mRNA_Ecto-sp8_S_contig11380.1747.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11380.1747.1
Unique NamemRNA_Ecto-sp8_S_contig11380.1747.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11380.1747.1 vs. uniprot
Match: D8LU93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU93_ECTSI)

HSP 1 Score: 420 bits (1079), Expect = 4.240e-142
Identity = 218/222 (98.20%), Postives = 220/222 (99.10%), Query Frame = 1 
Query:    1 MAFGVVLVGCTLVSWILVILCWQLMPSTRGPGSRILADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFSYSALALPNLGQGLATVVAHWLIGMALGFFAWNFSAPGGAGGIAETSGALGGLVAGGAACSAWSAVCFLRERRHHLRLGLPSGATMPAYLRGEAYGSIKEGLLCGAVIGAGYLVLRTVSELLPGSMVGRALSVLLGLPSAASTSEGT 666
            MAFGVVLVGCTLVSWILVILCWQLMPSTRGPGSRILADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFSYSALALPNLGQGLATVVAHWLIGMALGFFAWNF+AP GAGGIAETSGALGGLVAGGAACSAWSAVCFLRERRHHLRLGLPSGA MPAYLRGEAYGS+KEGLLCGAVIGAGYLVLRTVSELLPGSMVGRALSVLLGLPSAASTSEGT
Sbjct:   26 MAFGVVLVGCTLVSWILVILCWQLMPSTRGPGSRILADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFSYSALALPNLGQGLATVVAHWLIGMALGFFAWNFAAPRGAGGIAETSGALGGLVAGGAACSAWSAVCFLRERRHHLRLGLPSGAAMPAYLRGEAYGSVKEGLLCGAVIGAGYLVLRTVSELLPGSMVGRALSVLLGLPSAASTSEGT 247
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BLAST of mRNA_Ecto-sp8_S_contig11380.1747.1 vs. uniprot
Match: A0A6H5JGF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF5_9PHAE)

HSP 1 Score: 357 bits (917), Expect = 7.020e-116
Identity = 209/310 (67.42%), Postives = 214/310 (69.03%), Query Frame = 1 
Query:    1 MAFGVVLVGCTLVSWILVILCWQLMPSTRGPGSRILADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFSYSALALPNLGQGLATVVAHWLIGMALGFFAWNFSAP-GGA----------------------------------------------------------------------------------------GGIAETSGALGGLVAGGAACSAWSAVCFLRERRHHLRLGLPSGATMPAYLRGEAYGSIKEGLLCGAVIGAGYLVLRTVSELLPGSMVGRALSVLLGLPSAASTSEG 663
            MAFGVVLVGCTLVSWILVILCWQL PSTRGPGSRI ADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFS+SALALPNLGQGLATVVAHWLIGMALGFFAWNF+AP GGA                                                                                        GG+AETSGALGGLVAGGAACSAWSAVCFLRERRHHLRLGLPSGA MPAYLRGEA GS KEGLLCGAVIGAGYLV+RTVSELL GSMVGRALSVLLGL +AASTSEG
Sbjct:   26 MAFGVVLVGCTLVSWILVILCWQLTPSTRGPGSRIPADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFSFSALALPNLGQGLATVVAHWLIGMALGFFAWNFAAPRGGADGIVNEFMKFGGKGMIQLMVLLYNWVWKNEYTPSRWREGVVVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSITGGLAETSGALGGLVAGGAACSAWSAVCFLRERRHHLRLGLPSGAAMPAYLRGEACGSAKEGLLCGAVIGAGYLVVRTVSELLTGSMVGRALSVLLGLSAAASTSEG 335
