mRNA_Ecto-sp8_S_contig913.30444.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig913.30444.1
Unique NamemRNA_Ecto-sp8_S_contig913.30444.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: D8LSC4_ECTSI (U2 small nuclear ribonucleoprotein A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC4_ECTSI)

HSP 1 Score: 553 bits (1425), Expect = 5.200e-192
Identity = 410/436 (94.04%), Postives = 413/436 (94.72%), Query Frame = 3
Query:  261 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGXXXXXXXXXXXXXXXXXXXXXXXXXXTEVEKASPQTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDVDGAEEGKTAEAPVPAADAENGEAEEXXXXXXEAGQGGEGKEXXXXXXXXXXXXXXXXXMVDDEGGEXAAAETAEETATEAPAETGEGEGDMEQEEGGGPKLSEAEIKSYK 1568
            MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGT LPNLSCLILTNNKLSTLAELKGLGTC KLTMLSLLHNEVVNKQYYRLYMINL+PSLKQLDFQKVTVKERESA RLARSQAGQAMIQDVA+QAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGXXXXXXXXXXXXXXXXXXXXXXXXXXTEVE ASPQTA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDVDGAEEGKTAEAPVP ADA NGEAEE      EAG+GGEGK XXXXXXXXXXXXXXXXX        X AAETAEETATEAPAETGEGEGDMEQEEGGGPKLSEAEIKSYK
Sbjct:    1 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLIPSLKQLDFQKVTVKERESAVRLARSQAGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGXXXXXXXXXXXXXXXXXXXXXXXXXXTEVEMASPQTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDVDGAEEGKTAEAPVPGADAGNGEAEEEPPATSEAGRGGEGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAETAEETATEAPAETGEGEGDMEQEEGGGPKLSEAEIKSYK 436          
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: A0A6H5L3Q9_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q9_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 1.240e-86
Identity = 260/340 (76.47%), Postives = 267/340 (78.53%), Query Frame = 3
Query:  552 KLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGXXXXXXXXXXXXXXXXXXXXXXXXXXTEVEKASPQTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDVDGAEEGKTAEAPVPAADAENGEAEEXXXXXXEAGQGGEGKEXXXXXXXXXXXXXXXXXMVDDEGGEXAAAETAEETATEAPAETGEGEGDMEQEEGGGPKLSEAEIKSYKV 1571
            +LSTLAELKGLGTC KLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVK            AGQAMIQDVA+QAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGXXXXXXXXXXXXXXXXXXXXXXXX  TEVE ASPQTA    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDVDGAEEGKTAEAP   A +  G A+         G+GG                      V DEGGE              PAETGEGEGDMEQE+GGGPKLSEA+IKSYKV
Sbjct:    2 QLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVK------------AGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGXXXXXXXXXXXXXXXXXXXXXXXXT-TEVEMASPQTASPHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDVDGAEEGKTAEAPE--ASSAKGGAD---------GRGG------------------GDARVGDEGGEEXXXXXXXXXXXXXPAETGEGEGDMEQEDGGGPKLSEADIKSYKV 299          
