mRNA_Ecto-sp8_S_contig917.30513.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig917.30513.1
Unique NamemRNA_Ecto-sp8_S_contig917.30513.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig917.30513.1 vs. uniprot
Match: D7FW22_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW22_ECTSI)

HSP 1 Score: 779 bits (2011), Expect = 2.180e-280
Identity = 427/460 (92.83%), Postives = 438/460 (95.22%), Query Frame = 1 
Query:  229 MNETGSGTVTMWEFREYFDLPDDRSTTRLFRCFDEDRDNRIGFLELVVGMWTYCCNCNASVVCLCFDLLDMDHNGKIGADEFDFMIVDVFGPEWEKNDEAKAVHTWFHERDDALLGFPEMDIDAWSAFVSANLQIQAPAVHTRLVLQKKVLGVGFWTHCLRKSMTIFLGRTATVEQILSAHVSPNVLEELAQDRRLELDHDDSTQFNLRVIRRTGPFPQRRKYRDTAGKRLRAKAAAAVGAVAADNVKKFATLTVREVFERVTVPAGQDATWEEPKPPSTLQALMASLTAIVERAPPDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKGAPPDALALLKNRPGIDGVPLGSPAAAPSSPTGSAVDADPAIANAFYGLKPLPEAVAPVSPSAAAGSGRDRAKTAARTVKKGGSPAASSPGGSRAVGGGKTTLSRTGKELVGAGEVGCVGVRGGGAGRG 1608
            MNETG+GTVT+WEFREYF+LPDDRSTTRLFRCFDEDRDNRIGFLELVVGMWTYCCNCNASVVCLCFDLLDMDHNGKIGADEF+FMIVDVFGPEWEKNDEAKAVHTWFHERDDALLGFPEMD+DAWSAFVSAN QIQAPAVHTRLVLQKKVLGVGFWTHCL K+MTIFLGRTATVEQILSAHVSPN+LEELAQDRRLELDHDDSTQFNLRVIRRTGPFP+RRKYRD AGK+LRAKAAAAVGAVAADNVKKFATLTVRE FERVTVPAG+DATWE+PKPPSTLQALMASLTAIVERAPP GAXXXXXXXXXXXXXXXXXXXXXX       KKGAPPDALALLKNRPGIDG PLGSPA APSSPTGSAVDADPAIANAFYGLKPLPEAVAPVSPSAAAGSGRDRAKTAART KKG SPAASSP GSRAVGGGK TLSRTGKELVGAGEVGCVGV GG  G G
Sbjct:    1 MNETGNGTVTLWEFREYFNLPDDRSTTRLFRCFDEDRDNRIGFLELVVGMWTYCCNCNASVVCLCFDLLDMDHNGKIGADEFNFMIVDVFGPEWEKNDEAKAVHTWFHERDDALLGFPEMDMDAWSAFVSANPQIQAPAVHTRLVLQKKVLGVGFWTHCLPKNMTIFLGRTATVEQILSAHVSPNILEELAQDRRLELDHDDSTQFNLRVIRRTGPFPRRRKYRDMAGKKLRAKAAAAVGAVAADNVKKFATLTVREAFERVTVPAGKDATWEDPKPPSTLQALMASLTAIVERAPPGGAXXXXXXXXXXXXXXXXXXXXXXSKKRKNNKKGAPPDALALLKNRPGIDGAPLGSPAVAPSSPTGSAVDADPAIANAFYGLKPLPEAVAPVSPSAAAGSGRDRAKTAARTAKKGVSPAASSPEGSRAVGGGKITLSRTGKELVGAGEVGCVGVPGGEGGTG 460
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BLAST of mRNA_Ecto-sp8_S_contig917.30513.1 vs. uniprot
Match: A0A6H5JA76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA76_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 5.600e-37
Identity = 79/91 (86.81%), Postives = 82/91 (90.11%), Query Frame = -1 
Query: 1074 MAGSASTAEPVGDEGAAAGDPRGTPSIPGRFLSRASASGGAPFFLFFLFLEEVGDLDAGLRERDGEALLPAAGAPSGGARSTMAVRLAMSA 1346
            MAGSAS  EPVGDEG AAGDPRG PS+PGRFLSRASASGGAPF LFF FLEE GDLDAGLR+RDG+ALLPAAG P GGARSTMAVRLAMSA
