFLNIMLYGVLVVTFGGTLAEIVYYFSAPG
RFRYLSVFGNSLTWLASALTEVLVTAYLVWRLQWWENAEDETADEETWPV
LVAAVVGLVVLEVAALLVLWIARVLIARAKSALLTAKDLSLKEPCSGAAN
GSGAASHKEI*
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mRNA from alignment at Ecto-sp8_S_contig921:5016..9401+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig921.30586.1 ID=mRNA_Ecto-sp8_S_contig921.30586.1|Name=mRNA_Ecto-sp8_S_contig921.30586.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4386bp|location=Sequence derived from alignment at Ecto-sp8_S_contig921:5016..9401+ (Ectocarpus species8 EcLAC_412)
ACACACGAAAGGACCAACCCCATCTCGCCCTCTCCACCCTCCCTCGCACA
CTCTCTTTACTTTGGGGCTGCACACGCACGGAACTACGAGGATAGCATGA
GCGCTGAATGTGAGTGGGGCTGGGCTGTGTCCTGGCGAGGAGGTGTCACC
GATGTTCCGGTAGACTTGACGGACTCTCCAACATCGAGGGGCTGGGGGCA
GAAGGCACCCAATTTGCAGTTGTCCTCGTCACAAGAAGACGTGTTTCTAG
ACTTTATCCTGGTTGCTTCTCCCTCCCTCTGCCGCACGCTCCCTCCGAAT
TGCAGTGCAGCTAAATCATAGGCTACTGCTGCTGCTTGTGCGTCTCTCTC
CCGGAATCCTTGGCTCATTTTCTGCGACAAAATTACAGTTCGATTCGTTG
ATGCCGTTGACTGACAGGCAGAGAGGTTTCGGAATACAATAACACAACGG
AACTGAAATCAAATCATCGGCCGGTCGGCCGGTCCTCCAAGTGCGATGTG
ACTACTGTGCAGCAGAGTACATGTAGTCTAAATCATCCTTTGGGAGGCAG
CGAAGTTTCGGTGAAGCTTCGGTGAAGCTTGCGGAATAATGCTGGTACAT
AACAACATCAGTAGTCTTGATGAGCCGAACACACTGTAGCACCTCAGCAA
ATGCACCACACCGGCAGTCTGAGTCCACAGCAGTCAGTGTAGTGTAGGAT
TTTTTGGTTGAGCGCATCAAAACGGGGAGGAGAACTCTCCGTCATGAGCG
GTTTGTCGTTGATGATAGATTTTACCGGGGTAATCCCTTGTTTGTTGCTG
CCGCCCCGGCAAATCAAGAGTACAAGCCAGCTTTGACCGGGATCGTCGAT
CGTCTTTATCGGTTGGATAACAAACCGCGCCTTGGAGGAATTTCTGGTGT
CCATTTTTATTTATTTATTTATTTTTAGGACGGTGTAGTCCACTCCCCCA
TGAAGGGCAGTTGGCTTGTGACCACGGAAGGCGTCCGCGTCAGTTGGACC
AGTATTACACGGACATTAGAAGGTACTGAGTGGAGACCGGATCGGTTTTT
AATGCGAAGACAACACCACCACCACCAACAACAGCCAGACTTGTTGCCGG
CCGCATTCGATTGCTGCCTTTCTTGGGCACCCCGTTGTGAAGAACCCGGT
CAACACCGACTCTCTCGAAGGGCGGGCTGGGTTTTCGAGGTTACTGTTGC
CCTTTGCGGTATTTTCCATCCAGCACAACTCTCTCTGAACACCTGCTGTG
ACGGTGGCACCCAGGCATCATATGTATGAGGTCTACGAAACATTTTATTC
GTCCCACGCTGGAGAACGTTTCCATGATGTTTGGGCCTTGTGTCGAAAAT
TTGGGGATGAACGTGCAGGTCAATCTCTGTTCTGGACAGTGTTCGATTTT
GTCGAGCTACGAGTGTTTATAACTGGAAGAAAAACCTCTGTGTGAAGACT
TTCAAGAGGTATTAATCTGTGCGTCGTCTATCGAGAATCGTAAAGTCGTT
TTTTCGCAACAGAAGGTGGCAACATAACCTAATATTTGTCGTGCACAGCC
GGCTTGTGTTGTCGGATTTAAAGTAACCGCCCCCACCCGAGATATTTGAA
ATATTTTTCCGTTAACATTGGGAAACTTGTGTCGGATGGACCGTTTGACA
