mRNA_Ecto-sp8_S_contig11392.1757.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11392.1757.1
Unique NamemRNA_Ecto-sp8_S_contig11392.1757.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11392.1757.1 vs. uniprot
Match: D8LMN6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMN6_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 9.400e-6
Identity = 41/117 (35.04%), Postives = 62/117 (52.99%), Query Frame = 3 
Query:  165 VLKTIEGSLNANNLGGNHCVTAGTGFTARREAEILG--HLEEVPYFLMRDHRIEPPAAGIAVGSTRTEVPFPKGSTDMRVYAFFQRKDDKKWVRYKDKFYSIGRGKKVYTLDATNQC 509
            V + IE  LN    GG++   A     A+   +++   H  +  YFL RD+R  P AA      T  ++ FPKGS  +RVYA+   +  K+W  ++DK +  GRGK+ + +  TNQC
Sbjct:   62 VFRNIEDQLND---GGSYRTNA-KHHNAKHGWDVINAEHALDDEYFLRRDYR--PDAA------TAKKLRFPKGSRQLRVYAYAWFEKQKEWRVFRDKVFDNGRGKR-FRISTTNQC 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11392.1757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMN6_ECTSI9.400e-635.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11392contigEcto-sp8_S_contig11392:4167..5660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size885
Hectar predicted targeting categoryother localisation
Exons2
Cds size477
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143214.2980165-UTR-Ecto-sp8_S_contig11392:4166..43241681143214.2980165-UTR-Ecto-sp8_S_contig11392:4166..4324Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11392 4167..4324 +
1681143214.3228493-UTR-Ecto-sp8_S_contig11392:5410..56601681143214.3228493-UTR-Ecto-sp8_S_contig11392:5410..5660Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11392 5411..5660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143214.3063717-CDS-Ecto-sp8_S_contig11392:4324..47081681143214.3063717-CDS-Ecto-sp8_S_contig11392:4324..4708Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11392 4325..4708 +
1681143214.3145308-CDS-Ecto-sp8_S_contig11392:5317..54101681143214.3145308-CDS-Ecto-sp8_S_contig11392:5317..5410Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11392 5318..5410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11392.1757.1prot_Ecto-sp8_S_contig11392.1757.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11392 4325..5410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11392.1757.1

>prot_Ecto-sp8_S_contig11392.1757.1 ID=prot_Ecto-sp8_S_contig11392.1757.1|Name=mRNA_Ecto-sp8_S_contig11392.1757.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=159bp
MWVLKTIEGSLNANNLGGNHCVTAGTGFTARREAEILGHLEEVPYFLMRD
HRIEPPAAGIAVGSTRTEVPFPKGSTDMRVYAFFQRKDDKKWVRYKDKFY
SIGRGKKVYTLDATNQCRDCSVPVASPQQRQAAVLLPFRARQAELAMVHI
LASSWTCQ*