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: A0A835ZE59_9STRA (Leucine-rich repeat-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE59_9STRA)

HSP 1 Score: 242 bits (617), Expect = 2.850e-70
Identity = 134/230 (58.26%), Postives = 168/230 (73.04%), Query Frame = 3
Query:  261 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPS 950
            MRLTAD+I+ ARAS+N   ERELDLRG+KIP+IEN+GVTQDQFD +DFSDNEI+KLDNFPR  RL++LLL NN +++I +D+G  LPNLSCL+LTNN +S L+EL  LG C +LTMLSLL N V   Q+YRLY+I+ +PSLK LDF KV  +ER  A RL +S AG+AM +D+A QA   KTF PG  A     LT   R      I +A T EEI+ L + ++AGI P+
Sbjct:    1 MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERARAERLFQSAAGRAMEEDIALQA---KTFVPGGAA--RAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPA 225          
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: A0A7S3XKJ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKJ1_HETAK)

HSP 1 Score: 229 bits (585), Expect = 1.910e-66
Identity = 126/235 (53.62%), Postives = 169/235 (71.91%), Query Frame = 3
Query:  261 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPGAPAAEEQK-LTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYK 962
            MRLTAD+I+ A A+INPC ERELDLRGYKIP+IEN+G TQD FD +DFSDNEIKKL+NFPR +RL++LL  NNH+SKI+E +   +PNLS L     ++  LAEL  L    KLT+LSLL N VV +Q+YRLY+I+  P+LK LDF+KV  +ER+ AARL +S+AGQ M  DV ++    KTF  G     E+K LT++ + +  + I  ATT EE++ L ++++AGI+P+   K
Sbjct:    1 MRLTADVILRADATINPCKERELDLRGYKIPVIENVGATQDMFDTIDFSDNEIKKLENFPRMERLTTLLFNNNHISKIAESIKDQVPNLSTLXXXXXRIQHLAELDSLQGLRKLTLLSLLENPVVRRQHYRLYVIHRCPALKYLDFRKVKQQERQEAARLFKSKAGQQMQDDVQKEI---KTFQAGEKQEREKKRLTEDQKNLIREAIKNATTPEEVDKLERQLKAGIMPNLAQK 232          
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: A0A7S2G9L1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G9L1_9STRA)

HSP 1 Score: 214 bits (544), Expect = 5.700e-62
Identity = 123/240 (51.25%), Postives = 162/240 (67.50%), Query Frame = 3
Query:  261 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPG----------APAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPS 950
            +RLTAD+  HA   +N C ERELDLRG KIP IEN+GVTQDQFD +DF+DNEIK++DNFP +KRLS+LLL NNHV+++S  L   LPNL CL         L+E+  L  C KLTMLS ++N ++ +Q+YRLY+I  +P LK LDF KV   ERE AA+L RS AG+ M QDV  ++   KTFTPG          A    EQK  D+ RA+    IA A+T EE++ + ++++AG+IP+
Sbjct:    2 VRLTADVFAHAVPRMNCCQERELDLRGLKIPAIENVGVTQDQFDVLDFTDNEIKRVDNFPTFKRLSTLLLSNNHVTRLSPTLSEQLPNLDCLXXXXXXXXNLSEVDNLIGCTKLTMLSFVNNPIIRRQHYRLYVIAKLPQLKALDFVKVKAIEREEAAKLFRSAAGRLMQQDVEAES---KTFTPGEDIPSTTNPMANLTAEQK--DQVRAV----IAAASTPEEVDRIERQLKAGVIPT 232          
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: A0A3Q3N132_9LABR (Small nuclear ribonucleoprotein polypeptide A' n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3N132_9LABR)

