mRNA_Ecto-sp8_S_contig11404.1773.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11404.1773.1
Unique NamemRNA_Ecto-sp8_S_contig11404.1773.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11404.1773.1 vs. uniprot
Match: D8LPR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR3_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 8.320e-80
Identity = 133/142 (93.66%), Postives = 136/142 (95.77%), Query Frame = 1 
Query:  226 IDTMIRNVGYDGGLLKVFRRYDDDHSGSITATEMTMMVRDSVSEAIAEAPDNCSLRLDMEPVVETLVKDVARDLVAVMDVTGSGMLGWTEFKKNQTLVTARLATLREFVFSVALRRGGTAAATADAPPELASSNGSTRLDSL 651
            +D    NVGYDGGLLKVFRRYDDDHSGSITATEMTMMVRDSVSEAIAEAPDNCSLR D+EPVVETLVKDVARDLVAVMDVTGSGMLGWTEFKKNQTLVTARLATLREFVFSVAL+RGGTAAATADAPPELASSNGSTR DSL
Sbjct:  314 LDEGTGNVGYDGGLLKVFRRYDDDHSGSITATEMTMMVRDSVSEAIAEAPDNCSLRPDIEPVVETLVKDVARDLVAVMDVTGSGMLGWTEFKKNQTLVTARLATLREFVFSVALQRGGTAAATADAPPELASSNGSTRPDSL 455
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BLAST of mRNA_Ecto-sp8_S_contig11404.1773.1 vs. uniprot
Match: A0A6H5KRT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT1_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 4.020e-41
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 1 
Query:  400 MEPVVETLVKDVARDLVAVMDVTGSGMLGWTEFKKNQTLVTARLATLREFVFSVALRRGGTAAATADAPPELASSNGSTRLDSL 651
            MEPVVETLVKDV RDLVAVMDVTGSGMLGWTE KKNQTLVTARLATLREFVFSVAL+RGGTAAATADAPPEL  SN STR DSL
Sbjct:    1 MEPVVETLVKDVTRDLVAVMDVTGSGMLGWTELKKNQTLVTARLATLREFVFSVALQRGGTAAATADAPPELTRSNCSTRPDSL 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11404.1773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPR3_ECTSI8.320e-8093.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRT1_9PHAE4.020e-4191.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11404contigEcto-sp8_S_contig11404:5..3944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score254.6
Seed ortholog evalue4.2e-65
Seed eggNOG ortholog2880.D8LPR3
Model size656
KEGG koko:K19932
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.EF-hand, calcium binding motif
EggNOG OGs29SF0@1,2RXDP@2759
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-18_002170.1
Cds size654
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11404.1773.1prot_Ecto-sp8_S_contig11404.1773.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11404 5..3944 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143215.4592447-CDS-Ecto-sp8_S_contig11404:4..651681143215.4592447-CDS-Ecto-sp8_S_contig11404:4..65Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11404 5..65 +