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11380.1747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU93_ECTSI4.240e-14298.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGF5_9PHAE7.020e-11667.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11380contigEcto-sp8_S_contig11380:297..4183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size667
Hectar predicted targeting categorysignal peptide
Exons4
Cds size666
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143213.613391-CDS-Ecto-sp8_S_contig11380:296..3991681143213.613391-CDS-Ecto-sp8_S_contig11380:296..399Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11380 297..399 -
1681143213.6208882-CDS-Ecto-sp8_S_contig11380:1748..19681681143213.6208882-CDS-Ecto-sp8_S_contig11380:1748..1968Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11380 1749..1968 -
1681143213.6280844-CDS-Ecto-sp8_S_contig11380:2243..24571681143213.6280844-CDS-Ecto-sp8_S_contig11380:2243..2457Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11380 2244..2457 -
1681143213.6358323-CDS-Ecto-sp8_S_contig11380:4054..41831681143213.6358323-CDS-Ecto-sp8_S_contig11380:4054..4183Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11380 4055..4183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11380.1747.1prot_Ecto-sp8_S_contig11380.1747.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11380 297..4183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11380.1747.1

>prot_Ecto-sp8_S_contig11380.1747.1 ID=prot_Ecto-sp8_S_contig11380.1747.1|Name=mRNA_Ecto-sp8_S_contig11380.1747.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=222bp
MAFGVVLVGCTLVSWILVILCWQLMPSTRGPGSRILADFLSIMVVALCHS
LAVFSRYLVCDADDAPRRRAASGGFSYSALALPNLGQGLATVVAHWLIGM
ALGFFAWNFSAPGGAGGIAETSGALGGLVAGGAACSAWSAVCFLRERRHH
LRLGLPSGATMPAYLRGEAYGSIKEGLLCGAVIGAGYLVLRTVSELLPGS
MVGRALSVLLGLPSAASTSEGT
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mRNA from alignment at Ecto-sp8_S_contig11380:297..4183-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11380.1747.1 ID=mRNA_Ecto-sp8_S_contig11380.1747.1|Name=mRNA_Ecto-sp8_S_contig11380.1747.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3887bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11380:297..4183- (Ectocarpus species8 EcLAC_412)
ATGGCGTTCGGCGTTGTGCTCGTGGGGTGCACGCTCGTCTCTTGGATCCT
GGTGATCTTGTGTTGGCAGCTCATGCCCAGCACGCGCGGGCCCGGGTCTA