HSP 1 Score: 211 bits (537), Expect = 1.490e-61
Identity = 116/239 (48.54%), Postives = 162/239 (67.78%), Query Frame = 3
Query:  261 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPGAPAAEEQKLTDEHRA---IYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 968
            ++LTA++I  A    NP  +RELDLRGYKIP++ENLG T DQFD +DFSDNEI+KLD FP  KRL +LL+ NN + ++ E+L  +LP L+ LILTNN +  L +L  L T   LT+LSLL N V NK++YRLYMIN +P ++ LDFQKV  KER+ A ++ + + G  + +D+A+   + KTFTPG PA  E+K T   +A      + IA A+++ E+E L   +QAG IP  + ++G
Sbjct:    2 VKLTAELIEQAAQYTNPVRDRELDLRGYKIPVLENLGATLDQFDTVDFSDNEIRKLDGFPLLKRLKTLLMNNNRICRVGENLEQSLPCLTELILTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYMINKIPQIRVLDFQKVKQKERQEAEKMFKGKRGAQLAKDIAK---RTKTFTPGVPAQLEKKKTGPSQADVEAIKNAIANASSLAEVERLKGMLQAGQIPGRDLREG 237          
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: A0A7S2F7F7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F7F7_9STRA)

HSP 1 Score: 215 bits (548), Expect = 6.490e-61
Identity = 117/234 (50.00%), Postives = 163/234 (69.66%), Query Frame = 3
Query:  261 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAE----KAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPS 950
            MRLT+D++++A A +NPC ERELDLRG KIP IEN+GVTQD +D +DF+DNEIKKL+NFP  KRLS LLL NNHV  I+ ++   +P+L  L+LTNNK++ L+E+  L  CA LT LSLL N V+ +Q+YR Y+I+ +P LK LDF K+  KER+ A RL RS AG+ M +DV +  E    +A+T T         +L +  RA     IA A+T +EI+ + ++++AGI+P+
Sbjct:    1 MRLTSDVLLNAHARLNPCSERELDLRGLKIPAIENIGVTQDLYDTLDFTDNEIKKLENFPNTKRLSCLLLSNNHVKIINPEISEKIPSLRTLVLTNNKITNLSEVDNLAACANLTELSLLSNPVIRRQHYRFYVISKLPQLKVLDFSKIKPKERQEAERLFRSAAGKLMQEDVLKSKEIETDEAETATHNMA-----QLNEVDRAQVRAAIAAASTPQEIDRIERQLKAGILPT 229          
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: A0A0U2IG20_ACAPC (U2 small nuclear ribonucleoprotein A n=1 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2IG20_ACAPC)

HSP 1 Score: 209 bits (532), Expect = 1.480e-60
Identity = 122/245 (49.80%), Postives = 164/245 (66.94%), Query Frame = 3
Query:  261 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPGAP--------AAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG 971
            ++ T D+I  A   INP  +RELDLRGYKIP+IENLG T DQFD +D SDNE++KLD FP+  RL +LLL NN + +++E L   LPNL+ L++TNN L  LA+L+ L T  KL M+SLLHN VV K+ YRLY+I+  PSLK LDF+K+ +KERE+A  L +++ G+  ++D+  QA KAKTF PGAP        AA    LT E        IAKA ++EEIE L++ ++ G +P    + GG
Sbjct:    2 VKCTPDLIEGAGQYINPVRDRELDLRGYKIPVIENLGSTLDQFDCIDLSDNEVRKLDGFPQLNRLKTLLLNNNRIVRVAEGLELNLPNLNTLVMTNNSLQELADLEPLTTMKKLEMMSLLHNPVVTKRNYRLYVIHKFPSLKVLDFKKIKMKEREAAKALFKTKEGKTQLKDI--QA-KAKTFVPGAPLPEATNNKAANPAGLTPEQVKNIKTMIAKAKSLEEIERLNQMLRTGKMPGEASENGG 243          
