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Homology
BLAST of mRNA_Ecto-sp8_S_contig11359.1725.1 vs. uniprot
Match: A0A6H5KJC2_9PHAE (AhpC-TSA domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC2_9PHAE) HSP 1 Score: 651 bits (1679), Expect = 5.490e-229 Identity = 357/417 (85.61%), Postives = 371/417 (88.97%), Query Frame = 2
Query: 92 MGFQQAETPTFCAMALLASEHKLTMSNSLTSSRTSSPSPRITDDGPPPPDHGWTATQPDYPSRFNEVVISDDGESSILSSQAPSTT--AVAPAAAPSTPRSEAPRRRVLWTAFDSPPPGPGGGRELERRKATFKIFVIFRGSWCTSSQALLKG---FTEINPAIKKAGGKVVALSSQTAEQVGRAAHDMRLPFQAFGDPSNGLVDEMNIRFKMGCTVNRNDVVTDSYPHGMAQPCVLAVFTDDAQDEGSVLFRWNQWQTIASMRHADALAHITRALASKADEPEGGPSSGTPTATTRVGLDGFPTPPSSAAAAPPPARLPPRQPTXXXXXXXXXSPSSSFGRTGGYAPFGGDNV--WVPGNGRESRERPTTAAGTRVGGRGALAATASAAADGALAVEWMRTGRHPASMSKPRAAES 1321
M FQQAETPTFCAM L ASEHKLTMSNSL+S RTSSPSPRITD PPPPDHGW ATQ +YPSR+NE+ ISDDGESSILS QAPSTT A APAAAPSTPRSEAPRRRVLWTAFDSPPPGPGGGRELERRK TFKI+VIFRG WCTSSQALLKG F E+NPAIKKAGGKVVALSSQTAEQVGRAAHDMRLPFQAFGDPSNGLVDEMNIRFKMGCTVNRN++V D+YPHGMAQPCVLAV TDDAQDEGSVLFRWNQWQTIASMRHAD LAHITRALASKAD PEGGPSSGTPTATT VGLDGF TPPSS ARLPPRQPTXXXXXXX SPSSSFGRTG +APF GD V WVPGN RESRERPTTA+GTR GGRGA+AATA AAAD ALAV WMRTGR+PAS+SK RAA S
Sbjct: 1 MDFQQAETPTFCAMTL-ASEHKLTMSNSLSSGRTSSPSPRITDVSPPPPDHGWKATQRNYPSRYNELAISDDGESSILSIQAPSTTTAAPAPAAAPSTPRSEAPRRRVLWTAFDSPPPGPGGGRELERRKTTFKIYVIFRGGWCTSSQALLKGDFRFMELNPAIKKAGGKVVALSSQTAEQVGRAAHDMRLPFQAFGDPSNGLVDEMNIRFKMGCTVNRNEMVKDAYPHGMAQPCVLAVLTDDAQDEGSVLFRWNQWQTIASMRHADTLAHITRALASKADGPEGGPSSGTPTATTHVGLDGFATPPSSXXXXXXXARLPPRQPTXXXXXXXVGSPSSSFGRTGEFAPFRGDKVGLWVPGNRRESRERPTTASGTRGGGRGAMAATAGAAADAALAVGWMRTGRNPASLSKSRAAGS 416
BLAST of mRNA_Ecto-sp8_S_contig11359.1725.1 vs. uniprot
Match: D8LHS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS8_ECTSI) HSP 1 Score: 413 bits (1062), Expect = 2.070e-136 Identity = 219/265 (82.64%), Postives = 226/265 (85.28%), Query Frame = 2
Query: 533 LLKGFTEINPAIKKAGGKVVALSSQTAEQVGRAAHDMRLPFQAFGDPSNGLVDEMNIRFKMGCTVNRNDVVTDSYPHGMAQPCVLAVFTDDAQDEGSVLFRWNQWQTIASMRHADALAHITRALASKADEPEGGPSSGTPTATTRVGLDGFPTPPSSAAAAPPPARLPPRQPTXXXXXXXXXSPSSSFGRTGGYAPFGGDNV--WVPGNGRESRERPTTAAGTRVGGRGALAATASAAADGALAVEWMRTGRHPASMSKPRAAES 1321
L KGF EINP IKK GGKVVALSSQTAEQVGR AHDMRLPFQAFGDPSNGLVDEMNIRFKMGCTVN+NDVV D+YPHGMAQPCVLAV TDDAQDEGSVLFRWNQWQTIASMRH DALAHITRALA K +EPEGGPSSGTPTAT+ VGLDGF TPP ARLPPRQPT SPSSSF RTGGYAPFGGD+V WVPGN RESRERPTTAAGTR GGRGA+AATA AAADGALAVEWM+TGR PAS SKPRAA S
