mRNA_Ecto-sp8_S_contig92024.30573.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig92024.30573.1
Unique NamemRNA_Ecto-sp8_S_contig92024.30573.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig92024.30573.1 vs. uniprot
Match: D8LHH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHH0_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 1.130e-89
Identity = 152/154 (98.70%), Postives = 152/154 (98.70%), Query Frame = 1
Query:    1 PPRPKRWVPVKRPVALQAARQQLPVCGMEQEIMEAVHENDTIILCGETGSGKSTQVPQFLYEAGYAAHGLIGVTQPRRVAAVGTAERVAVELGTKCGKGGAVAYQIRSDASGVGEKTRVKFMTDGVLLQEITSDLLLRKYSVVLLDEAHERNLN 462
            PPRPKRWVPVKRPVALQAARQQLPVCGMEQEIMEAVHENDTIILCGETGSGKSTQVPQFLYEAGYAAHGLIGVTQPRRVAAVGTAERVAVELGTKCGKGG VAYQIR DASGVGEKTRVKFMTDGVLLQEITSDLLLRKYSVVLLDEAHERNLN
Sbjct:  286 PPRPKRWVPVKRPVALQAARQQLPVCGMEQEIMEAVHENDTIILCGETGSGKSTQVPQFLYEAGYAAHGLIGVTQPRRVAAVGTAERVAVELGTKCGKGGTVAYQIRYDASGVGEKTRVKFMTDGVLLQEITSDLLLRKYSVVLLDEAHERNLN 439          
BLAST of mRNA_Ecto-sp8_S_contig92024.30573.1 vs. uniprot
Match: A0A813BCL9_9DINO (FAS4 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BCL9_9DINO)

HSP 1 Score: 190 bits (483), Expect = 5.000e-58
Identity = 98/145 (67.59%), Postives = 116/145 (80.00%), Query Frame = 1
Query:   40 VALQAARQQLPVCGMEQEIMEAVHENDTIILCGETGSGKSTQVPQFLYEAGYA----AHGLIGVTQPRRVAAVGTAERVAVELGTKCGKGGAVAYQIRSDASGVGEKTRVKFMTDGVLLQEITSDLLLRKYSVVLLDEAHERNLN 462
            V ++ +R +LPVC MEQE+ME +  +D ++LCGETGSGK+TQVPQFLYE G+       GLIGVTQPRRVAAV  A+RV  ELG  CG+G  VAYQIR DASGVG+KTRVKFMTDG+LL+EI  DLLLR YS ++LDEAHERNLN
Sbjct:  114 VGVRESRSKLPVCQMEQEVMERILGHDVVVLCGETGSGKTTQVPQFLYEYGFGDKEGTPGLIGVTQPRRVAAVAMAQRVGDELGVGCGQGKRVAYQIRHDASGVGKKTRVKFMTDGILLREIQDDLLLRSYSAIILDEAHERNLN 258          
BLAST of mRNA_Ecto-sp8_S_contig92024.30573.1 vs. uniprot
Match: A0A7S1CHY0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHY0_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.070e-57
Identity = 102/151 (67.55%), Postives = 120/151 (79.47%), Query Frame = 1
Query:   22 VPVKRPVALQAARQQLPVCGMEQEIMEAVHENDTIILCGETGSGKSTQVPQFLYEAGYAA----HGLIGVTQPRRVAAVGTAERVAVELGTKCGKGGAVAYQIRSDASGVGEKTRVKFMTDGVLLQEITSDLLLRKYSVVLLDEAHERNLN 462
            V VKR   +QA R +LPVCGMEQEIME + +ND II+ GETGSGK+TQVPQFLYEAG+ +     G+IGVTQPRRVAAV  A+RVA EL  K GK G V +QIR DA+ VG+ TR+KFMTDG+LL+EI  DLLLRKYS ++LDEAHERNLN
Sbjct:  111 VKVKRDSRIQAQRLELPVCGMEQEIMETILDNDVIIISGETGSGKTTQVPQFLYEAGFGSPDIVKGMIGVTQPRRVAAVAMAQRVAQELNVKQGKNGQVGHQIRHDATTVGKNTRIKFMTDGILLREIQQDLLLRKYSAIVLDEAHERNLN 261          
BLAST of mRNA_Ecto-sp8_S_contig92024.30573.1 vs. uniprot
Match: A0A812TM39_9DINO (ECM16 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TM39_9DINO)

