mRNA_Ecto-sp8_S_contig11554.1909.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11554.1909.1
Unique NamemRNA_Ecto-sp8_S_contig11554.1909.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11554.1909.1 vs. uniprot
Match: D7FYZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ7_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 2.260e-92
Identity = 215/251 (85.66%), Postives = 219/251 (87.25%), Query Frame = 1 
Query:  166 SEGPDAAIGSWLCVPVLSLPSSRGEDGGDGAVTACCAVNKKNGRSFGDVDEAMLGTIAALYAVAASWLPXXXXXXXXXXXXXXXXXXXXXRTGTSPTAFPGRPEVTATVEPTPRATMQELRQPDGSSSPSRAAPXXXXXXXXXXXXXAVGPQQEWSRRFGSSRPEPRLLDEDNGDRDNRRSPTGFSGEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDVKIMSSNSGNEASLAIHRAAEANVEL 918
            SEGPDAAIGSWLCVPVLSLPSSR EDGGDGAVT CCAVNKKNGRSFGDVDEAMLGTIAALYAVAASWLP XXXXXXXXXXXXXXXXXXXX+TGTSP AFPG PE TATVEPTPRA M+ELRQPDGSSSPS AAP    XXXXXXXXXAVGPQQEWSRRFGSSRPEPRLLDEDNGDRD+RRSPT F GE XXXXXXXXX               XXXXXXXX SGD KI+SSNSGNEASLAIHRAAEANVEL
Sbjct:  389 SEGPDAAIGSWLCVPVLSLPSSRAEDGGDGAVTVCCAVNKKNGRSFGDVDEAMLGTIAALYAVAASWLPPXXXXXXXXXXXXXXXXXXXXQTGTSPAAFPGWPEATATVEPTPRAAMRELRQPDGSSSPSLAAPPLPAXXXXXXXXXAVGPQQEWSRRFGSSRPEPRLLDEDNGDRDSRRSPTAFGGEXXXXXXXXXXAFSGEGRRDEAGDKRXXXXXXXX-SGDGKIVSSNSGNEASLAIHRAAEANVEL 638
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BLAST of mRNA_Ecto-sp8_S_contig11554.1909.1 vs. uniprot
Match: A0A6H5K3T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T9_9PHAE)

HSP 1 Score: 293 bits (751), Expect = 1.180e-86
Identity = 179/254 (70.47%), Postives = 184/254 (72.44%), Query Frame = 1 
Query:  166 SEGPDAAIGSWLCVPVLSLPSSRGEDGGDGAVTACCAVNKKNGRSFGDVDEAMLGTIAALYAVAASWLPXXXXXXXXXXXXXXXXXXXXXRTGTSPTAFPGRPEVTATVEPTPRATMQELRQPDGSSSPSRAAPXXXXXXXXXXXXXAVGPQQEWSRRFGSSRPEPRLLDEDNGDRDNRRSPTGFSGEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---SGDVKIMSSNSGNEASLAIHRAAEANVEL 918
            SEGPDAAIGSWLCVPVLSLP SRGEDGGDGAVT CCAVNKKNGRSFGDVDEAMLGTIAALYAVAASWLP                     RTGTSP AFPG+P  TATVEPTP A M+ELRQPDGSSSP RAAP             AVGPQQEWSRRFG SRPEPRLLDE NGDRD+RRSPT FSGEQXXXXXXXXXXXX                    X   SGD KIMS+NSGNEASLAI RAA+ANVEL
Sbjct: 2461 SEGPDAAIGSWLCVPVLSLPLSRGEDGGDGAVTVCCAVNKKNGRSFGDVDEAMLGTIAALYAVAASWLPPPSLPPTAESSDHNHSNDDDERTGTSPAAFPGQPGATATVEPTPGAAMRELRQPDGSSSPLRAAPPAPVQPQPAAASPAVGPQQEWSRRFGPSRPEPRLLDEGNGDRDSRRSPTAFSGEQXXXXXXXXXXXXEDAFSGKGRRDEAGDRRSGSXXXXSGDGKIMSTNSGNEASLAILRAAKANVEL 2714
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11554.1909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYZ7_ECTSI2.260e-9285.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3T9_9PHAE1.180e-8670.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11554contigEcto-sp8_S_contig11554:2722..4880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size921
