mRNA_Ecto-sp8_S_contig92095.30585.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig92095.30585.1
Unique NamemRNA_Ecto-sp8_S_contig92095.30585.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig92095.30585.1 vs. uniprot
Match: D7G0K7_ECTSI (HAD-superfamily hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0K7_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 5.720e-21
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:   10 VMFEDSFKNLVTAKSLGMSTVFVQSDTAREEGVGSVELDTVDAVVCDV 153
            VMFEDSFKNLVTA SLGM+TVFVQSDTAREEGVGSVELDTVDAVVCD+
Sbjct:  161 VMFEDSFKNLVTATSLGMATVFVQSDTAREEGVGSVELDTVDAVVCDL 208
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BLAST of mRNA_Ecto-sp8_S_contig92095.30585.1 vs. uniprot
Match: A0A836C9Z4_9STRA (HAD-superfamily hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Z4_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.950e-7
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   13 MFEDSFKNLVTAKSLGMSTVFVQSDTAREEGVGSVELDTVDAVVCD 150
            +FEDS+KN +TAKS+GM++V + SDTA EEGV    +  VDAVV D
Sbjct:  178 LFEDSYKNCLTAKSVGMTSVLINSDTAIEEGVTEEMMAHVDAVVLD 223
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BLAST of mRNA_Ecto-sp8_S_contig92095.30585.1 vs. uniprot
Match: A0A7R9T8G8_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9T8G8_MICPS)

HSP 1 Score: 48.9 bits (115), Expect = 1.260e-5
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   16 FEDSFKNLVTAKSLGMSTVFVQSDTAREEG 105
            FEDS KNL  AK+LGM+TV VQ DTAREEG
Sbjct:   79 FEDSVKNLAAAKTLGMTTVLVQGDTAREEG 108
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BLAST of mRNA_Ecto-sp8_S_contig92095.30585.1 vs. uniprot
Match: C1N9D1_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N9D1_MICPC)

HSP 1 Score: 48.9 bits (115), Expect = 4.130e-5
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   16 FEDSFKNLVTAKSLGMSTVFVQSDTAREEG 105
            FEDS KNL  AK+LGM+TV VQ DTAREEG
Sbjct:  301 FEDSVKNLAAAKTLGMTTVLVQGDTAREEG 330
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92095.30585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0K7_ECTSI5.720e-2193.75HAD-superfamily hydrolase n=2 Tax=Ectocarpus TaxID... [more]
A0A836C9Z4_9STRA1.950e-758.70HAD-superfamily hydrolase n=1 Tax=Tribonema minus ... [more]
A0A7R9T8G8_MICPS1.260e-576.67Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
C1N9D1_MICPC4.130e-576.67Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92095contigEcto-sp8_S_contig92095:15..197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score88.6
Seed ortholog evalue1e-15
Seed eggNOG ortholog2880.D7G0K7
Model size183
KEGG rclassRC00017
KEGG koko:K07025,ko:K18551
KEGG ReactionR02323,R03346
KEGG Pathwayko00760,map00760
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.nucleotidase activity
EggNOG OGsCOG1011@1,KOG3109@2759
Cds size171
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145272.817306-UTR-Ecto-sp8_S_contig92095:14..261681145272.817306-UTR-Ecto-sp8_S_contig92095:14..26Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig92095 15..26 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145272.832114-CDS-Ecto-sp8_S_contig92095:26..1971681145272.832114-CDS-Ecto-sp8_S_contig92095:26..197Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig92095 27..197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92095.30585.1prot_Ecto-sp8_S_contig92095.30585.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig92095 27..197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig92095.30585.1

>prot_Ecto-sp8_S_contig92095.30585.1 ID=prot_Ecto-sp8_S_contig92095.30585.1|Name=mRNA_Ecto-sp8_S_contig92095.30585.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=57bp
MFEDSFKNLVTAKSLGMSTVFVQSDTAREEGVGSVELDTVDAVVCDVRNF
LHASPK*
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mRNA from alignment at Ecto-sp8_S_contig92095:15..197+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig92095.30585.1 ID=mRNA_Ecto-sp8_S_contig92095.30585.1|Name=mRNA_Ecto-sp8_S_contig92095.30585.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92095:15..197+ (Ectocarpus species8 EcLAC_412)
AACTACGAAGTGATGTTCGAGGACTCCTTCAAGAACCTCGTGACGGCCAA
GTCGCTGGGGATGTCCACCGTGTTCGTGCAGTCGGACACCGCGAGAGAAG
AGGGGGTCGGCTCCGTCGAGCTCGACACTGTCGACGCAGTGGTCTGCGAC
GTGAGGAATTTTCTGCATGCCTCGCCTAAATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig92095:15..197+

>mRNA_Ecto-sp8_S_contig92095.30585.1 ID=mRNA_Ecto-sp8_S_contig92095.30585.1|Name=mRNA_Ecto-sp8_S_contig92095.30585.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92095:15..197+ (Ectocarpus species8 EcLAC_412)
ATGTTCGAGGACTCCTTCAAGAACCTCGTGACGGCCAAGTCGCTGGGGAT
GTCCACCGTGTTCGTGCAGTCGGACACCGCGAGAGAAGAGGGGGTCGGCT
CCGTCGAGCTCGACACTGTCGACGCAGTGGTCTGCGACGTGAGGAATTTT
CTGCATGCCTCGCCTAAATGA
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