HSP 1 Score: 195 bits (495), Expect = 1.410e-56
Identity = 103/151 (68.21%), Postives = 118/151 (78.15%), Query Frame = 1
Query:   22 VPVKRPVALQAARQQLPVCGMEQEIMEAVHENDTIILCGETGSGKSTQVPQFLYEAGYAAHG----LIGVTQPRRVAAVGTAERVAVELGTKCGKGGAVAYQIRSDASGVGEKTRVKFMTDGVLLQEITSDLLLRKYSVVLLDEAHERNLN 462
            V V R   L AAR +LPVCGMEQEIME V+END +ILCGETGSGK+TQVPQFLYEAG+   G    ++ VTQPRRVAAV  A RVA EL TK G  G V YQ+R DAS V   TRVKF+TDG+LL+E+ SDLLLR+YSV++LDEAHERNLN
Sbjct:  318 VSVPRSAELSAARMELPVCGMEQEIMEGVYENDVLILCGETGSGKTTQVPQFLYEAGFGTAGGTPGMVAVTQPRRVAAVAMANRVATELCTKVGGSGHVGYQVRYDASHVSSHTRVKFLTDGILLREMQSDLLLRRYSVIILDEAHERNLN 468          
BLAST of mRNA_Ecto-sp8_S_contig92024.30573.1 vs. uniprot
Match: A0A3L6VD53_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VD53_9STRA)

HSP 1 Score: 190 bits (483), Expect = 2.050e-56
Identity = 101/154 (65.58%), Postives = 116/154 (75.32%), Query Frame = 1
Query:   13 KRWVPVKRPVALQAARQQLPVCGMEQEIMEAVHENDTIILCGETGSGKSTQVPQFLYEAGYAAHGL----IGVTQPRRVAAVGTAERVAVELGTKCGKGGAVAYQIRSDASGVGEKTRVKFMTDGVLLQEITSDLLLRKYSVVLLDEAHERNLN 462
            +R V V R  A+Q  R QLPVC  EQEIMEA+  N  +ILCGETGSGK+TQVPQFLYEAGY   G+    IGVTQPRRVAAV TA+RVA EL    GK G+V YQIR D   V + TRVKFMTDG+LL+EI  D LL+KYS++LLDEAHERN+N
Sbjct:  203 QRKVTVTRVEAIQLGRMQLPVCNAEQEIMEAIELNSVVILCGETGSGKTTQVPQFLYEAGYGTDGMHPGMIGVTQPRRVAAVSTAQRVATELNVPFGKRGSVGYQIRYDNDHVSDSTRVKFMTDGILLKEIQQDFLLKKYSIILLDEAHERNVN 356          
BLAST of mRNA_Ecto-sp8_S_contig92024.30573.1 vs. uniprot
Match: A0A3R7Y8L7_9STRA (Helicase ATP-binding domain-containing protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7Y8L7_9STRA)

HSP 1 Score: 193 bits (491), Expect = 2.570e-56
Identity = 101/154 (65.58%), Postives = 117/154 (75.97%), Query Frame = 1
Query:   13 KRWVPVKRPVALQAARQQLPVCGMEQEIMEAVHENDTIILCGETGSGKSTQVPQFLYEAGYAAHGL----IGVTQPRRVAAVGTAERVAVELGTKCGKGGAVAYQIRSDASGVGEKTRVKFMTDGVLLQEITSDLLLRKYSVVLLDEAHERNLN 462
            +R V V R  A+Q  R QLPVC  EQEIMEA+  N  +ILCGETGSGK+TQVPQFLYEAGY   G+    IGVTQPRRVAAV TA+RVA EL    GK G+V YQIR D   VG+ TR+KFMTDG+LL+EI  D LL+KYS++LLDEAHERN+N
Sbjct:  337 QRKVTVTRVEAIQLGRMQLPVCNAEQEIMEAIESNSVVILCGETGSGKTTQVPQFLYEAGYGTDGMHPGMIGVTQPRRVAAVSTAQRVATELNVPFGKRGSVGYQIRYDNDHVGDSTRIKFMTDGILLKEIQQDFLLKKYSIILLDEAHERNVN 490          
BLAST of mRNA_Ecto-sp8_S_contig92024.30573.1 vs. uniprot
Match: A0A482SW22_9ARCH (DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SW22_9ARCH)

HSP 1 Score: 199 bits (506), Expect = 2.910e-56
Identity = 100/148 (67.57%), Postives = 122/148 (82.43%), Query Frame = 1
Query:   28 VKRPVALQAARQQLPVCGMEQEIMEAVHENDTIILCGETGSGKSTQVPQFLYEAGYAAHGLIGVTQPRRVAAVGTAERVAVELG---TKCGKGGAVAYQIRSDASGVGEKTRVKFMTDGVLLQEITSDLLLRKYSVVLLDEAHERNLN 462
            V RP+ +QA+R QLPVCGMEQEI+EAVHE+D IILCGETGSGKSTQ+PQFLYEAGY   GL+GVTQPRRVA   T++RV  E+G       +G  V YQIR D+S VG+ T++KFMTDG+LL+EIT D+LLR+YSV++LDEAHERN+N
Sbjct:  409 VSRPMDIQASRMQLPVCGMEQEIIEAVHEHDVIILCGETGSGKSTQIPQFLYEAGYTKRGLVGVTQPRRVAVTSTSDRVNYEMGQINNDSREGRLVGYQIRYDSSTVGKVTKIKFMTDGILLREITQDILLRQYSVIILDEAHERNVN 556          
BLAST of mRNA_Ecto-sp8_S_contig92024.30573.1 vs. uniprot
Match: A0A6G0XDB3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XDB3_9STRA)