GGATACTTGCGGATTTCCTGTCCATCATGGTGAGAAACTACGAACGATTT
GTCGCTTTGGAGAATCAGTGTGAATTTCGAGTAGACTATGTGGGAAACGC
GGAGATTTTTGAAATTTGCGACATGGACACCAGCACTGCTGTAGCAAGGC
CACCATCACCGAGCGGGACGGTGTGTAGACTAGAGAGGCAGAGAGAGGAG
AGTACTGCTGTTGAGGCATTGCACTACCGTTGCATGCGCGCAGTAGAGCA
ACAGCAGTAGCAACCGGTGCTTGACTGTTTGCCGTCATGCGTTGTGACCA
TTGTGAAAAAAATATACCCAGCAACCAAATATTGAAAAATAGACCAACGT
CCTGTCTCCAGGAGTGGTTGTGAAGGTGACATTTGTGGGCGCGTCATGAC
CGGTATCACACTGACTTCCAGCAGTACGTCTTTATTGTTGTTGTTGTTCT
TCTTGTCTTCACATGAAAAACCGTTCCGGTCTCCACTCGGCACCTTCTAA
TGTCCGTACTGGTCCAACTGTCGCGGACGCCTTCCTTGATCGCAAGCCAA
CTGCCCCCCTACTTGGAGTACTTCATTCATGTGGTTCAGCTGGTGGTTTC
GCTACCTTCCTTGTGGTGTTTGGGTTTGCGTTCGAATCTCGACGCGGTCA
CGTGACCTGGAATCTTTCTCACAGCATGCCCGAAGGAGGTCGATATGTAA
CGAACGCGAATCGTGTGTAATACATCAACTTCGGGCCTCTAATTAGCTGA
CAGTAGGGCTGGCCGATTCACTCGCACTACATACAATAGCGGGCAGGCAC
CTGCCCCCTTCAAAGTATGACACAACTTGATAGACTATTCCACCTGTGCC
AAGACTTTTCACCCGCCCAACTCCAGCCACCTGTCCTATAGAGGCCCACG
GTTATGTACAATGGAGCGCTGAACACGGACTCCTGTCCACATGTACCAAA
CTCGACTTTACATTCATCCCGGGTGATGGTGGACGATGCCCACGCTACGG
TGGCAGCGTCTACCCGGGACGTGAGATCGATCCCCGCTACTAGAGCGGAC
TTGTTTTTTCTGCGGAATAGGTGCCAACGATGTAAAGTTTGCGATGACAT
GAGACCTCCTGCTACGAATACCCTGGAGACTACACCCAGTGTTGTTTCCC
CCGCATTGACGTTTCGTCGGCGGTACGCGCAGCAATACCCCGGGACATGA
AAAAGTTTCTACACAGCAGTTGGGCAGGCGGGAAGGTCTGTTGTTCCTAC
CCTTCTCTCCCTCCGTTAGGGCTGGGAAGGCTTGTCACGAGTGGGTGCTA
TCTCCAAGAATCTCTTTTCATTCACGGAACCCCTTCGTGGTTCCGTTGGT
TCCATGATTTCGGCATTATGTTACTCCGCAAAGGGTTTTTTTTTTCACAA
CGGCCGAGAGGAGTGACCAATGGATCAATCGCCGTTAGCGATTTGGGGAA
GAAGAAGCTTGGAGCGCAAAAAGCACACGCATAGGTGTTTGAGAAAAGAC
TATCGCATACATCTAGTAAAGACATCACACTCACGAACATTGAAGTTCCT
TATTGTGTGCGTCGGCTAAATGAATGAACGAACGAACGAACGAACGAACG
AACGAACGAACGAATCACGCGAGCAGGTGGTGGCGCTGTGCCACAGCCTC
GCGGTCTTCTCGCGGTACCTCGTATGCGACGCGGACGACGCCCCCCGCCG
CCGCGCCGCCTCCGGGGGCTTTTCGTACTCCGCCCTCGCCCTCCCCAACC
TGGGGCAGGGGCTCGCGACGGTCGTCGCCCACTGGCTCATCGGCATGGCT
CTCGGGTTCTTCGCGTGGAACTTCTCGGCACCTGGGGGAGGTGAGTCGAA
GAAGAAAGGATGCCAACATTTGCTGTGAGTCTGCTGCCTTCTTTGCATAT
AGGCGTAAATGACAGCAGCGCTTCTATAATCGAATCGTGGCTGATGGCCC
AAGCTCTCAACTCCCCATTTGGCCAAGACAAGTGCCAGACGACTACCCGC
TCGTACTCTCCAGGTCAAGGTACGTGCCAAACGACTACTCCCCCCCCCCA
CTATCTAGGCCAAGACAAGTACCAAACGACTACCCCCGCCCTCGCCTCTT
CCTCTCCTCTCGCAGCGGGGGGGATTGCGGAGACCTCCGGCGCGCTCGGC
GGCCTCGTGGCCGGGGGCGCCGCCTGCAGCGCGTGGTCGGCGGTCTGCTT
CCTGAGGGAGAGGAGGCACCACCTCCGCCTCGGCCTGCCCAGCGGTGCGA
CCATGCCGGCCTACCTCCGGGGCGAGGCCTACGGGAGCATAAAGGAGGGG
CTGCTTTGCGGCGCCGTTATCGGGGCGGGATATCTGTGAGTGATGGGTGG
TGGCTGTCGTTCGGTCGGTGGTGGGGAGAGAGGGCGTTTGTTGTGCGTAC