Sbjct: 6 LRKGFMEINPGIKKVGGKVVALSSQTAEQVGRGAHDMRLPFQAFGDPSNGLVDEMNIRFKMGCTVNQNDVVKDTYPHGMAQPCVLAVSTDDAQDEGSVLFRWNQWQTIASMRHVDALAHITRALAIKKNEPEGGPSSGTPTATSHVGLDGFATPPXXXXXXXXXARLPPRQPTLLRQPPRPGSPSSSFERTGGYAPFGGDDVGLWVPGNRRESRERPTTAAGTRGGGRGAIAATARAAADGALAVEWMKTGRDPASTSKPRAAGS 270
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Model size | 1407 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Cds size | 1314 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681143212.145697-UTR-Ecto-sp8_S_contig11359:1324..1415 | 1681143212.145697-UTR-Ecto-sp8_S_contig11359:1324..1415 | Ectocarpus species8 EcLAC_412 | UTR | Ecto-sp8_S_contig11359 1325..1415 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681143212.1558702-CDS-Ecto-sp8_S_contig11359:1415..1866 | 1681143212.1558702-CDS-Ecto-sp8_S_contig11359:1415..1866 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig11359 1416..1866 + |
| 1681143212.1652222-CDS-Ecto-sp8_S_contig11359:4072..4235 | 1681143212.1652222-CDS-Ecto-sp8_S_contig11359:4072..4235 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig11359 4073..4235 + |
| 1681143212.1825333-CDS-Ecto-sp8_S_contig11359:4744..4889 | 1681143212.1825333-CDS-Ecto-sp8_S_contig11359:4744..4889 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig11359 4745..4889 + |
| 1681143212.19286-CDS-Ecto-sp8_S_contig11359:5459..6014 | 1681143212.19286-CDS-Ecto-sp8_S_contig11359:5459..6014 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig11359 5460..6014 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig11359.1725.1 >prot_Ecto-sp8_S_contig11359.1725.1 ID=prot_Ecto-sp8_S_contig11359.1725.1|Name=mRNA_Ecto-sp8_S_contig11359.1725.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=438bp
MGFQQAETPTFCAMALLASEHKLTMSNSLTSSRTSSPSPRITDDGPPPPD HGWTATQPDYPSRFNEVVISDDGESSILSSQAPSTTAVAPAAAPSTPRSE APRRRVLWTAFDSPPPGPGGGRELERRKATFKIFVIFRGSWCTSSQALLK GFTEINPAIKKAGGKVVALSSQTAEQVGRAAHDMRLPFQAFGDPSNGLVD EMNIRFKMGCTVNRNDVVTDSYPHGMAQPCVLAVFTDDAQDEGSVLFRWN QWQTIASMRHADALAHITRALASKADEPEGGPSSGTPTATTRVGLDGFPT PPSSAAAAPPPARLPPRQPTPLRQPPPAGSPSSSFGRTGGYAPFGGDNVW VPGNGRESRERPTTAAGTRVGGRGALAATASAAADGALAVEWMRTGRHPA SMSKPRAAESSGGHGGRAAEEEEEEEAPVQETSNGGGG back to topmRNA from alignment at Ecto-sp8_S_contig11359:1325..6014+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp8_S_contig11359.1725.1 ID=mRNA_Ecto-sp8_S_contig11359.1725.1|Name=mRNA_Ecto-sp8_S_contig11359.1725.