HSP 1 Score: 195 bits (496), Expect = 6.310e-55
Identity = 105/152 (69.08%), Postives = 117/152 (76.97%), Query Frame = 1
Query:   13 KRWVPVKRPVALQAARQQLPVCGMEQEIMEAVHENDTIILCGETGSGKSTQVPQFLYEAGYAAH--GLIGVTQPRRVAAVGTAERVAVELGTKCGKGGAVAYQIRSDASGVGEKTRVKFMTDGVLLQEITSDLLLRKYSVVLLDEAHERNLN 462
            KR V V R   +Q AR QLPVC  EQEIMEA+  +  +ILCGETGSGK+TQVPQFLYEAGY     G+IGVTQPRRVAAV TA+RVA EL    GK GAV YQIR D   VGEKT VKFMTDG+LL+EI  D LL+KYS+VLLDEAHERN+N
Sbjct:  310 KRRVHVNRKDDIQLARMQLPVCSSEQEIMEAIENHSVVILCGETGSGKTTQVPQFLYEAGYGTERPGMIGVTQPRRVAAVSTAQRVATELNVDFGKTGAVGYQIRYDNEHVGEKTIVKFMTDGILLKEIQQDFLLKKYSIVLLDEAHERNVN 461          
BLAST of mRNA_Ecto-sp8_S_contig92024.30573.1 vs. uniprot
Match: A0A485L2E9_9STRA (Aste57867_15113 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L2E9_9STRA)

HSP 1 Score: 194 bits (493), Expect = 1.610e-54
Identity = 103/151 (68.21%), Postives = 118/151 (78.15%), Query Frame = 1
Query:   22 VPVKRPVALQAARQQLPVCGMEQEIMEAVHENDTIILCGETGSGKSTQVPQFLYEAGYAAHGL----IGVTQPRRVAAVGTAERVAVELGTKCGKGGAVAYQIRSDASGVGEKTRVKFMTDGVLLQEITSDLLLRKYSVVLLDEAHERNLN 462
            V V+R  ++Q AR QLPVC  EQEIMEA+  +  +ILCGETGSGK+TQVPQFLYEAGY   G+    IGVTQPRRVAAV TAERVA EL    G+ G V YQIR D   VG+KTRVKFMTDG+LL+EI +D LL+KYSVVLLDEAHERN+N
Sbjct:  314 VHVRRVESIQLARMQLPVCSSEQEIMEAIETHSVVILCGETGSGKTTQVPQFLYEAGYGTEGMHPGMIGVTQPRRVAAVSTAERVATELNVAFGRHGTVGYQIRYDNEHVGDKTRVKFMTDGILLKEIQTDFLLKKYSVVLLDEAHERNVN 464          
BLAST of mRNA_Ecto-sp8_S_contig92024.30573.1 vs. uniprot
Match: A0A1V9YYF6_9STRA (ATP-dependent RNA helicase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YYF6_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.220e-54
Identity = 101/154 (65.58%), Postives = 118/154 (76.62%), Query Frame = 1
Query:   13 KRWVPVKRPVALQAARQQLPVCGMEQEIMEAVHENDTIILCGETGSGKSTQVPQFLYEAGYAAH----GLIGVTQPRRVAAVGTAERVAVELGTKCGKGGAVAYQIRSDASGVGEKTRVKFMTDGVLLQEITSDLLLRKYSVVLLDEAHERNLN 462
            K+ VPV R   +Q AR QLPVC  EQEIMEA+  N  +ILCGETGSGK+TQVPQFLYE+GY       G+IGVTQPRRVAAV TA+RVA EL  + GK G+V YQIR D   VG  TR+KFMTDG+LL+EI  D LL+KYS++LLDEAHERN+N
Sbjct:  238 KKLVPVHRKEDIQLARMQLPVCSSEQEIMEAISLNPVVILCGETGSGKTTQVPQFLYESGYGFDEHNPGMIGVTQPRRVAAVSTAQRVATELNVEFGKNGSVGYQIRYDNEHVGNNTRIKFMTDGILLKEIQQDFLLKKYSIILLDEAHERNVN 391          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig92024.30573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHH0_ECTSI1.130e-8998.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A813BCL9_9DINO5.000e-5867.59FAS4 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A7S1CHY0_9STRA1.070e-5767.55Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A812TM39_9DINO1.410e-5668.21ECM16 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A3L6VD53_9STRA2.050e-5665.58Helicase ATP-binding domain-containing protein n=1... [more]
A0A3R7Y8L7_9STRA2.570e-5665.58Helicase ATP-binding domain-containing protein n=1... [more]
A0A482SW22_9ARCH2.910e-5667.57DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906... [more]
A0A6G0XDB3_9STRA6.310e-5569.08Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485L2E9_9STRA1.610e-5468.21Aste57867_15113 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9YYF6_9STRA2.220e-5465.58ATP-dependent RNA helicase (Fragment) n=1 Tax=Thra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig92024contigEcto-sp8_S_contig92024:160..621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score298.1
Seed ortholog evalue2.3e-78
Seed eggNOG ortholog2880.D8LHH0
Preferred nameDHX37
Model size462
KEGG koko:K14780
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022613,GO:0030490,GO:0030554,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042274,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1990904
Exons1
EggNOG free text desc.ATP-dependent RNA helicase
EggNOG OGsCOG1643@1,KOG0926@2759
EC3.6.4.13
Cds size462
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145272.067222-CDS-Ecto-sp8_S_contig92024:159..6211681145272.067222-CDS-Ecto-sp8_S_contig92024:159..621Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig92024 160..621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig92024.30573.1prot_Ecto-sp8_S_contig92024.30573.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig92024 160..621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig92024.30573.1

