mRNA_Ecto-sp8_S_contig913.30444.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: D8LSC4_ECTSI (U2 small nuclear ribonucleoprotein A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC4_ECTSI) HSP 1 Score: 553 bits (1425), Expect = 5.200e-192 Identity = 410/436 (94.04%), Postives = 413/436 (94.72%), Query Frame = 3
Query: 261 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGXXXXXXXXXXXXXXXXXXXXXXXXXXTEVEKASPQTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDVDGAEEGKTAEAPVPAADAENGEAEEXXXXXXEAGQGGEGKEXXXXXXXXXXXXXXXXXMVDDEGGEXAAAETAEETATEAPAETGEGEGDMEQEEGGGPKLSEAEIKSYK 1568
MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGT LPNLSCLILTNNKLSTLAELKGLGTC KLTMLSLLHNEVVNKQYYRLYMINL+PSLKQLDFQKVTVKERESA RLARSQAGQAMIQDVA+QAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGXXXXXXXXXXXXXXXXXXXXXXXXXXTEVE ASPQTA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDVDGAEEGKTAEAPVP ADA NGEAEE EAG+GGEGK XXXXXXXXXXXXXXXXX X AAETAEETATEAPAETGEGEGDMEQEEGGGPKLSEAEIKSYK
Sbjct: 1 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLIPSLKQLDFQKVTVKERESAVRLARSQAGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGXXXXXXXXXXXXXXXXXXXXXXXXXXTEVEMASPQTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDVDGAEEGKTAEAPVPGADAGNGEAEEEPPATSEAGRGGEGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAETAEETATEAPAETGEGEGDMEQEEGGGPKLSEAEIKSYK 436
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: A0A6H5L3Q9_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q9_9PHAE) HSP 1 Score: 279 bits (714), Expect = 1.240e-86 Identity = 260/340 (76.47%), Postives = 267/340 (78.53%), Query Frame = 3
Query: 552 KLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGXXXXXXXXXXXXXXXXXXXXXXXXXXTEVEKASPQTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDVDGAEEGKTAEAPVPAADAENGEAEEXXXXXXEAGQGGEGKEXXXXXXXXXXXXXXXXXMVDDEGGEXAAAETAEETATEAPAETGEGEGDMEQEEGGGPKLSEAEIKSYKV 1571
+LSTLAELKGLGTC KLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVK AGQAMIQDVA+QAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGXXXXXXXXXXXXXXXXXXXXXXXX TEVE ASPQTA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDVDGAEEGKTAEAP A + G A+ G+GG V DEGGE PAETGEGEGDMEQE+GGGPKLSEA+IKSYKV
Sbjct: 2 QLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVK------------AGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGXXXXXXXXXXXXXXXXXXXXXXXXT-TEVEMASPQTASPHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDVDGAEEGKTAEAPE--ASSAKGGAD---------GRGG------------------GDARVGDEGGEEXXXXXXXXXXXXXPAETGEGEGDMEQEDGGGPKLSEADIKSYKV 299
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: A0A835ZE59_9STRA (Leucine-rich repeat-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE59_9STRA) HSP 1 Score: 242 bits (617), Expect = 2.850e-70 Identity = 134/230 (58.26%), Postives = 168/230 (73.04%), Query Frame = 3
Query: 261 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPS 950
MRLTAD+I+ ARAS+N ERELDLRG+KIP+IEN+GVTQDQFD +DFSDNEI+KLDNFPR RL++LLL NN +++I +D+G LPNLSCL+LTNN +S L+EL LG C +LTMLSLL N V Q+YRLY+I+ +PSLK LDF KV +ER A RL +S AG+AM +D+A QA KTF PG A LT R I +A T EEI+ L + ++AGI P+
Sbjct: 1 MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQA---KTFVPGGAA--RAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPA 225
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: A0A7S3XKJ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKJ1_HETAK) HSP 1 Score: 229 bits (585), Expect = 1.910e-66 Identity = 126/235 (53.62%), Postives = 169/235 (71.91%), Query Frame = 3