Hectar predicted targeting categoryother localisation
Exons2
Cds size918
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143225.4017484-CDS-Ecto-sp8_S_contig11554:2723..33231681143225.4017484-CDS-Ecto-sp8_S_contig11554:2723..3323Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11554 2724..3323 -
1681143225.4095948-CDS-Ecto-sp8_S_contig11554:4562..48801681143225.4095948-CDS-Ecto-sp8_S_contig11554:4562..4880Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11554 4563..4880 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11554.1909.1prot_Ecto-sp8_S_contig11554.1909.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11554 2724..4880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11554.1909.1

>prot_Ecto-sp8_S_contig11554.1909.1 ID=prot_Ecto-sp8_S_contig11554.1909.1|Name=mRNA_Ecto-sp8_S_contig11554.1909.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=306bp
GGGGGTTPADLLSSRRSPSRSFRRRSREALLAARASSSSAAASLASMSGE
GGGGGSEGPDAAIGSWLCVPVLSLPSSRGEDGGDGAVTACCAVNKKNGRS
FGDVDEAMLGTIAALYAVAASWLPPPPLPPTAESSDHNNNKDDEERTGTS
PTAFPGRPEVTATVEPTPRATMQELRQPDGSSSPSRAAPSAPAQAQPAAA
APAVGPQQEWSRRFGSSRPEPRLLDEDNGDRDNRRSPTGFSGEQQQQQPP
PESAFSGKGRRDEAGDKRRSSSGGGGGSGDVKIMSSNSGNEASLAIHRAA
EANVEL
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mRNA from alignment at Ecto-sp8_S_contig11554:2722..4880-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11554.1909.1 ID=mRNA_Ecto-sp8_S_contig11554.1909.1|Name=mRNA_Ecto-sp8_S_contig11554.1909.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2159bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11554:2722..4880- (Ectocarpus species8 EcLAC_412)
GGTGGCGGCGGCGGCACCACACCGGCAGACCTCCTGTCGTCGCGCCGTTC
CCCCTCGCGCTCGTTCAGGAGGCGTTCTCGTGAAGCACTGCTGGCGGCGC
GGGCTTCTTCTTCTTCTGCTGCCGCTTCTTTGGCGAGCATGAGCGGTGAA
GGCGGGGGTGGTGGGAGTGAGGGGCCGGACGCGGCGATAGGGAGCTGGCT
GTGCGTCCCTGTGTTGAGCCTCCCGTCGTCGCGGGGGGAGGACGGTGGTG
ACGGGGCGGTGACGGCGTGCTGCGCGGTGAACAAGAAGAACGGTCGAAGC
TTCGGTGACGTGGACGAGGTATGTACTGGGTGCGCGTTCGATTTTTTCTT
TTTCTTTTTCGTGGTTGGCTTGCTTGCGTGCTTCTTTTTGACATGTGTAC
ACAGGTGTGTCGTTCTCGTTTTGGTTTTTGTCTGAATTGGTTGCGCAGCT
CCGCAACAATCGCAGATCCAGTGCTTCTTTTGGAACTTGGGACCCCTCTC
TCCGCGGGTCTGTTAGGTGGTCCTGGTACTGTGTTTTACTCAACACGAGA
GCCCTCTCCTTTGTCGGCCTCTAGGCTTGCAGTTCTCCTCGATTGCTGTG
CGAGTTTCTGTTGTCAATGTTTTGTTGTAGACTCGACAAAATTACAGCCC
CGGGCACCACTCGTACCCCCGCACACACTCACTCCTACAGTAGTAAAGCT
TTGCCGCATTTCGCTTTCTTTACCTTCGCGCTTGTTGAGCCCAAGAAGAG
GACGCCGGGCTTGATGCCCGCCAGGCACGTGCAGCAAGGCGATGGGTTGA
ACAGGATAGAGATCTTAAACTTACAGCCCTTCACTAGTGTTCTTCTGGTA