Sbjct:    1 MAGSASITEPVGDEGMAAGDPRGAPSMPGRFLSRASASGGAPF-LFFFFLEEDGDLDAGLRKRDGDALLPAAGTPPGGARSTMAVRLAMSA 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig917.30513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW22_ECTSI2.180e-28092.83EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JA76_9PHAE5.600e-3786.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig917contigEcto-sp8_S_contig917:2938..6621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score92.8
Seed ortholog evalue5.2e-16
Seed eggNOG ortholog2880.D7FMZ9
Model size1655
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.EF-hand, calcium binding motif
EggNOG OGs2CXXS@1,2S4MR@2759
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-01_003060.1
Cds size1614
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig917.30513.1prot_Ecto-sp8_S_contig917.30513.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig917 2979..6621 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145267.3806174-UTR-Ecto-sp8_S_contig917:2937..29781681145267.3806174-UTR-Ecto-sp8_S_contig917:2937..2978Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig917 2938..2978 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145267.3949027-CDS-Ecto-sp8_S_contig917:2978..35181681145267.3949027-CDS-Ecto-sp8_S_contig917:2978..3518Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig917 2979..3518 -
1681145267.4074328-CDS-Ecto-sp8_S_contig917:3783..40021681145267.4074328-CDS-Ecto-sp8_S_contig917:3783..4002Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig917 3784..4002 -
1681145267.4208834-CDS-Ecto-sp8_S_contig917:4279..44591681145267.4208834-CDS-Ecto-sp8_S_contig917:4279..4459Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig917 4280..4459 -
1681145267.4318602-CDS-Ecto-sp8_S_contig917:4924..50541681145267.4318602-CDS-Ecto-sp8_S_contig917:4924..5054Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig917 4925..5054 -
1681145267.4492476-CDS-Ecto-sp8_S_contig917:5316..54731681145267.4492476-CDS-Ecto-sp8_S_contig917:5316..5473Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig917 5317..5473 -
1681145267.4595525-CDS-Ecto-sp8_S_contig917:5767..59271681145267.4595525-CDS-Ecto-sp8_S_contig917:5767..5927Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig917 5768..5927 -