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mRNA from alignment at Ecto-sp8_S_contig11392:4167..5660+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11392.1757.1 ID=mRNA_Ecto-sp8_S_contig11392.1757.1|Name=mRNA_Ecto-sp8_S_contig11392.1757.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1494bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11392:4167..5660+ (Ectocarpus species8 EcLAC_412)
GTCCGTAGTGCAAGCGCCCGAGTAGGAGGGTTGTTTGTTGTTCCGGGTAT
CGCTGACGTCAAGAAACAGGCCGGGCTTGAGCTTGGAAACAAGAAAGAGC
GACTACCGCATGTCTTACTGGGTTCTGCTGGAGGACAAAGTTAAGGCCAC
GGCGATCCATGTGGGTCCTCAAAACGATAGAGGGCTCCTTGAACGCCAAC
AACCTCGGGGGCAACCACTGTGTAACTGCAGGGACCGGTTTCACCGCCCG
GAGAGAGGCCGAGATTTTGGGGCATCTAGAGGAGGTGCCGTATTTTCTCA
TGCGGGATCATCGGATAGAACCTCCGGCTGCGGGAATTGCTGTTGGGTCG
ACAAGGACTGAGGTGCCGTTTCCGAAAGGCTCCACCGACATGCGGGTGTA
CGCCTTCTTCCAGAGAAAGGACGACAAGAAGTGGGTACGGTACAAGGACA
AGTTTTATTCCATCGGCCGGGGCAAGAAGGTCTACACTCTGGATGCCACC
AATCAATGTCGGGATTGCTCCGTACCTGTAGCATCACCGCAGGTACACAC
AACATGGTTTGGTGTGGGAGTTGGCAATCACTTGTTTTGTTATGCAGTTG
ATGTAGGAGGAGCGTTCCACGGGCACCGAGTTTGCCGAAATTCATACCGG
GAACTACTGTAAAGTCTAGCCTGAAACAGATACATATTAATATAGTTGTA
CATTTTTTTTACCGATAGCGCCCGTCGAAAAAACTACAAGTAGAAGCTAA
GAACTTGAGAACCAATAAATATGAGCCTGGGTAAAAGAACCCGTAGACTA
AAACCTACCGGTATATTATAGTGGCCATTTGTATAGCGCACAAGAAGATC
TATAAGAACCCCAGCCTCGGCCGAAACTCCAAGTAAGTGCGGGCGCTATC
GGTACTACCAAATATTGCTGTTGTAGCGTACAGATGGCCGATGATCGCCA
GCGACAATCATCTGTCCACAACTAAGTACTAGTTATTTGTGTGGTAGAAG
ATGGATTGTAATATTTGCCTGTGTAATAAAATGTTGAAAGGAGAAACAGA
CAACAGATAGAATTTTGCATTTTTTCCATGACTCCTCCCCCTCTTCTCCC
GCCCTCGCCCCCAAACAAACGCCATTCGAATCACCACGTGCGTGCACACA
GCAGCGGCAGGCAGCCGTTCTCTTGCCGTTCCGAGCACGACAAGCAGAGC
TCGCGATGGTGCACATACTTGCCTCGTCATGGACATGTCAATGAGGGTGG
GAAAACAAATGAGAAACGTGTGTGTCCCCGTGAGGGACCAGGTACTTGGG
GGATATTACAAGAGACTTACGTACGTACATGCTCGCCTGGGGTAAGCACG
TGATCAGTCGACCAACAAGCATACCACTTTGTAGACTGTACTTGAGATAC
GCTCGGTTGCCCACAGGCCCATGTTCTTCTTTTTAGTTTTCTAATATGAC
CCAACGAATCCATCTCTATCTACAGTATGAGAAAATAGTCAAGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11392:4167..5660+

>mRNA_Ecto-sp8_S_contig11392.1757.1 ID=mRNA_Ecto-sp8_S_contig11392.1757.1|Name=mRNA_Ecto-sp8_S_contig11392.1757.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11392:4167..5660+ (Ectocarpus species8 EcLAC_412)
ATGTGGGTCCTCAAAACGATAGAGGGCTCCTTGAACGCCAACAACCTCGG
GGGCAACCACTGTGTAACTGCAGGGACCGGTTTCACCGCCCGGAGAGAGG
CCGAGATTTTGGGGCATCTAGAGGAGGTGCCGTATTTTCTCATGCGGGAT
CATCGGATAGAACCTCCGGCTGCGGGAATTGCTGTTGGGTCGACAAGGAC
TGAGGTGCCGTTTCCGAAAGGCTCCACCGACATGCGGGTGTACGCCTTCT
TCCAGAGAAAGGACGACAAGAAGTGGGTACGGTACAAGGACAAGTTTTAT
TCCATCGGCCGGGGCAAGAAGGTCTACACTCTGGATGCCACCAATCAATG
TCGGGATTGCTCCGTACCTGTAGCATCACCGCAGCAGCGGCAGGCAGCCG
TTCTCTTGCCGTTCCGAGCACGACAAGCAGAGCTCGCGATGGTGCACATA
CTTGCCTCGTCATGGACATGTCAATGA
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