1681143215.4747887-CDS-Ecto-sp8_S_contig11404:439..4991681143215.4747887-CDS-Ecto-sp8_S_contig11404:439..499Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11404 440..499 +
1681143215.4911869-CDS-Ecto-sp8_S_contig11404:1421..15411681143215.4911869-CDS-Ecto-sp8_S_contig11404:1421..1541Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11404 1422..1541 +
1681143215.510368-CDS-Ecto-sp8_S_contig11404:1946..20411681143215.510368-CDS-Ecto-sp8_S_contig11404:1946..2041Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11404 1947..2041 +
1681143215.528507-CDS-Ecto-sp8_S_contig11404:2510..26271681143215.528507-CDS-Ecto-sp8_S_contig11404:2510..2627Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11404 2511..2627 +
1681143215.5470562-CDS-Ecto-sp8_S_contig11404:2821..28781681143215.5470562-CDS-Ecto-sp8_S_contig11404:2821..2878Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11404 2822..2878 +
1681143215.5613556-CDS-Ecto-sp8_S_contig11404:3800..39441681143215.5613556-CDS-Ecto-sp8_S_contig11404:3800..3944Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11404 3801..3944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11404.1773.1

>prot_Ecto-sp8_S_contig11404.1773.1 ID=prot_Ecto-sp8_S_contig11404.1773.1|Name=mRNA_Ecto-sp8_S_contig11404.1773.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=218bp
GGVQRGRRGRRWKRQHGGLEGVAVARWRDGGGRAAGSYCSENGERHRREP
GRCDQSHRMDALHSRAGRGNRQAHAIDTMIRNVGYDGGLLKVFRRYDDDH
SGSITATEMTMMVRDSVSEAIAEAPDNCSLRLDMEPVVETLVKDVARDLV
AVMDVTGSGMLGWTEFKKNQTLVTARLATLREFVFSVALRRGGTAAATAD
APPELASSNGSTRLDSL*
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mRNA from alignment at Ecto-sp8_S_contig11404:5..3944+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11404.1773.1 ID=mRNA_Ecto-sp8_S_contig11404.1773.1|Name=mRNA_Ecto-sp8_S_contig11404.1773.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3940bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11404:5..3944+ (Ectocarpus species8 EcLAC_412)
GGTGGCGTTCAGCGTGGTCGACGAGGACGGCGTTGGAAGCGTCAGCATGG
GGGACTTGAAGGTACATACACGGTAGAGTGGGACGACACCCGGCCGGCGT
CATTCTTGCAACACGACACTGCTTGCAGTGCACATGGAAGTGTCGAATTT
CACTACTTCTTTTGGCAGGAGAGAATACGTTGCGGTTATCCCACTTAGCG
TTTGGATTGCGCGGATGGAAGTAAAAGTTGCAGGAGATCTCAACGACCGG