1681145267.4713352-CDS-Ecto-sp8_S_contig917:6393..66211681145267.4713352-CDS-Ecto-sp8_S_contig917:6393..6621Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig917 6394..6621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig917.30513.1

>prot_Ecto-sp8_S_contig917.30513.1 ID=prot_Ecto-sp8_S_contig917.30513.1|Name=mRNA_Ecto-sp8_S_contig917.30513.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=538bp
MGAAASLVTEDQRASLHVAVLQVLPSVVYALEERRFKAGCFYETPEFAQQ
KELCPIFAALGLHEWSISHLWRHFRQMNETGSGTVTMWEFREYFDLPDDR
STTRLFRCFDEDRDNRIGFLELVVGMWTYCCNCNASVVCLCFDLLDMDHN
GKIGADEFDFMIVDVFGPEWEKNDEAKAVHTWFHERDDALLGFPEMDIDA
WSAFVSANLQIQAPAVHTRLVLQKKVLGVGFWTHCLRKSMTIFLGRTATV
EQILSAHVSPNVLEELAQDRRLELDHDDSTQFNLRVIRRTGPFPQRRKYR
DTAGKRLRAKAAAAVGAVAADNVKKFATLTVREVFERVTVPAGQDATWEE
PKPPSTLQALMASLTAIVERAPPDGAPAAGSNASPSLSRSPASRSPTSSK
KRKNKKKGAPPDALALLKNRPGIDGVPLGSPAAAPSSPTGSAVDADPAIA
NAFYGLKPLPEAVAPVSPSAAAGSGRDRAKTAARTVKKGGSPAASSPGGS
RAVGGGKTTLSRTGKELVGAGEVGCVGVRGGGAGRGR*
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mRNA from alignment at Ecto-sp8_S_contig917:2938..6621-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig917.30513.1 ID=mRNA_Ecto-sp8_S_contig917.30513.1|Name=mRNA_Ecto-sp8_S_contig917.30513.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3684bp|location=Sequence derived from alignment at Ecto-sp8_S_contig917:2938..6621- (Ectocarpus species8 EcLAC_412)
ATGGGAGCGGCGGCGAGCCTGGTTACAGAAGACCAACGAGCTAGCCTGCA
CGTCGCCGTCCTTCAAGTCCTTCCATCTGTGGTGTATGCCCTGGAGGAGA
GGAGATTCAAAGCTGGCTGTTTTTATGAGACACCGGAGTTCGCCCAACAA
AAAGAACTCTGTCCCATTTTTGCCGCGCTTGGGCTCCACGAATGGAGTAT
TTCGCACTTGTGGCGACACTTCCGTCAGGTGCGAGTATGGTTCCCATGGG
TCGAGATATATGACTCACAGCAATCACACACTGCAGCAGCAGTGCTTACT
CTGCAGAGACGTATGCGTAGTTGTTAAACGGCGTTTGCGATTTTTTTATG
CCAAATAAAAGCGCAACAGAATAATGCTCCTTGAGCTTGGCCGGTGAGCG
TCTGGTGAAATTGCTGTACCTCGTACCCCTACACACAGCCCAAACCCCTG
GGCTGGGCAAATTCAAGGACACCTCGAACAGAGAAAGTACTGTAGGTTAC
AAACCATAAGGTTGCCAGGAAGTCGACAGGACCAAACGAACACGAGAGCA
AAGCCAAACGAACTTCGCTTGTACATGCCACTTGCTTTACCTCGCCCCCA
GCCCCGTCCTTCAGTCCACACTCTACACAATCAACACATCTCTTAGCCAT
AGCTCTTCTCACCGCGCCCGCCATCCGTACACACTTGAGTCCAGATGAAT
GAGACGGGGAGCGGTACGGTGACAATGTGGGAGTTCCGAGAGTACTTCGA
CCTACCAGACGACCGCTCCACTACAAGGCTTTTCCGCTGCTTCGACGAGG
ATCGCGACAACAGGATTGGCTTCCTGGAGCTAGTCGTGGGCATGTGGACA
TACTGTAAGACAACGAATGCACACCCCGCGAAAGTTCGTCTGTTTGACGG
TTTAGACTTTGCGATCTCCTGCGATATTTTGGGGATTGTACGACACGACG
CCAGCACCACCAGATACTCGTGACAATCGATTTCACCCGAAACAAAGGCG
GGTACTTGACGCGTTCACACGCGGCACATACATCTACAGCTCGCGAGCAT
