mRNA_Ecto-sp8_S_contig9208.30580.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9208.30580.1
Unique NamemRNA_Ecto-sp8_S_contig9208.30580.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9208.30580.1 vs. uniprot
Match: D8LSP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSP8_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.870e-38
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:    4 VVKYWVLFLIASDAGLVTWTMRVAAEFYSKVRRRSPRCWRKTCSVSSRPPLRTRKSLSSFCPKQPEPQAKM 216
            VVKYWV+FLIASDAGLVTWTMRVAAEF+SKVRRRSPRCWRKTCSVSSRPPL TRKSLSSFC +Q EPQAKM
Sbjct:    2 VVKYWVIFLIASDAGLVTWTMRVAAEFFSKVRRRSPRCWRKTCSVSSRPPLSTRKSLSSFCSRQTEPQAKM 72
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9208.30580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSP8_ECTSI1.870e-3891.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9208contigEcto-sp8_S_contig9208:149..1949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size216
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003060.1
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145272.5094347-CDS-Ecto-sp8_S_contig9208:148..2991681145272.5094347-CDS-Ecto-sp8_S_contig9208:148..299Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9208 149..299 -
1681145272.5251408-CDS-Ecto-sp8_S_contig9208:1884..19491681145272.5251408-CDS-Ecto-sp8_S_contig9208:1884..1949Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9208 1885..1949 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9208.30580.1prot_Ecto-sp8_S_contig9208.30580.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9208 149..1949 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9208.30580.1

>prot_Ecto-sp8_S_contig9208.30580.1 ID=prot_Ecto-sp8_S_contig9208.30580.1|Name=mRNA_Ecto-sp8_S_contig9208.30580.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=72bp
IVVKYWVLFLIASDAGLVTWTMRVAAEFYSKVRRRSPRCWRKTCSVSSRP
PLRTRKSLSSFCPKQPEPQAKM
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mRNA from alignment at Ecto-sp8_S_contig9208:149..1949-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9208.30580.1 ID=mRNA_Ecto-sp8_S_contig9208.30580.1|Name=mRNA_Ecto-sp8_S_contig9208.30580.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1801bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9208:149..1949- (Ectocarpus species8 EcLAC_412)
ATAGTGGTGAAGTACTGGGTCCTTTTTCTCATCGCCTCCGACGCCGGGCT
GGTAACGTGGACAATGTGAGAACTTTGAACAACATAAGCTGTACTGTAGG
GAAGACGCCGTCGAAAAACTGCAGCGTGACAGACAGAGTGTTCCACCGAA
TAAGGTATCCCCGAAGTCGCACACACCCGTTTCTCGCAGCGGTTTCTCAA
GCACCTCTGTGCGGCGCCCCAAACTTACTGCGCATCTGCCCAATAGCGAA
CGCATGTCGCTGTTTCGTCTTGTTTGGCCTCTCTCTCTTTCTTGCACAGC
AGCAGTCTAGACAAAATAGGCGTCGGGGCAAGACACCACCATGCGGATGC
CTCGTTCGGGTCCCCACCTACTATCTGAAGCTCACTTGCCTCCCGTCGGC
AATGCATCTCGGGTATACATGCAGTCACTGTATATTGCTGTCTGCGTCGA
AGAACGCGCCACACAACTTACATCCTCGCACCGTCGTCTTATTGCACTGC
ACACGCGCACTGATTCACAACGTTCCCTCGCCAGCAACGTCAAGCCCGTG
CGAGTTTTCCTCAAGCAGCACACTATCAGTTGGTGGAATTTTTTGGCACG
ACCAGGCCTCAAAGCAAACACTTCCCGTGTGGCCTGCGCTTCTCAAAGAC
ACCTGGGATTTACAGCGACGTCACGCAACAGCCCGGGAAGCGGTGCCATT
TCTATAGCTAAGAGCTCGCTGGCTACCATAATGGGATTCCTTCCTCTGAA
GCAGGCCTTCGGGGAGTTTTGCCAGAGGGCTCTATGCAGTGAGGTACATT
ATTCAGACGCGGAAAGTTTGCGTGCCCCATTCTTAAAAAGCGCAGATAGC
TCGAACTTTGTTTTTTTCGCTTGGTTGCATGGACTCGATGTTTCGGATAC
ACATACTGTCGGGTTTGATATGACTTGGTTGGAACGTTGTGCTCGTCGTG
CCGACCCCATATATGTTCACTAGTCCATTACGTACTTGGTACTTTCGAGG
TAAAAACGTTTCCCGCTCGAGTGTGCATCTTTTCTGGAAACGACAACACC
CCTTGGGCCACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCTC
TCTCTCTCTCTTGCCGGTCTGCGGTCGCCCTGGTACTACCCCCAGTCGTT
CCAGTTCCTGATTGACGCGTCCGAGTTTCAGAGCTCGGTACATGCCGCTC
AATGTGGCCACGAGGACAAAAACTGCTTTGAAGAGTTTCTCGTCATCGCC
AACGAGTACATCAAGGACAACTCCAACTCCGAAATCAACATAGACAGCCG
TACGAAAAAGGAAATACTGAGGTTCCAGGAGCGCTCATCGTATGATTCCC
TCGACGTGGTAAGAGAGGGAAGAACAAGCTGTGCTGCTGGCAAATTCAGG
AGTGACTTTGGTTCGATATCGTTGGGTATTTTTCGTGTGCTTTGAGATGA
TGCGGTTGACGGTGAACCACTTCGAGCTCATCACCTGCACCACAAAGAAA
GAGGGCGCTCTGGGAATTCAATTAGTGTGACTACCCACAAGAAGTTGTGT
TTATCAGGAACTTTGTTGATATTGCATGCACTGTATACAACGAAGAGCTC
GATCGCGTCCAACGCTTCGGACTTGTGTATTTGCTCTCTCGTGTCGTCAG
GAGGGTCGCAGCGGAGTTTTACTCCAAGGTCAGAAGGAGATCGCCAAGAT
GTTGGCGGAAAACCTGCTCAGTAAGTTCAAGGCCACCGCTGAGGACAAGG
AAGTCGTTGTCAAGTTTCTGTCCGAAGCAACCTGAACCACAGGCGAAGAT
G
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9208:149..1949-

>mRNA_Ecto-sp8_S_contig9208.30580.1 ID=mRNA_Ecto-sp8_S_contig9208.30580.1|Name=mRNA_Ecto-sp8_S_contig9208.30580.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9208:149..1949- (Ectocarpus species8 EcLAC_412)
ATAGTGGTGAAGTACTGGGTCCTTTTTCTCATCGCCTCCGACGCCGGGCT
GGTAACGTGGACAATGAGGGTCGCAGCGGAGTTTTACTCCAAGGTCAGAA
GGAGATCGCCAAGATGTTGGCGGAAAACCTGCTCAGTAAGTTCAAGGCCA
CCGCTGAGGACAAGGAAGTCGTTGTCAAGTTTCTGTCCGAAGCAACCTGA
ACCACAGGCGAAGATG
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