TGGCTCCAGCGGTGAACTCTACTTGCTACAGGTGGAAGAACGTGATTATT
TGCAAGAGAAAATGCGTCTAAACGTTGCTTCCTGCTGGTTGCGTGTACTT
AACGTTATTGCGTGTGTCTCTGACAACCATGTGCTTGCTTGAACCGGGTG
AACATCCCGCCTGCTTTCTTTTTTCTGTTCCGTCGGCAGTATCCCAGCCG
GATTTCGACCCAGATGGCACGGCTGCGACCAGCACCGCCTCCGAGGATCA
GCGAAATTATCGTGCTGCTTATCTCAAGAAGCAAGCCAGAAGGGGGATGA
AGCACGCGGCGGCGTTCCTGTCTCTGGGGTTGTTCTTGGAGATTGGAGCG
ACGTTTTGGACCTTGGCGCAGGCAATAGCGTCTGGGGTCTTCGACGAAGC
GGACTGCGGAGTACGAGCCCTTTCCTTGTACCACAACGAGCGATTGCCTT
CAAACTGCCAACAGCTGGATAGTTCGGTGGTTTGGTTCGACGAAGACCGA
ACCGTGAGCACGTTCACCAGCTGCAGTGGCCTCGACGACCCGGCCATCGA
CCAGCTGTGCGATTGCGCCAAGTACAACAAGGTTAGCACTGGTTGCACCT
GGACATCCGCAAGCTCCACCCGTGACGAAATCGAAGGCTTGTGCGTCGCG
GTGCCTGTGATTGCGCTGACTGCGGACCTGCAGGAAGAGTACGGTACCAC
CTACGATTGGCTCCTAGACAGCTCAGAGCTCGAGTATCAAGACGACTGCA
GGCCGCTGAGCCCGGAAGGTTTCGAAGACATCACGATCGCGTTGCTCGTG
GTTTCCCTGAGCCTGGAGCTCGTGGAGGCGTACGTGGGCTACAAGCGCTG
GAGAGATCCTCTGTCCGTGCGAGGTCTGGTGGTCGTCGCATCGGTGCTAG
AGGGCGTGGGTCTTTTTTCGATCTGGTGCCTGCTGCGGTTCCTGCCGGGT
GGCATTCTCGAGACGGAGGTTAGCGAGAACCAGTACAAGTTCCTGAACAT
CATGCTGTACGGCGTTCTTGTCGTGACATTCGGAGGCACGCTGGCCGAGA
TCGTGTACTACTTCTCCGCTCCCGGCCGGTTCAGGTACCTCAGCGTGTTC
GGGAACTCGTTGACATGGCTTGCTTCGGCGCTCACCGAGGTGCTGGTGAC
GGCGTACCTTGTCTGGAGGCTGCAGTGGTGGGAGAACGCGGAGGATGAGA
CCGCGGACGAAGAGACGTGGCCTGTTTTGGTGGCTGCAGTGGTCGGTCTG
GTCGTCCTAGAGGTTGCGGCCCTGCTGGTTTTGTGGATTGCTCGCGTACT
GATTGCGAGAGCCAAGTCGGCGCTCTTGACAGCCAAGGACCTGAGCTTGA
AAGAGCCGTGCAGCGGAGCAGCCAACGGCAGTGGCGCTGCAAGCCACAAA
GAAATCTAAGGAACGCGCTAGCTTCCAATAGGTCGGGCAGGAAAATCATT
TCCGTTGTTTGTCTGACAGCCATGGGAACCTAGTTAAAGTATACTACAGA
GCGTGCACAGTGTTGGCGTGTGTAACTGACTGTTTTTTTTTGTAATGTTA
CACTTGTAGGGCGTCATTTGTTCTGTCTGGATGGACATTGTAGTGAGTGG
TTTTGTGTGGCGTGGTTCTTTCGGTCTGGGTGGGCATTTGCATATGTAAG
TAGAAGTAGAAGGGATGGGTGCGTACGCCTGTGGGAACATAGAGGGCCTT
GGATCACGGGTTTGGCCTTCTTGCAAGGCCCGCCGGATCTGCTGATGTGA
TGTGCGTGTTATTTCCCTACCTTGTGTCCCCAGAAATCGGTATTTGTAGC
GCAGTCCGGTGTTGTCGCCGTAGATGCTGCTGGTGTGTTGATTTCGTGTT
TGTTGTGTTTCTTTTTTATTTGCATCGACCGCGTTAACCGGCTGGCCAAT
GAAAATACGTCAGTCTCAGTGCGGTGCAAAACACAAAAACACTTGTACAT
GCCATTAACTGGGACCCTGTAAGGGAGCATCATGGGGAGGGGGTTGAAAG
GTCAATAACCGTTTGTGTCAGGCACGCTTAAGGGATGGATGCAGCACGTT
TGAAATGTCTTCGCCGGAAACGTGGTGCAATCCTCGCCACAAGGGATGGC
GGGGGCTGGGGGAGCTCGGGTGCGCACGTGCGCAGAGACTATCAGTCTTA
ACCGCTCCACACGGATGTATCGGCATCCCGAAGTATTTGAGCCTCTAGAG