GCGTTTTGCGGGTATCTGTGAGCGACGACGGTAATTGTCGGTGGGGAGAG
AGGGCGTTTGTTTTGCGTGCAATGTTTTGCGTGTGTGTGCGTGTGTCTTT
TTTTTGCAGGCATCGACCTGCCCCTGTGGGCCATACGGTGGCCACGTTGG
CGAAGGCGTGTGGCGGACGCAAGTCTCAGCGGGCTGGGAATGAAAAGGCT
GCATTGTTGCGTATTTAGCTGGAATCTTTGCGCGGGCTTTGTTCCTCCGT
GTCCCCGGAGACTCCGACCGACGGATGGTGTGAGTGTGTTTGTGTGTGTG
TTTCTTTGATTGCATCGACAGCGCTAACCGTCTGACCAATGACAACAGGC
CGTATCAAAATCGCGGACACGCGTTCTAGCCAAAGGGATCTGCGGACAGG
GAAGGGGCAGGAGTTGGACGACATGTGTGTTCCATTAGTTCGCAACGACC
GCGCTAACCGGCTGGCTAGTGAAAAGTGTGTTTGTGTTTTGTGTGTGTGT
CTTTGATGAAGCTTCGGCCGGGCCGACCAGGCGACAAACGAGAAAAACCC
AGGCCTTTCGGCCGCATAACAGATACGTTCAGAACGCCTTTGTTTGCTAC
ATCCCCCGATCGGGGAGGGGGCGCGAACGGCACTGGATAAGAAGCGTGTG
CGTGTAGAATCGGGATATCGAGCCGACTAGTGAGAAAAGCGTTACGTCAT
AGCCACAGCGGATCGAGCACAGAAATTTCCAGGGAGAAATGTACCGGGGA
GGGGGGGGGATAGATAAACGGCGGAGTTTGAAATGACAATGTGTATCATG
CCGGCAAGCAACCCTCAGCGTTGCCCCAATCTATGCCGGCTTGAAGTTGC
GTGCTGTTGAGACAACTAAATCTGGCTGGTGTTGTTGTTTGATGTTGGGC
ATCCGGGATTTGTGTCCGAACCGCGACCCTTCGGCTTTGAGGCCTAGAAA
CAGAAAGGCACGAAGGTACATTCACACGACTAGAGGGGCGGGAACGAGGC
CTAAACTAATTTTCGCGGTAATTCGTGTCAGAACACAAACTATTGGCTAG
GTAACAGATGCCCCCCCCCGCCCGCCCCTCCCCCTCCTACATATTTCAAA
ACCTTTGCCTCGTGTATTCCTCAACATTACAAGTCTGACATGAACTACAA
GGGCAAATGACTCCAAAGCGAAGGCGGCGTGAGAAATGATGCCTCCGACC
CTGTCTGCGTCCCACACGTGCTGCTGCTGTTTTTTTATCTCTGTGGTTGT
TGTTGTTGTTGGCATCGCTCATTTGTTCATTAAGAGTGCTGCGGACCGTG
AGCGAACTGCTTCCCGGGAGCATGGTGGGACGCGCGCTGTCGGTGTTGCT
CGGTCTTCCCTCCGCTGCTTCTACCTCCGAGGGAACG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11380:297..4183-

>mRNA_Ecto-sp8_S_contig11380.1747.1 ID=mRNA_Ecto-sp8_S_contig11380.1747.1|Name=mRNA_Ecto-sp8_S_contig11380.1747.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11380:297..4183- (Ectocarpus species8 EcLAC_412)
ATGGCGTTCGGCGTTGTGCTCGTGGGGTGCACGCTCGTCTCTTGGATCCT
GGTGATCTTGTGTTGGCAGCTCATGCCCAGCACGCGCGGGCCCGGGTCTA
GGATACTTGCGGATTTCCTGTCCATCATGGTGGTGGCGCTGTGCCACAGC
CTCGCGGTCTTCTCGCGGTACCTCGTATGCGACGCGGACGACGCCCCCCG
CCGCCGCGCCGCCTCCGGGGGCTTTTCGTACTCCGCCCTCGCCCTCCCCA
ACCTGGGGCAGGGGCTCGCGACGGTCGTCGCCCACTGGCTCATCGGCATG
GCTCTCGGGTTCTTCGCGTGGAACTTCTCGGCACCTGGGGGAGCGGGGGG
GATTGCGGAGACCTCCGGCGCGCTCGGCGGCCTCGTGGCCGGGGGCGCCG
CCTGCAGCGCGTGGTCGGCGGTCTGCTTCCTGAGGGAGAGGAGGCACCAC
CTCCGCCTCGGCCTGCCCAGCGGTGCGACCATGCCGGCCTACCTCCGGGG
CGAGGCCTACGGGAGCATAAAGGAGGGGCTGCTTTGCGGCGCCGTTATCG
GGGCGGGATATCTAGTGCTGCGGACCGTGAGCGAACTGCTTCCCGGGAGC
ATGGTGGGACGCGCGCTGTCGGTGTTGCTCGGTCTTCCCTCCGCTGCTTC
TACCTCCGAGGGAACG
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