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: A0A0K2V8V0_LEPSM (Small nuclear ribonucleoprotein polypeptide A' [Latimeria chalumnae] n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2V8V0_LEPSM)

HSP 1 Score: 209 bits (531), Expect = 1.830e-60
Identity = 117/243 (48.15%), Postives = 167/243 (68.72%), Query Frame = 3
Query:  261 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRI-------AKATTVEEIEMLSKKIQAGIIPSANYKQG 968
            ++LT D+I  +   INP  +RELDLRGYKIP+IENLG T DQFD +DFSDNEI++LDNFP   RL +L   NN + +I +++  +LPNL+ LILTNN L  LA+L+ L     LT LSL+ N V++K  YRLY+I+ +P+L+ LDF+KV +KERE A    +S+ G+ +++++ ++A  AKTFTPGAP A+E K  ++   +  D+I       A+ATT+EEIE L++ ++ G IP   Y  G
Sbjct:    2 VKLTPDLIEGSAQYINPVRDRELDLRGYKIPVIENLGATLDQFDCIDFSDNEIRQLDNFPFLPRLKTLFFNNNRIIRIGDNINESLPNLNSLILTNNSLQELADLERLAKIKSLTNLSLMSNPVISKPDYRLYLIHKLPNLRMLDFRKVKLKEREEAKAKFKSEEGKKVLKEIKKRA--AKTFTPGAPLADESKKENQPHGLNPDQIRNIKAAIARATTLEEIERLNQMLRTGQIPGT-YSNG 241          
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Match: A0A3Q1EK11_9TELE (Small nuclear ribonucleoprotein polypeptide A' n=6 Tax=Euacanthomorphacea TaxID=123369 RepID=A0A3Q1EK11_9TELE)

HSP 1 Score: 208 bits (529), Expect = 2.270e-60
Identity = 113/239 (47.28%), Postives = 162/239 (67.78%), Query Frame = 3
Query:  261 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLSTLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPGAPAAEEQKLTDEHRA---IYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQG 968
            ++L+A++I  A    NP  +RELDLRGYKIP++ENLG T DQFD +DFSDNEI+KLD FP  +RL +LL+ NN + +I E+L  +LP+L+ L+LTNN +  L +L  L T   LT+LSLL N V NK++YRLY+IN +P ++ LDFQKV +KER+ A ++ + + G  + +D+A    + KTFTPG  A  E+K T   +A      + IA A+++ E+E L   +QAG IP  + +QG
Sbjct:    2 VKLSAELIEQAAQYTNPVRDRELDLRGYKIPVLENLGATLDQFDTVDFSDNEIRKLDGFPLLRRLKTLLMNNNRICRIGENLEQSLPSLTELVLTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYVINKIPQIRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIAR---RTKTFTPGVAAQPEKKRTGPSQADVDAIKNAIANASSLAEVERLKGMLQAGQIPGRDLRQG 237          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig913.30444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSC4_ECTSI5.200e-19294.04U2 small nuclear ribonucleoprotein A n=1 Tax=Ectoc... [more]
A0A6H5L3Q9_9PHAE1.240e-8676.47SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZE59_9STRA2.850e-7058.26Leucine-rich repeat-domain-containing protein n=1 ... [more]
A0A7S3XKJ1_HETAK1.910e-6653.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2G9L1_9STRA5.700e-6251.25Hypothetical protein (Fragment) n=2 Tax=Florenciel... [more]
A0A3Q3N132_9LABR1.490e-6148.54Small nuclear ribonucleoprotein polypeptide A' n=2... [more]
A0A7S2F7F7_9STRA6.490e-6150.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0U2IG20_ACAPC1.480e-6049.80U2 small nuclear ribonucleoprotein A n=1 Tax=Acart... [more]