ATCGCTTCAAGCATGGAGCTAGTTCTTCTCTACATGTATTTTTTTACGTA
AGGCGGCAGAGACAGGCTAGTCGCTGACTTTGCATACTCCGTGTACACAG
CAGTAGTGTATTGTTTCAGGTCCTAGAAGGCGTCGGTTGGTGTTTAATGT
GTGAGATGTGTTTCCTGCCCAATTTATCATGACAGGCGTTGCTGTGGCTC
GGTGGAGGGACGGGGGGGGAAGAGCCGCCGGAAGCTACTGTTCAGGTACA
CCCATGCGATGCGGTCGATTCTCTGTAGAGGTTGACAGACATTGGTGTTT
GGGCACTTCAAAGCGGTAGCAACGTGGGTGGTGTAGGACGACCACGAGGT
ACGAACGTGAAACGATGCGATGCGAGAAGTACCAGATATAGAGTTGACTG
TTTTTTGACCGGTAATGCGGGGCGTGGGCGTTGAGAACACGTTTACGGCT
ACCAGAGCCTGTTTTGAATCTAGTCGAGCGCCCGGGCCACTCGATGGTGG
TAAAGGGGTGACTGGTCCTGCGGGTTATACATTCAATACGGTACGGTCTG
AACGAAAGAAACAAACGGATAGCACCGATACTTACTCTTTTCGTCGTTAT
AGGACGGCAGTGTTGGTGCTGACTTTGGTTCTAGGAGTCCCTGTAGACTA
AGACAGCATAACACTTTTTCACGCACTTTTTCGTTTATGCCTGCTGCCAG
ATGTTCGTGTTGGCGCGGGCAGACCTTCATGTTGTGGACCGAACACATCC
TGCAAATTACAGCGTTGCTTTTGCTTGGTGGACGAAGCTGGTTCCCTTTT
CGTTTCACGACCAACCATGTCTTTGCAGCAGCGAGCGTGCGTTGAACCGC
GGTGCGTCACCTTTCCATTCTCGGTCTCAGAAGGGATTTGTGGTAACACT
TCAAAGGCCTTGACTTGAGACTAACAGTAAATAGAGCACGACCGATCCTC
CTCGTCCTCATCAACAACGTGAAATACACTCCCGCGGGGGAAAGCACCCA
TGGGAGTGGAACTGTCCTTGACAAGGTCGGTGAAGTCAGCGGGCACACGT
CGAGATGAGCTACCACACCACCACACAAGCGTGTGCCCCCCTCTCGAACC
CCTCGCTGCCCATGCTTTCGTTCGTTGTTCTTTCCTCTTGTGTCCATCCG
TTGTCACTGACCTGAAGAAAACGGCGAACGACATCGACGAGAGCCAGGAC
GGTGTGATCAATCGCATAGAATGGATGCGCTTCACAGCCGTGCTGGACGA
GGGAACAGGCAAGCACACGCCATCGACACGATGATCAGTGCAGGCACTAC
CAAAGTACCCCACTGCTTCCAACATTTGCGATGCGAGTGATCCTGATGTG
GGGAGGAAAGGGTTTGGGGATGAGGCCTAGAACGTGGCGTTTTTTGGTGG
AATGTTCCCAGAAGACATCGCCCAGTATTTCACGCTCTCCTCCGGTGATA
AACGTATGGTCCTGTATGCAACTTTACGCACGATAGAAGCGTAGTTATGC
AGAGCTCGACCGTGCTGACAATCGTGGCCTGGCTGTCAGGAAATGGCATT
GGTCATGTTCTAGCAGGCGAAATATCCATCACCCCGCGACCATGACGTTG
TCGAGAATGGTACTTTGCGAGCAACTTTCTTGTATTGTCTCCCTTTCTTC
CTTGACGCACTGATTGGACTATGTTTTCGCCACTGCCTTCAGGGAATGTC
GGGTATGACGGTGGACTCCTGAAGGTGTTCCGCCGTTATGATGACGATCA
CAGTGGCAGCATCACCGCCACTGAGATGACCATGATGGTATGCACGTGAT
TTTGCATTATTTGTGTCGCACGTACAGTTTGTTTGGTGCATGGTTCCTGA
ACATTTATTGGTCGTCGCTCTCCTATACTTGCGCTACGATCTCCGGTCAG
TGGCGACAAAGTCTTGAACGAGAGGCGATCAAGCGTCGCTACGAGATCAC
CAATATCCCCCGAGTCCACAAGTGGGAGGGTGATTTTGTAGTTTGACTTT
CAAACCGCGGATTCAGTCATATGAAGATAGCGATAACTTGTGGAGGGTTC
CAGAATGTACCACTGGGATTGTCCACCGTAGGAGGGTGTGTGGCCATTAC
GGCACCCCTGGTGACAAGCGGAGGGTAGGGAAATTGACGCCAAAACCACG
CACAGGTGGTCCATTGGAGTGCTGCTTGGTTCAGTGTGCTGCTACTGTAT
AATATTTTTGTTGTTGTGACATATCGTTTCGCGTTGCTCTTTTGTTGTGG
ATACAGGTGCGAGATTCCGTAAGTGAGGCGATAGCCGAGGCTCCCGATAA
CTGCTCCTTGAGGCTGGACATGGAACCGGTGGTGGAAACCCTCGTCAAGG