TCGGGGTCGGCTTGGGGTCATCATCTCCACCCAAGTAGCGATCAACCCTA
CTCTTCTGATGCCACACACACACACACACTTGGTTTTTCTGTGGACAGGC
TGCAACTGCAATGCTTCAGTGGTGTGCCTATGCTTCGACCTGCTAGACAT
GGACCACAACGGGAAGATCGGGGCCGACGAGTTCGACTTCATGATCGTGG
ATGTTTTCGGGCCGGAGTGGGAGAAAAACGACGAGGCCAAAGCTGTCCAC
ACCTGGTGAGAGAGGGGAACATGTTGAAACGGACACAAAAGCACGTGAAG
AGATACCAAGCTTTATCGATCGTATTCAATAATCTCGTGCTATTTTTCCC
GCTTACCTCTGCTGTGTTTTCGTTGTGAGAGCGGCTGCAACCGGCCGAAA
TCTGAACAAGAAACACCGCCCAATCACAAGCAAGAGGGACCACCGACCAG
AGGGTCTCTGCGAGTGAAACATGCAGTTCGTATCTCATGCATGTTGCCCG
CCGTGTACAACAAACAGGTTCCACGAGAGAGACGATGCCCTGCTTGGTTT
TCCCGAGATGGACATAGATGCCTGGTCTGCCTTTGTGTCCGCGAACCTTC
AGATCCAAGCCCCCGCGGTCCACACACGGCTGGTCCTCCAGAAAAAGGTG
TGGTGGGTTTGAGTCGCATAGGAAGAGCCGAGAGTGGATGAAAAACATAT
ATTTTCGCATTCTACCTTTGACAAGGTGCTCAAGAATTTGAAGCATCTAG
AGGAGACAACCCGATGTACACTGTCAGGTGTTTTGGGTAAAATCCGTAGA
GGAACGGCAGCAGTGAACATGGTTTTTCTGACCAGCCCGAGGGTTGTTCG
TATTTAACGGTAGGAGGCACAACCAACTAAATGTCTCAAGGGCACGTCGA
GTCGTTCAAGCAGCGCGCAAGCAACAAGAATACGAGGGGAACGCTTTCTC
CGGATAACGACCTACGTTCCGAGTATCGTGGTTGTCTGGTATCACGTCCA
ATTCTCGGTCTTTGAACAGAAAAACCCGGATATCTATCGTATTGCTGAGG
TTTCGTGCTTGTTGCCGCACATCGCCGCGTGGTAACACCAACAACCTCTC
TCTCGCAACAAGGTGCTCGGTGTCGGCTTCTGGACTCACTGCCTGCGGAA
GAGTATGACGATCTTCTTGGGACGCACGGCTACCGTCGAGCAAATCCTCA
GCGCGCATGTGTCCCCGAACGTTCTCGAGGAGCTCGCGCAGGACAGGAGG
CTAGAGCTGGACCACGACGACAGCACACAGTTCAACCTCCGGGTGAGAAA
GACGGAAAAAGCAGCACCATGTACATTCGCCCCGCCTTTGCTGTGGCCGC
GGGCTCCTTGTTCCTGCCTCTGTGAAGCGTTTTATTTAATCGTGGCTGCC
GTGATACCTACTACGTGTGCAGAGAGAGAGAGAAGGAGAGAGAGAGAAGG
AGAGAGAGAGAAGGAGAGAGAGAGAAGGAGAGAGAGAGAAGGGGAGAGAG
AGAGAGAGGCATCTGGAATGATTCTCCGCTTGAGCTCTCATCAACCTCTT
ACTGGCAAACCAAAACCAGGTCATTCGCCGAACAGGACCATTTCCCCAGC
GAAGAAAATACAGAGATACGGCAGGGAAAAGGCTGAGAGCAAAGGCGGCG
GCAGCGGTCGGGGCGGTGGCGGCAGACAACGTGAAAAAATTCGCCACGTT
GACGGTGCGGGAGGTCTTCGAGAGAGTCACCGTGCCGGCCGGCCAGGATG
CAACGTGGGAAGAGCCTAAACCACCGTCGACGCTTCAGGTGCGGGGGGTG
ACCATGCACGAGTATCCAGCACGCACATTCGGATATAATATTTCATTGGG
AACATTAGGTATTATCATGCTCTTCGCCGTACGAAGGAGACTCAGGCACG
CAACATTTCGTGCCCCATCGTCCACTTTTCTTCACTCTTAGACACATTCA
CCCGCCCATAGAACAAGCTCTCTTGCTTTAACGTTGTACTGCGCAACAAC
ATCAACGATAGCACCATAAATAGGTGCACGCCTTCCCGGTCGTATTTGGT
CAGGCGCTCATGGCAAGCCTGACGGCCATCGTCGAGCGCGCACCACCGGA
CGGGGCGCCGGCCGCCGGCAGCAACGCCTCACCATCCCTCTCACGGAGCC
CGGCGTCAAGATCACCAACCTCCTCCAAGAAAAGGAAAAACAAAAAGAAA
GGGGCTCCGCCCGATGCGCTTGCCCTGCTCAAGAACCGTCCCGGTATTGA
CGGAGTCCCTCTCGGATCGCCGGCGGCCGCCCCCTCGTCGCCGACCGGCT