A0A0K2V8V0_LEPSM1.830e-6048.15Small nuclear ribonucleoprotein polypeptide A' [La... [more]
A0A3Q1EK11_9TELE2.270e-6047.28Small nuclear ribonucleoprotein polypeptide A' n=6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig913contigEcto-sp8_S_contig913:10399..16118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score563.1
Seed ortholog evalue1.1e-157
Seed eggNOG ortholog2880.D8LSC4
Model size1571
KEGG koko:K11092
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.U2 snRNA binding
EggNOG OGsCOG4886@1,KOG1644@2759
Ec32 ortholog descriptionU2 small nuclear ribonucleoprotein A
Ec32 orthologEc-21_003190.1
Cds size1311
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig913.30444.1prot_Ecto-sp8_S_contig913.30444.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig913 10399..15858 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145262.3761094-CDS-Ecto-sp8_S_contig913:10398..110641681145262.3761094-CDS-Ecto-sp8_S_contig913:10398..11064Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig913 10399..11064 -
1681145262.39169-CDS-Ecto-sp8_S_contig913:11610..117991681145262.39169-CDS-Ecto-sp8_S_contig913:11610..11799Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig913 11611..11799 -
1681145262.4033322-CDS-Ecto-sp8_S_contig913:12329..124911681145262.4033322-CDS-Ecto-sp8_S_contig913:12329..12491Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig913 12330..12491 -
1681145262.4158132-CDS-Ecto-sp8_S_contig913:13062..132451681145262.4158132-CDS-Ecto-sp8_S_contig913:13062..13245Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig913 13063..13245 -
1681145262.4279761-CDS-Ecto-sp8_S_contig913:13982..140661681145262.4279761-CDS-Ecto-sp8_S_contig913:13982..14066Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig913 13983..14066 -
1681145262.4418006-CDS-Ecto-sp8_S_contig913:15831..158581681145262.4418006-CDS-Ecto-sp8_S_contig913:15831..15858Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig913 15832..15858 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145262.4557595-UTR-Ecto-sp8_S_contig913:15858..161181681145262.4557595-UTR-Ecto-sp8_S_contig913:15858..16118Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig913 15859..16118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig913.30444.1

>prot_Ecto-sp8_S_contig913.30444.1 ID=prot_Ecto-sp8_S_contig913.30444.1|Name=mRNA_Ecto-sp8_S_contig913.30444.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=437bp
MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSD
NEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTTLPNLSCLILTNNKLS
TLAELKGLGTCAKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVT
VKERESAARLARSQAGQAMIQDVAEQAEKAKTFTPGAPAAEEQKLTDEHR
AIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGGGAPAAANGAAAPA
AAAAPGKPPAATTTEVEKASPQTASPQEPPATAVAAAGKAAAPAAAPTET
GTAATAPEAPAAPAQAAPTETSSMDVDGAEEGKTAEAPVPAADAENGEAE
EEPPATSEAGQGGEGKEEASSAKGGADGGGGGDAMVDDEGGEEAAAETAE
ETATEAPAETGEGEGDMEQEEGGGPKLSEAEIKSYKV
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mRNA from alignment at Ecto-sp8_S_contig913:10399..16118-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig913.30444.1 ID=mRNA_Ecto-sp8_S_contig913.30444.1|Name=mRNA_Ecto-sp8_S_contig913.30444.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5720bp|location=Sequence derived from alignment at Ecto-sp8_S_contig913:10399..16118- (Ectocarpus species8 EcLAC_412)
ACTCCTTCAGCGCAATCTGATTGCACGGGCGACCAACACTGGATGCACGA ACCCCGACAAGCGCCATTGGAGGGAAAGCTGCTGTGGGATACCTCGCGCC AACGAGCATTTCTCGCTGGCGACGCGAATCCGAGAAAATCTAGAGGTTTC TCGATTTGGTGGGCGGGAAACCAGGGGGGGGGAGCTCTGGCTGTGGGCGG TGCAGACGATAGGCGTTAGCTGGAGATTGGCGGCGAGGGGGAAGAGGCAA GGGAGGAAAGATGCGGCTCACCGCTGACATAATCATGGTGAGCAAGAGCG TAGGTATTGAAGCGCGAGGCTGGTGTATCTGTAGCCGAAACGACGGCGGG GGGAGAGTAGGACCAAACGTAATGCAAACACAGCACAAGAGGTCAATTTT TCAAGCGGTGTTGTGCACCGCTGTTGTCATCGCTGTTGTTGGTGGATCCA CACGGGCACCGGGTGTCGGGGTGTCCTCCTCGCCCCTTGATCTTTTGATA TCCATGGCCTGCAACTTGCCTCTCTGTTGGTGAACATGGTCCCTGCACCC ACCTGCGTTTGTGATGCCAAAGTCCGTCACAGCAGTACAAAGACTTTCTG TAAAAGTGTCACGCTTCCTGAGAAAACTTGACGACGCCATATGGCCATGT CTCACTCACAACAGACTTTGAGTTTTAAAACCCCAAGTGGGGGGCGGTGT CTACTGCTGTGAGTGGGTAGGTCATGGTCTTGGAGCGCACGTCTACCATC TGTTGGATAGCAGCGAGTTATGCTCTGCTTAAAGACTGGCTGCGACAGGT AGAGATGGTTGGCGGCGATCTTGCATTGCTCTATAGGATGAAGCCTACAC AGCAGCACAGCGATCAGTCTCGTGCTGCAATTGTACAAAAGCGACTTTTC CATCCGTATGTATGTCTTGAGGGCACCCTGCCATTGCGGCGTCCCGCTGC ACCATGTAAACAGGAGTATCCATGCTGGTGCAGTTGAGATGTCTGAGGTA GGGCTCCCGGACCCCAGCAGTAAAAAATATGGATTTTTTTCGTCGTGATG ATCCGCGTGTCGCCATCGATGGTTGTATCGGGGTGTTCAGCCAACCTACA CCTCTCTTCGGTTCTCTCGGTTCTCGAAAGATAAGCTCCGTCACACAGCG TCGCCCCAGCGAAACGGTACCATTCACTGCTGTACCAGGTTGTACAAACA CCAGTTTCATGATGTTGATTAAGGCCGTACAAACTTTGTTGGGGCTGTCG GCGGGGGTCTTGCGGGCTGAACTGCTGGTGTGCTTTTTTTACTTCCCATG CGTGCTGCGGACACAAACAGCTTTGACCGTTAAGCTTTTCGCTGCGGTGT GTTCATGTACGAGGACTGTGGCACCACATGTCTGTCGGGTAGGTCCATCG TAGATGGTATTGCGAACAAAGCACCTAGCACCGGTCATACCTGCAAGGAT TCGGCAAGAACTGTCAAAGTTTTTATCTCGCCGTGTTTTTATCTCGCCAG CTGCTGTACCTAACGCCCGTCGGGGTTCCGTTCCTGGCCATCTGCTGCTA AACGGACGGTGGGTTGTCGCGCCGTGTGGCGTGATGCGTCCATGGGGGTA TAGTAGCAGATACTTGTTGATCAGGAGCGGAATATCAAGCAATATCGGGA GTAGCGCCAGTCGGAGCTGACTGATGATGAACTCTATTGGCATCAACACG GAGGAACCGTTCGACGAAACGGCCGGTGGTAGAGACAACAGTGAGGTTTG GCCAGTTTTTCGGGGGGGGGTTTCCCGCGCGTACAGACAACAGGAACGGG CATTTACCAGAATGATGCTGTGCACATGGACACCACTCTTCGGAATCCGC CCATTGATCGAATAGTCAACAAAGCCGGCCAACGCCCCCAAACCAACATG ATCGAATTTCCATCCACGTTTCATGTTTTTTTGCGCGTACCCTCCTCCGC CCGTCAACGCAATGCACCTGCTGTTACGAGGTCTGTGCTCATTGATTTCG GTGCCCTTCCCCTCTTGCGTGTCGTGTATTGCCCGGGCTGGGCTCGTTCC