GTATAGCCCCCGAAGGTTGCCCACGGCCGTGCCACGTTAGCGTTGTCTTA
TTCAAGGGCAATGCACTGGCCGATAGCCTCACCGAGGAGAAAAATCGGCG
CCAGGCTTGCGCTTTCGCGGCAGCCGTGGCGGTTGCGCGACGTCGTCTTC
AGTGTAGGCGCGGGAGCAGGAGCTGAGTGCTGCTGAGAGTGAGCGTGTTC
GCAGCTGCTGTGGAGCGAGTGTGTGCGGGGGGCACGAGAGGGAGAGAAGA
GCAAGCTTCGCACGGGGCAGAGAATAGGAACTCGCGGAGATGCACCGGGA
TTCAAATGCAGTCTAACATCACACGAAATGACGTGGATGAAATGGTGGCC
TGTCAGGGTGCCAATAATCGGAACTTTGGCCTGTGCGCATTCCACACGGA
AACGGAAATCTGGCGCCTGCTGTACTCTGAGCGGAAAGACAACTGACATA
GACAACTGACATGAATCTTCTGTTACCACAGCTATATTAATGGTCATATC
CTTGTCGGCGATAGTATAAAAGGGCTCCTTTCAGTGACCGTTTAAGTCGA
TGGTGTCGTTTTCGAGACATGTTGTAAGGGTCACATGCTTGCCGTGTCGT
ACGATGTTTTCCTCTATGACTACGCGACTTCCTCCAGCTATGCTAACAAC
CTTCCGTTCGATGGGACCTGCTGCTGCGTGCTCCTGTTTCGACAACGACC
ACACTAGGCCATGCTCGGCACCATCGCGGCCTTGTACGCCGTTGCCGCCT
CGTGGCTACCACCACCACCGCTTCCGCCGACTGCGGAAAGCTCGGACCAC
AACAACAACAAAGACGACGAGGAGCGAACCGGCACAAGTCCCACCGCCTT
CCCCGGCCGGCCTGAAGTAACGGCGACGGTGGAACCCACGCCACGTGCCA
CGATGCAAGAGCTCAGACAACCCGACGGGTCTTCCTCGCCATCGCGGGCA
GCACCATCAGCACCAGCACAAGCACAACCAGCCGCAGCAGCACCAGCAGT
CGGACCACAGCAAGAGTGGTCTCGACGCTTCGGCTCTTCCAGGCCGGAGC
CGCGGCTGTTGGACGAAGACAACGGCGACCGAGATAACCGGCGGTCACCG
ACGGGTTTTAGCGGAGAGCAGCAGCAGCAGCAGCCCCCCCCGGAGAGCGC
TTTTTCTGGAAAAGGACGCCGAGATGAAGCAGGAGACAAGAGGAGAAGCA
GCAGCGGCGGCGGCGGTGGTAGCGGCGACGTGAAGATCATGAGCAGCAAC
AGCGGGAACGAGGCGTCTCTGGCAATCCACCGCGCAGCGGAGGCGAACGT
CGAGCTCCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11554:2722..4880-

>mRNA_Ecto-sp8_S_contig11554.1909.1 ID=mRNA_Ecto-sp8_S_contig11554.1909.1|Name=mRNA_Ecto-sp8_S_contig11554.1909.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11554:2722..4880- (Ectocarpus species8 EcLAC_412)
GGTGGCGGCGGCGGCACCACACCGGCAGACCTCCTGTCGTCGCGCCGTTC
CCCCTCGCGCTCGTTCAGGAGGCGTTCTCGTGAAGCACTGCTGGCGGCGC
GGGCTTCTTCTTCTTCTGCTGCCGCTTCTTTGGCGAGCATGAGCGGTGAA
GGCGGGGGTGGTGGGAGTGAGGGGCCGGACGCGGCGATAGGGAGCTGGCT
GTGCGTCCCTGTGTTGAGCCTCCCGTCGTCGCGGGGGGAGGACGGTGGTG
ACGGGGCGGTGACGGCGTGCTGCGCGGTGAACAAGAAGAACGGTCGAAGC
TTCGGTGACGTGGACGAGGCCATGCTCGGCACCATCGCGGCCTTGTACGC
CGTTGCCGCCTCGTGGCTACCACCACCACCGCTTCCGCCGACTGCGGAAA
GCTCGGACCACAACAACAACAAAGACGACGAGGAGCGAACCGGCACAAGT
CCCACCGCCTTCCCCGGCCGGCCTGAAGTAACGGCGACGGTGGAACCCAC
GCCACGTGCCACGATGCAAGAGCTCAGACAACCCGACGGGTCTTCCTCGC
CATCGCGGGCAGCACCATCAGCACCAGCACAAGCACAACCAGCCGCAGCA
GCACCAGCAGTCGGACCACAGCAAGAGTGGTCTCGACGCTTCGGCTCTTC
CAGGCCGGAGCCGCGGCTGTTGGACGAAGACAACGGCGACCGAGATAACC
GGCGGTCACCGACGGGTTTTAGCGGAGAGCAGCAGCAGCAGCAGCCCCCC
CCGGAGAGCGCTTTTTCTGGAAAAGGACGCCGAGATGAAGCAGGAGACAA
GAGGAGAAGCAGCAGCGGCGGCGGCGGTGGTAGCGGCGACGTGAAGATCA
TGAGCAGCAACAGCGGGAACGAGGCGTCTCTGGCAATCCACCGCGCAGCG
GAGGCGAACGTCGAGCTC
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