Query: 261 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPGAPAAEEQK-LTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYK 962
MRLTAD+I+ A A+INPC ERELDLRGYKIP+IEN+G TQD FD +DFSDNEIKKL+NFPR +RL++LL NNH+SKI+E + +PNLS L ++ LAEL L KLT+LSLL N VV +Q+YRLY+I+ P+LK LDF+KV +ER+ AARL +S+AGQ M DV ++ KTF G E+K LT++ + + + I ATT EE++ L ++++AGI+P+ K
Sbjct: 1 MRLTADVILRADATINPCKERELDLRGYKIPVIENVGATQDMFDTIDFSDNEIKKLENFPRMERLTTLLFNNNHISKIAESIKDQVPNLSTLXXXXXRIQHLAELDSLQGLRKLTLLSLLENPVVRRQHYRLYVIHRCPALKYLDFRKVKQQERQEAARLFKSKAGQQMQDDVQKEI---KTFQAGEKQEREKKRLTEDQKNLIREAIKNATTPEEVDKLERQLKAGIMPNLAQK 232
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: A0A7S2G9L1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G9L1_9STRA) HSP 1 Score: 214 bits (544), Expect = 5.700e-62 Identity = 123/240 (51.25%), Postives = 162/240 (67.50%), Query Frame = 3
Query: 261 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPG----------APAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPS 950
+RLTAD+ HA +N C ERELDLRG KIP IEN+GVTQDQFD +DF+DNEIK++DNFP +KRLS+LLL NNHV+++S L LPNL CL L+E+ L C KLTMLS ++N ++ +Q+YRLY+I +P LK LDF KV ERE AA+L RS AG+ M QDV ++ KTFTPG A EQK D+ RA+ IA A+T EE++ + ++++AG+IP+
Sbjct: 2 VRLTADVFAHAVPRMNCCQERELDLRGLKIPAIENVGVTQDQFDVLDFTDNEIKRVDNFPTFKRLSTLLLSNNHVTRLSPTLSEQLPNLDCLXXXXXXXXNLSEVDNLIGCTKLTMLSFVNNPIIRRQHYRLYVIAKLPQLKALDFVKVKAIEREEAAKLFRSAAGRLMQQDVEAES---KTFTPGEDIPSTTNPMANLTAEQK--DQVRAV----IAAASTPEEVDRIERQLKAGVIPT 232
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: A0A3Q3N132_9LABR (Small nuclear ribonucleoprotein polypeptide A' n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3N132_9LABR) HSP 1 Score: 211 bits (537), Expect = 1.490e-61 Identity = 116/239 (48.54%), Postives = 162/239 (67.78%), Query Frame = 3
Query: 261 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPGAPAAEEQKLTDEHRA---IYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 968
++LTA++I A NP +RELDLRGYKIP++ENLG T DQFD +DFSDNEI+KLD FP KRL +LL+ NN + ++ E+L +LP L+ LILTNN + L +L L T LT+LSLL N V NK++YRLYMIN +P ++ LDFQKV KER+ A ++ + + G + +D+A+ + KTFTPG PA E+K T +A + IA A+++ E+E L +QAG IP + ++G
Sbjct: 2 VKLTAELIEQAAQYTNPVRDRELDLRGYKIPVLENLGATLDQFDTVDFSDNEIRKLDGFPLLKRLKTLLMNNNRICRVGENLEQSLPCLTELILTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYMINKIPQIRVLDFQKVKQKERQEAEKMFKGKRGAQLAKDIAK---RTKTFTPGVPAQLEKKKTGPSQADVEAIKNAIANASSLAEVERLKGMLQAGQIPGRDLREG 237
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: A0A7S2F7F7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F7F7_9STRA) HSP 1 Score: 215 bits (548), Expect = 6.490e-61 Identity = 117/234 (50.00%), Postives = 163/234 (69.66%), Query Frame = 3
Query: 261 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAE----KAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPS 950
MRLT+D++++A A +NPC ERELDLRG KIP IEN+GVTQD +D +DF+DNEIKKL+NFP KRLS LLL NNHV I+ ++ +P+L L+LTNNK++ L+E+ L CA LT LSLL N V+ +Q+YR Y+I+ +P LK LDF K+ KER+ A RL RS AG+ M +DV + E +A+T T +L + RA IA A+T +EI+ + ++++AGI+P+
Sbjct: 1 MRLTSDVLLNAHARLNPCSERELDLRGLKIPAIENIGVTQDLYDTLDFTDNEIKKLENFPNTKRLSCLLLSNNHVKIINPEISEKIPSLRTLVLTNNKITNLSEVDNLAACANLTELSLLSNPVIRRQHYRFYVISKLPQLKVLDFSKIKPKERQEAERLFRSAAGKLMQEDVLKSKEIETDEAETATHNMA-----QLNEVDRAQVRAAIAAASTPQEIDRIERQLKAGILPT 229
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: A0A0U2IG20_ACAPC (U2 small nuclear ribonucleoprotein A n=1 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2IG20_ACAPC) HSP 1 Score: 209 bits (532), Expect = 1.480e-60 Identity = 122/245 (49.80%), Postives = 164/245 (66.94%), Query Frame = 3