AGCACGCTCGTGCGAGCATCAACCCTTGCGACGAGCGAGAGCTGGACCTT CGCGGGTACAAAATCCCGATGATCGAGAACTTGGGGGTGAGAGACGAAAC ACGACCACGGGGCGGACGAGTAGCAGGGGGCGCGGGTGTGTTTACTCATA GTTGTGCCTGCCGTAGTCGTTAGACCATTGAATTCGCATCCCAACAAAGC ACGGACGGAGCATCCCGGGTTCCCACCGGACCAGGCTCTCAGGGAGGGGG TTTGCTCGTGTAACCGGCATGCCGTAGTCGTTAGAGCATTTACCTCGCAT CCCTACAATGTCGGGACGGAGCGATATGCCGGTTGCTCGCTGGCCCGGGC TACGTTTTGCAAGGATGAATCAGGACCTCGTCTTTATCCTTGCGTTTGCT GTGCCATCCAGATATACCATGGGTTGATTGAGGTATCCCGGCTAACCTAA CGTTTCACCATCGGCAGTAGCAGGGGGAAGGGGTTGGGAAAGAGACGGGG AGACAGAGAGAAAGAGGTGTGTGTGTGGGGGGGGGGGGGTGAAGGAAAGG CGAGGGGGGCTGCGGCAGAGCGACAAGGCACACGCTTTATATTTGTGGAC GTCATGTTGTTGTTGTTGTCGTTGTCCTTTATCGTCGTGGTTTTGCCTCT GCCGCTGATGCTGGTGCCGGATGCGGCGATTTCTTCGTGGCCGCTTCCGG TTTTTTAAGCGGACCTCTCGCATTTTTCTCCGCTGCGAGCGAATAAACGC CCTTTGCTGCTGGCACTCTCCCGGCTTGCGTGCGTACGTGCGTGGGCTTT GTTTATCTCCACGCGTAAACCAGGTGACCCAAGATCAGTTCGACGCGATG GACTTCTCGGACAACGAGATCAAGAAGCTAGACAACTTCCCCCGATACAA GCGCCTGTCGTCCCTCCTCCTCTGCAACAACCACGTCTCCAAGATTTCGG AAGACCTCGGCACTACTTTGCCGAACCTCTCCTGCCTGATACTCACCAAC AACAAGGTGAGCGGTAGATGTGGCGCGGGGGGCGTAGAGAGGACCGGGAC AAAGGTTCTTCGGTCCCGTCCTTGTCGCAGCAGATTACCAATCCGCGGGG CTTCATCGTGGAACGGAGAGGGGAGAAGGACGGGGCGAGCGGCGGATCGA AACGAGATATACGAAGAATAGCTCTGAATGCGTACAGCGGTGTAGTTTTT CTATTCTCAAGCCAGGAGGGAAGCCGCACTCCTCCTCCGTTCGTGTCTGT TCCGATTGTTTCGAAGTGGCTTCTTGTGGTTCGATGGTTCGACGATTCCT GGTGCTTCTTGCGGTAGATGGAAGTGGTGGTGTCGGTGGAACGCTAGGAA GAGAGGCGTGGCGTTTCTGCCTGCTGGTGCGCTGTTATAGTTGAGTAGCC ACGTTGTCGACCGCTCCTCGGGGTTCGATAACGCTGACAAACGAAAGTTT GGGGCTATCGTCCCGTAAAGGGGGCGGCGCTTGCAGAAATGATGACGAGA TCACCGATTAAGAGCTGCTAATATACACACAACGTCCCCGCGTCCGCCCT CACCCCCACCCTCCCCTCTATGTGCAGCTCTCCACGCTAGCGGAACTCAA GGGCCTTGGCACCTGCGCGAAGCTGACGATGCTCTCCTTGCTGCACAACG AGGTGGTAAACAAGCAGTACTACCGACTGTACATGATCAACCTCGTACCC AGCCTCAAGCAGCTGGATTTCCAGAAGGTCACGGTGAAGGTGAGGATGGC TTGGGTTTTGCCTCGAGCGGGGAGAGAAAAAGGGAGAGAGAAGGAAGATA CACGAAGAAGTTGTAGGCGCAGTTGTGCCGAAGTTTTTTCGCCTGGTCGT CGTGATTTCTCAAGGGCCCCGTTTCAAGCGGTGGTTGTGTGTGTGCGCGT TTTTTCCGTGTACCGGACCCCGGGCGCTGTAAATATGGCCGTGGTCGCTG TCGTTGGACCTGTTGTAATCTTGGTATTGTTTTGGTGCTTCAACCCCCTG CGCTTTTTGTGTCGCGTAGTTGGGACCGAACTCTTTCGCGTCGCGTCTTC TTGGTGCTCTTGAATTGGTGTATATTCACGCTTTAGCACGTGCGCGCGAG CTGTTCAATGGTCCGTTGGCCATCGACGAACCGTACGAAAAATAGCTCTT GAACGTGGAATTCGTTGTGCCTGGTGTCCCGAGAGGCACGCATGGTCACA TGACTTACTCCCAAACACCAAACAAGTGCCCCCCCCCCTCCCCCCCCCCG TTACATTTCTCATCGCCAGGAGCGAGAGTCGGCGGCCCGATTGGCCAGGT CACAGGCAGGGCAGGCGATGATACAGGACGTGGCGGAGCAGGCGGAGAAG GCTAAGACCTTCACGCCGGGCGCCCCCGCGGCGGAAGAGCAGAAGCTGAC AGACGAGCACCGAGCCATCTACGCCGATCGCATCGCGAAGGCCACCACGG TAGAGGAGGTGCGTTCTTTTCGGTTGGAGGGGGGGGTGGGTCATCGCGTG GGCGTGACGGCCGACGCGTTTTTTTCTCGCGCGCTGAGTGGTACAGGAGA GCAGGGTTTTTGCTTGTTTGACCACAGTACAAGCGTAGGAGGTGTGGATC GACGATTGTCCCCGCGTCCCCGCGTCCTCCTTCGAAACGGCGCCTCTTGC TCTTCCATGTATGCGTACAAGGTGAATGCACCGCCTCCTGTGGGCGGGGA