CGGCGGTTGACGCAGACCCGGCCATCGCGAACGCCTTCTACGGACTGAAA
CCCTTGCCGGAGGCGGTGGCACCGGTAAGCCCGTCGGCCGCCGCCGGCTC
GGGGAGGGACCGGGCCAAGACGGCGGCGCGGACGGTGAAGAAGGGGGGGT
CCCCGGCGGCATCGTCACCGGGGGGATCGAGAGCCGTGGGGGGGGGGAAG
ACCACCCTCTCGAGGACCGGCAAGGAGCTCGTTGGTGCCGGAGAGGTTGG
GTGCGTCGGTGTCCGGGGGGGGGGGGCGGGACGGGGGCGCTGAGCGCCCG
GTTGCTCGGAGGGGCCACCGGCGGCCGCAGTGGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig917:2938..6621-

>mRNA_Ecto-sp8_S_contig917.30513.1 ID=mRNA_Ecto-sp8_S_contig917.30513.1|Name=mRNA_Ecto-sp8_S_contig917.30513.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1614bp|location=Sequence derived from alignment at Ecto-sp8_S_contig917:2938..6621- (Ectocarpus species8 EcLAC_412)
ATGGGAGCGGCGGCGAGCCTGGTTACAGAAGACCAACGAGCTAGCCTGCA
CGTCGCCGTCCTTCAAGTCCTTCCATCTGTGGTGTATGCCCTGGAGGAGA
GGAGATTCAAAGCTGGCTGTTTTTATGAGACACCGGAGTTCGCCCAACAA
AAAGAACTCTGTCCCATTTTTGCCGCGCTTGGGCTCCACGAATGGAGTAT
TTCGCACTTGTGGCGACACTTCCGTCAGATGAATGAGACGGGGAGCGGTA
CGGTGACAATGTGGGAGTTCCGAGAGTACTTCGACCTACCAGACGACCGC
TCCACTACAAGGCTTTTCCGCTGCTTCGACGAGGATCGCGACAACAGGAT
TGGCTTCCTGGAGCTAGTCGTGGGCATGTGGACATACTGCTGCAACTGCA
ATGCTTCAGTGGTGTGCCTATGCTTCGACCTGCTAGACATGGACCACAAC
GGGAAGATCGGGGCCGACGAGTTCGACTTCATGATCGTGGATGTTTTCGG
GCCGGAGTGGGAGAAAAACGACGAGGCCAAAGCTGTCCACACCTGGTTCC
ACGAGAGAGACGATGCCCTGCTTGGTTTTCCCGAGATGGACATAGATGCC
TGGTCTGCCTTTGTGTCCGCGAACCTTCAGATCCAAGCCCCCGCGGTCCA
CACACGGCTGGTCCTCCAGAAAAAGGTGCTCGGTGTCGGCTTCTGGACTC
ACTGCCTGCGGAAGAGTATGACGATCTTCTTGGGACGCACGGCTACCGTC
GAGCAAATCCTCAGCGCGCATGTGTCCCCGAACGTTCTCGAGGAGCTCGC
GCAGGACAGGAGGCTAGAGCTGGACCACGACGACAGCACACAGTTCAACC
TCCGGGTCATTCGCCGAACAGGACCATTTCCCCAGCGAAGAAAATACAGA
GATACGGCAGGGAAAAGGCTGAGAGCAAAGGCGGCGGCAGCGGTCGGGGC
GGTGGCGGCAGACAACGTGAAAAAATTCGCCACGTTGACGGTGCGGGAGG
TCTTCGAGAGAGTCACCGTGCCGGCCGGCCAGGATGCAACGTGGGAAGAG
CCTAAACCACCGTCGACGCTTCAGGCGCTCATGGCAAGCCTGACGGCCAT
CGTCGAGCGCGCACCACCGGACGGGGCGCCGGCCGCCGGCAGCAACGCCT
CACCATCCCTCTCACGGAGCCCGGCGTCAAGATCACCAACCTCCTCCAAG
AAAAGGAAAAACAAAAAGAAAGGGGCTCCGCCCGATGCGCTTGCCCTGCT
CAAGAACCGTCCCGGTATTGACGGAGTCCCTCTCGGATCGCCGGCGGCCG
CCCCCTCGTCGCCGACCGGCTCGGCGGTTGACGCAGACCCGGCCATCGCG
AACGCCTTCTACGGACTGAAACCCTTGCCGGAGGCGGTGGCACCGGTAAG
CCCGTCGGCCGCCGCCGGCTCGGGGAGGGACCGGGCCAAGACGGCGGCGC
GGACGGTGAAGAAGGGGGGGTCCCCGGCGGCATCGTCACCGGGGGGATCG
AGAGCCGTGGGGGGGGGGAAGACCACCCTCTCGAGGACCGGCAAGGAGCT
CGTTGGTGCCGGAGAGGTTGGGTGCGTCGGTGTCCGGGGGGGGGGGGCGG
GACGGGGGCGCTGA
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