CATTCTGCGAGACCGTGTTCTTGCTCACGCTCTGTTTTTGTTTTTTTTGC
AATGAATGGGCACAGCGCCCGCCTACTCGGCATCATAGAAAAAGGGGTGT
TGGTTTTCAATACGGAAAACAAGAGAGCGGAAGAGGGTCTAGAATGACTG
GGGAGGGGGGCTCTGCAGGTGAGAAAGGGATATGTCGGGGCACGCGAACC
CCCCAGACTCGCCAGGAGAGTTACACCCAATATGGATTATTGCGTCACGT
AGTGGATAGTGACGATATTATGTTTCGCATTCGGGGTTTGGTTGATCTTG
TCTCGGCAGAAACGCATTGTGTCGCGCTTTCTGGTGTTTTCTCGTGGTGT
TTCTTTTTGTGTGTTTGTGTCCGCGTTCATTTGTCGCTACAACAGTGGAG
CGCGTGTTCGCTAGTAGACCTTGAGGGTAGGACGGCTGAAACCTTCGCAT
AGGAATATAATGAGTGACCTTTGCATAGGAAAAAAGTGAGTGACCTTCGC
ATAGGAATAAAGCGAGAATTTCAGATGGATCCTACC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig921:5016..9401+

>mRNA_Ecto-sp8_S_contig921.30586.1 ID=mRNA_Ecto-sp8_S_contig921.30586.1|Name=mRNA_Ecto-sp8_S_contig921.30586.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1233bp|location=Sequence derived from alignment at Ecto-sp8_S_contig921:5016..9401+ (Ectocarpus species8 EcLAC_412)
ATGAGCGCTGAATTATCCCAGCCGGATTTCGACCCAGATGGCACGGCTGC
GACCAGCACCGCCTCCGAGGATCAGCGAAATTATCGTGCTGCTTATCTCA
AGAAGCAAGCCAGAAGGGGGATGAAGCACGCGGCGGCGTTCCTGTCTCTG
GGGTTGTTCTTGGAGATTGGAGCGACGTTTTGGACCTTGGCGCAGGCAAT
AGCGTCTGGGGTCTTCGACGAAGCGGACTGCGGAGTACGAGCCCTTTCCT
TGTACCACAACGAGCGATTGCCTTCAAACTGCCAACAGCTGGATAGTTCG
GTGGTTTGGTTCGACGAAGACCGAACCGTGAGCACGTTCACCAGCTGCAG
TGGCCTCGACGACCCGGCCATCGACCAGCTGTGCGATTGCGCCAAGTACA
ACAAGGTTAGCACTGGTTGCACCTGGACATCCGCAAGCTCCACCCGTGAC
GAAATCGAAGGCTTGTGCGTCGCGGTGCCTGTGATTGCGCTGACTGCGGA
CCTGCAGGAAGAGTACGGTACCACCTACGATTGGCTCCTAGACAGCTCAG
AGCTCGAGTATCAAGACGACTGCAGGCCGCTGAGCCCGGAAGGTTTCGAA
GACATCACGATCGCGTTGCTCGTGGTTTCCCTGAGCCTGGAGCTCGTGGA
GGCGTACGTGGGCTACAAGCGCTGGAGAGATCCTCTGTCCGTGCGAGGTC
TGGTGGTCGTCGCATCGGTGCTAGAGGGCGTGGGTCTTTTTTCGATCTGG
TGCCTGCTGCGGTTCCTGCCGGGTGGCATTCTCGAGACGGAGGTTAGCGA
GAACCAGTACAAGTTCCTGAACATCATGCTGTACGGCGTTCTTGTCGTGA
CATTCGGAGGCACGCTGGCCGAGATCGTGTACTACTTCTCCGCTCCCGGC
CGGTTCAGGTACCTCAGCGTGTTCGGGAACTCGTTGACATGGCTTGCTTC
GGCGCTCACCGAGGTGCTGGTGACGGCGTACCTTGTCTGGAGGCTGCAGT
GGTGGGAGAACGCGGAGGATGAGACCGCGGACGAAGAGACGTGGCCTGTT
TTGGTGGCTGCAGTGGTCGGTCTGGTCGTCCTAGAGGTTGCGGCCCTGCT
GGTTTTGTGGATTGCTCGCGTACTGATTGCGAGAGCCAAGTCGGCGCTCT
TGACAGCCAAGGACCTGAGCTTGAAAGAGCCGTGCAGCGGAGCAGCCAAC
GGCAGTGGCGCTGCAAGCCACAAAGAAATCTAA
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