Query: 261 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPGAP--------AAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG 971
++ T D+I A INP +RELDLRGYKIP+IENLG T DQFD +D SDNE++KLD FP+ RL +LLL NN + +++E L LPNL+ L++TNN L LA+L+ L T KL M+SLLHN VV K+ YRLY+I+ PSLK LDF+K+ +KERE+A L +++ G+ ++D+ QA KAKTF PGAP AA LT E IAKA ++EEIE L++ ++ G +P + GG
Sbjct: 2 VKCTPDLIEGAGQYINPVRDRELDLRGYKIPVIENLGSTLDQFDCIDLSDNEVRKLDGFPQLNRLKTLLLNNNRIVRVAEGLELNLPNLNTLVMTNNSLQELADLEPLTTMKKLEMMSLLHNPVVTKRNYRLYVIHKFPSLKVLDFKKIKMKEREAAKALFKTKEGKTQLKDI--QA-KAKTFVPGAPLPEATNNKAANPAGLTPEQVKNIKTMIAKAKSLEEIERLNQMLRTGKMPGEASENGG 243
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: A0A0K2V8V0_LEPSM (Small nuclear ribonucleoprotein polypeptide A' [Latimeria chalumnae] n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2V8V0_LEPSM) HSP 1 Score: 209 bits (531), Expect = 1.830e-60 Identity = 117/243 (48.15%), Postives = 167/243 (68.72%), Query Frame = 3
Query: 261 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRI-------AKATTVEEIEMLSKKIQAGIIPSANYKQG 968
++LT D+I + INP +RELDLRGYKIP+IENLG T DQFD +DFSDNEI++LDNFP RL +L NN + +I +++ +LPNL+ LILTNN L LA+L+ L LT LSL+ N V++K YRLY+I+ +P+L+ LDF+KV +KERE A +S+ G+ +++++ ++A AKTFTPGAP A+E K ++ + D+I A+ATT+EEIE L++ ++ G IP Y G
Sbjct: 2 VKLTPDLIEGSAQYINPVRDRELDLRGYKIPVIENLGATLDQFDCIDFSDNEIRQLDNFPFLPRLKTLFFNNNRIIRIGDNINESLPNLNSLILTNNSLQELADLERLAKIKSLTNLSLMSNPVISKPDYRLYLIHKLPNLRMLDFRKVKLKEREEAKAKFKSEEGKKVLKEIKKRA--AKTFTPGAPLADESKKENQPHGLNPDQIRNIKAAIARATTLEEIERLNQMLRTGQIPGT-YSNG 241
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: A0A3Q1EK11_9TELE (Small nuclear ribonucleoprotein polypeptide A' n=6 Tax=Euacanthomorphacea TaxID=123369 RepID=A0A3Q1EK11_9TELE) HSP 1 Score: 208 bits (529), Expect = 2.270e-60 Identity = 113/239 (47.28%), Postives = 162/239 (67.78%), Query Frame = 3
Query: 261 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPGAPAAEEQKLTDEHRA---IYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 968
++L+A++I A NP +RELDLRGYKIP++ENLG T DQFD +DFSDNEI+KLD FP +RL +LL+ NN + +I E+L +LP+L+ L+LTNN + L +L L T LT+LSLL N V NK++YRLY+IN +P ++ LDFQKV +KER+ A ++ + + G + +D+A + KTFTPG A E+K T +A + IA A+++ E+E L +QAG IP + +QG
Sbjct: 2 VKLSAELIEQAAQYTNPVRDRELDLRGYKIPVLENLGATLDQFDTVDFSDNEIRKLDGFPLLRRLKTLLMNNNRICRIGENLEQSLPSLTELVLTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYVINKIPQIRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIAR---RTKTFTPGVAAQPEKKRTGPSQADVDAIKNAIANASSLAEVERLKGMLQAGQIPGRDLRQG 237 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig913.30444.1 >prot_Ecto-sp8_S_contig913.30444.1 ID=prot_Ecto-sp8_S_contig913.30444.1|Name=mRNA_Ecto-sp8_S_contig913.30444.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=437bp MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDback to top mRNA from alignment at Ecto-sp8_S_contig913:10399..16118- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig913.30444.1 ID=mRNA_Ecto-sp8_S_contig913.30444.1|Name=mRNA_Ecto-sp8_S_contig913.30444.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5720bp|location=Sequence derived from alignment at Ecto-sp8_S_contig913:10399..16118- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig913:10399..16118- >mRNA_Ecto-sp8_S_contig913.30444.1 ID=mRNA_Ecto-sp8_S_contig913.30444.1|Name=mRNA_Ecto-sp8_S_contig913.30444.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1311bp|location=Sequence derived from alignment at Ecto-sp8_S_contig913:10399..16118- (Ectocarpus species8 EcLAC_412)back to top |