>prot_Ecto-sp8_S_contig92024.30573.1 ID=prot_Ecto-sp8_S_contig92024.30573.1|Name=mRNA_Ecto-sp8_S_contig92024.30573.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=154bp
PPRPKRWVPVKRPVALQAARQQLPVCGMEQEIMEAVHENDTIILCGETGS
GKSTQVPQFLYEAGYAAHGLIGVTQPRRVAAVGTAERVAVELGTKCGKGG
AVAYQIRSDASGVGEKTRVKFMTDGVLLQEITSDLLLRKYSVVLLDEAHE
RNLN
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mRNA from alignment at Ecto-sp8_S_contig92024:160..621+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig92024.30573.1 ID=mRNA_Ecto-sp8_S_contig92024.30573.1|Name=mRNA_Ecto-sp8_S_contig92024.30573.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=462bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92024:160..621+ (Ectocarpus species8 EcLAC_412)
CCACCGCGTCCCAAGAGGTGGGTGCCCGTGAAGCGCCCGGTCGCCCTGCA GGCCGCTCGCCAGCAGCTGCCCGTGTGCGGGATGGAGCAGGAGATCATGG AGGCCGTCCACGAGAACGACACGATCATCCTGTGCGGGGAGACCGGGTCG GGGAAGTCCACCCAGGTGCCCCAGTTCCTTTACGAGGCCGGCTACGCCGC GCACGGCCTGATCGGGGTGACGCAGCCGAGACGGGTCGCGGCGGTGGGCA CGGCGGAGAGGGTCGCCGTCGAGCTCGGCACCAAGTGCGGGAAGGGGGGA GCGGTGGCGTACCAGATCCGTTCCGATGCGTCCGGGGTCGGGGAGAAGAC GAGGGTCAAGTTCATGACGGACGGTGTCTTGCTGCAGGAGATCACCTCTG ACCTGCTGCTGCGCAAGTACAGCGTGGTGCTGCTGGACGAGGCGCACGAG AGGAACCTTAAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig92024:160..621+

>mRNA_Ecto-sp8_S_contig92024.30573.1 ID=mRNA_Ecto-sp8_S_contig92024.30573.1|Name=mRNA_Ecto-sp8_S_contig92024.30573.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp8_S_contig92024:160..621+ (Ectocarpus species8 EcLAC_412)
CCACCGCGTCCCAAGAGGTGGGTGCCCGTGAAGCGCCCGGTCGCCCTGCA
GGCCGCTCGCCAGCAGCTGCCCGTGTGCGGGATGGAGCAGGAGATCATGG
AGGCCGTCCACGAGAACGACACGATCATCCTGTGCGGGGAGACCGGGTCG
GGGAAGTCCACCCAGGTGCCCCAGTTCCTTTACGAGGCCGGCTACGCCGC
GCACGGCCTGATCGGGGTGACGCAGCCGAGACGGGTCGCGGCGGTGGGCA
CGGCGGAGAGGGTCGCCGTCGAGCTCGGCACCAAGTGCGGGAAGGGGGGA
GCGGTGGCGTACCAGATCCGTTCCGATGCGTCCGGGGTCGGGGAGAAGAC
GAGGGTCAAGTTCATGACGGACGGTGTCTTGCTGCAGGAGATCACCTCTG
ACCTGCTGCTGCGCAAGTACAGCGTGGTGCTGCTGGACGAGGCGCACGAG
AGGAACCTTAAC
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