GCCCTTTCCACCTCTTTAATGCTCTGCCCTCCGGGGTAGGGCTTGCAATG GGCATGTCCCCGTGACATGTCTTGCGAGAACATTGCGAGGAGGGTCTCCC GGCTTCCGAGTACACGGCAGAAGAGCGCGACGGGTTGTTGTGTCATTAGC CCGGCAACGTCGAGTCGGCATCCCTGTTTCCACCGCCGTCGAGCCACAGT CTTTCTATCTCTCTCTGGTCCTTCCTCTCTTCATCTCCCCTCTATCTATG CCGATGTTTCTTGTCTACTCTCCTCGTTCCCGTGCGTATCTATTCGTCTC GTAGATCGAAATGCTCTCCAAGAAGATCCAAGCTGGCATCATCCCGTCAG CGAACTACAAGCAGGGCGGCGGAGCGCCGGCGGCGGCGAACGGGGCTGCT GCGCCAGCCGCCGCGGCGGCTCCGGGGAAGCCTCCAGCCGCCACAACAAC CGAGGTCGAAAAGGCTTCGCCACAAACGGCGTCTCCTCAGGAGCCGCCGG CCACGGCAGTAGCAGCAGCAGGGAAGGCTGCTGCCCCCGCCGCCGCCCCC ACGGAGACGGGAACGGCGGCGACGGCGCCAGAAGCACCAGCAGCACCAGC ACAAGCTGCGCCGACGGAAACATCAAGCATGGACGTCGACGGTGCAGAGG AGGGGAAAACGGCGGAGGCGCCGGTTCCGGCTGCCGACGCTGAGAACGGC GAAGCCGAAGAAGAACCGCCAGCAACATCAGAAGCGGGGCAGGGGGGTGA GGGGAAGGAGGAGGCAAGTAGCGCCAAAGGGGGGGCAGACGGCGGCGGTG GTGGTGATGCTATGGTTGATGATGAGGGGGGAGAAGAAGCGGCCGCAGAA ACAGCGGAGGAGACGGCAACGGAGGCACCGGCGGAAACCGGCGAGGGGGA GGGGGACATGGAGCAGGAGGAGGGAGGAGGGCCCAAGCTTTCCGAAGCTG AAATCAAGTCGTATAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig913:10399..16118-

>mRNA_Ecto-sp8_S_contig913.30444.1 ID=mRNA_Ecto-sp8_S_contig913.30444.1|Name=mRNA_Ecto-sp8_S_contig913.30444.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1311bp|location=Sequence derived from alignment at Ecto-sp8_S_contig913:10399..16118- (Ectocarpus species8 EcLAC_412)
ATGCGGCTCACCGCTGACATAATCATGCACGCTCGTGCGAGCATCAACCC
TTGCGACGAGCGAGAGCTGGACCTTCGCGGGTACAAAATCCCGATGATCG
AGAACTTGGGGGTGACCCAAGATCAGTTCGACGCGATGGACTTCTCGGAC
AACGAGATCAAGAAGCTAGACAACTTCCCCCGATACAAGCGCCTGTCGTC
CCTCCTCCTCTGCAACAACCACGTCTCCAAGATTTCGGAAGACCTCGGCA
CTACTTTGCCGAACCTCTCCTGCCTGATACTCACCAACAACAAGCTCTCC
ACGCTAGCGGAACTCAAGGGCCTTGGCACCTGCGCGAAGCTGACGATGCT
CTCCTTGCTGCACAACGAGGTGGTAAACAAGCAGTACTACCGACTGTACA
TGATCAACCTCGTACCCAGCCTCAAGCAGCTGGATTTCCAGAAGGTCACG
GTGAAGGAGCGAGAGTCGGCGGCCCGATTGGCCAGGTCACAGGCAGGGCA
GGCGATGATACAGGACGTGGCGGAGCAGGCGGAGAAGGCTAAGACCTTCA
CGCCGGGCGCCCCCGCGGCGGAAGAGCAGAAGCTGACAGACGAGCACCGA
GCCATCTACGCCGATCGCATCGCGAAGGCCACCACGGTAGAGGAGATCGA
AATGCTCTCCAAGAAGATCCAAGCTGGCATCATCCCGTCAGCGAACTACA
AGCAGGGCGGCGGAGCGCCGGCGGCGGCGAACGGGGCTGCTGCGCCAGCC
GCCGCGGCGGCTCCGGGGAAGCCTCCAGCCGCCACAACAACCGAGGTCGA
AAAGGCTTCGCCACAAACGGCGTCTCCTCAGGAGCCGCCGGCCACGGCAG
TAGCAGCAGCAGGGAAGGCTGCTGCCCCCGCCGCCGCCCCCACGGAGACG
GGAACGGCGGCGACGGCGCCAGAAGCACCAGCAGCACCAGCACAAGCTGC
GCCGACGGAAACATCAAGCATGGACGTCGACGGTGCAGAGGAGGGGAAAA
CGGCGGAGGCGCCGGTTCCGGCTGCCGACGCTGAGAACGGCGAAGCCGAA
GAAGAACCGCCAGCAACATCAGAAGCGGGGCAGGGGGGTGAGGGGAAGGA
GGAGGCAAGTAGCGCCAAAGGGGGGGCAGACGGCGGCGGTGGTGGTGATG
CTATGGTTGATGATGAGGGGGGAGAAGAAGCGGCCGCAGAAACAGCGGAG
GAGACGGCAACGGAGGCACCGGCGGAAACCGGCGAGGGGGAGGGGGACAT
GGAGCAGGAGGAGGGAGGAGGGCCCAAGCTTTCCGAAGCTGAAATCAAGT
CGTATAAGGTG
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