ACGTTGCCCGAGACCTTGTAGCCGTGAGTAGCGAGGTCGCCAAACATAAG
CGCGCCTTTGGTAGCTTGACATCCTCCTGAAGCAAGTCGCCTGTTGAACG
TACGGTTCAACCAGACATAGTATTGCACAAGTTTTCCTTCGTAGACCAGT
GATTGCGGGGATCCTTAACACAACCATGGTGATAACGACACGCTTGATCC
GCATTTTGATGGTACAGGTTATGGACGTGACCGGCAGCGGGATGCTCGGC
TGGACTGAATTCAAGAAAAACCAAGTAAGATGCTGCTAGTCTAGTCTACC
TAGGACGTGGTGTATTCGCACGTGCCATCCACGCTGTAGTTCGTTCAGGT
GGGCTCGACCCAATGATTACAGTAGTTGCTTCCCTCCCTGGCAGCAGCTC
CGTTTCAACTGGTCTGACTTCATCCATTTTGGGTGGTCTGTGATTTGGGA
AGATTGGTAAGTGCTGTTTCGTTCCATCATGGAGGGGTAGATGGAGTGTA
CAACGAAATGCTTAGAAACCCCGGACCGTACGCCGACCGGGGAGGAGAAG
GGTAGAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGATCGAGA
CAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACA
GAGAGAGAGAGAGAGGGCTCTAATCAACGCTGATCCTGACATTCACATCA
ACGTTGGATGCTGAAAGGAGGGTAGACGGACAGTTGTACCGCAGGCACAG
GCTCCAGCCCATTTTCTCGGTCATTTTTTCGTCTTCATGTCGCCCTCCAC
CCCCTATACCCCATAACTTGCCTGTGAAGTACCAGACGTAGGTCAGCCAG
ATTTAAACATGATGCGAGTGTCCATGGGAAACTCTACATTCATAACGAGT
CCCCCCCCCCCGTGTATTGCAACAATCGCCGACGATGCATGCCGCCATCA
ATCCTCAAACAACATGACGACTACCCCCCACCCCCACCCCCTCTGTCGAC
GATGTAACGCCATTATCCCTCCTGAAACAAGAATGACTACGACCCCTCCG
TTGCTTGCTGTACCACACATCAGACTGTATGTCGGTGATACATCAAGCTC
GTGTAACTTTCTGCGTCTATCTGACTCCGGCTAATGGTGCCTTGTGGACC
TCTGTTCGGCGGGTGTACGTTGCGGCGTCGAATTTATTTCCTAAAGACCC
TGGTGACAGCTCGCCTCGCCACCTTGCGCGAGTTTGTGTTCTCAGTGGCT
CTTCGGCGAGGCGGCACGGCGGCGGCGACGGCAGACGCCCCACCTGAGCT
TGCAAGCAGCAATGGTAGCACTAGGCTAGACAGCTTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11404:5..3944+

>mRNA_Ecto-sp8_S_contig11404.1773.1 ID=mRNA_Ecto-sp8_S_contig11404.1773.1|Name=mRNA_Ecto-sp8_S_contig11404.1773.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11404:5..3944+ (Ectocarpus species8 EcLAC_412)
GGTGGCGTTCAGCGTGGTCGACGAGGACGGCGTTGGAAGCGTCAGCATGG
GGGACTTGAAGGCGTTGCTGTGGCTCGGTGGAGGGACGGGGGGGGAAGAG
CCGCCGGAAGCTACTGTTCAGAAAACGGCGAACGACATCGACGAGAGCCA
GGACGGTGTGATCAATCGCATAGAATGGATGCGCTTCACAGCCGTGCTGG
ACGAGGGAACAGGCAAGCACACGCCATCGACACGATGATCAGGAATGTCG
GGTATGACGGTGGACTCCTGAAGGTGTTCCGCCGTTATGATGACGATCAC
AGTGGCAGCATCACCGCCACTGAGATGACCATGATGGTGCGAGATTCCGT
AAGTGAGGCGATAGCCGAGGCTCCCGATAACTGCTCCTTGAGGCTGGACA
TGGAACCGGTGGTGGAAACCCTCGTCAAGGACGTTGCCCGAGACCTTGTA
GCCGTTATGGACGTGACCGGCAGCGGGATGCTCGGCTGGACTGAATTCAA
GAAAAACCAAACCCTGGTGACAGCTCGCCTCGCCACCTTGCGCGAGTTTG
TGTTCTCAGTGGCTCTTCGGCGAGGCGGCACGGCGGCGGCGACGGCAGAC
GCCCCACCTGAGCTTGCAAGCAGCAATGGTAGCACTAGGCTAGACAGCTT
GTAG
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