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4690bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11359:1325..6014+ (Ectocarpus species8 EcLAC_412) TTGCTGAGCAGCAACCTTGCGCCGCGCACGGCCTTACAAGGAAAACAAAG
AGGGTCCCGCGGCGGTCAGTGCTGGGGGTGCACACTCTGGCATGGGCTTC
CAGCAGGCGGAAACGCCGACCTTCTGCGCGATGGCTCTCCTCGCGTCCGA
GCACAAGTTGACCATGAGCAACAGCCTCACGTCCAGCAGGACCTCGAGTC
CATCGCCACGCATCACCGATGACGGCCCCCCACCTCCCGACCACGGGTGG
ACAGCTACCCAGCCGGACTATCCGTCGCGGTTCAACGAGGTCGTCATCAG
TGACGACGGCGAGAGCAGCATTCTGAGCAGCCAGGCTCCGTCGACGACAG
CAGTAGCACCAGCAGCAGCACCTTCTACCCCGAGGTCGGAGGCGCCGCGG
CGCAGAGTGCTTTGGACGGCGTTTGACTCCCCACCGCCGGGGCCGGGGGG
AGGGAGGGAGCTCGAGAGACGGAAGGCGACGTTCAAGATTTTCGTTATAT
TCAGGGGCAGTTGGTGCACTTCAAGCCAGGCACTCCTCAAAGGCGAGTTT
GTTCAGCATCTATCTCCTTCTGTCCTTATTCTATCCATGCGAAGAAAGAC
AAACCGCTCCACCTGACAAGCATTTTAGCATTTCATAGCACCAAAGGGGC
AAAAGGGGTGTGTGCCTCATGTTGAACGAACTATGGAGATAAGGTTACCA
GCACATAGTAGATGTGCAAGCACTGAGTGTCACCAGGCGCATGCCGCGGG
AGGGCGTCTCCCCCTCAACCAAACACAACGCCCGTGGGTGCTGCTGCTGC
CCCTATTTTATGAGCTGGCGGACAAAATGCATACAATTGGAGGCAATACT
GCCACCATCCGGGGTAAAGGGGGATAGGGAGACTCGGAACAACGTCCCGT
CCCACGTTGTTTGCATACATACAACACAACCAGCTCTCCCGGTACACGCG
GGCGCACGTTGTTCCAACTAGCCCTTTTCTAGCACCTTTGTCTGTGACGT
GTGGAAATGAGCAAAAGCGTCCCACACAACGACACGCTGTTTGTCGCGTC
ACTTACATTTCCGGGAACGATCGAATGTTTCCTGGAAACGAAGCAGCTAC
TTCAAAGCAAGTATGTTTTGGAGCGATTTATCGAATCTCTTCCTCCTGCG
ACAAGTTTTACCCCCCTCCTGAGCTCTCTCCCCCCCGACCGCGCTGAGCA
GCTAGCCCCCCCTCGTTACCACAGAGCCCTTTGAGATTACGTGTGCGTAC
GTATGCATTTGTGCAACAGCAGCAGGATTACTGATGTACATTGCATACAT
GAATAGGATACCCCACTTGTGGTTGTACATGGTATGCATAAAAGCATATA
AGGATATATCCTTACCGGAGATTTCGTCACCCGCCGTGGATGGATTGTGG
TCTACGGTATATACTACTGCTGTACCTGCTGTGTAAATGCTGCTGTACCT
CCTTGCATACGGGTGGGTTTGAATTGAAGATGCACCATCACACGAAATAT
GTAGAGTGGTTGTATGTGCTGCAGGCACTGCTATTCTATTTCAGCATGCC
AGCAAAGCCACGCGATCGATCCGATCCTGCTTGCCTCTCCCAACTTTCTT
CTTTTGCAACATATGGGAGCACCGCACACACCTGGTGGAACATCGCCAAC
ATTTCCTTTTCTTTTCTCCAGCCAATCTCCGGCCGTCATTTATTGCAGTG
GATTGTGTCCTACAGTAAATCTCAGGTACCCGTAAGAACGCTCTTAACAG
GTTCGTATCTCTTTATTTTGGACTCGTTAAGGTTCGCCGGGTTCATCAAG
TCGAAAGACGTCCGCTCTGTCAGCTACTATTACGCTTATTTAGAAATAGC
AGACGTCCTTCTTGCTGGTATGCATAACCAACTGTGGGCTGGTCCTGCTC
GGTTGCTCTTTTTATTTGCCATGTTGCATCATCAACCCTTGCTGAGCCCC
GCGGGGCTCTCTTATGAGCCCACCCCCGCCGGGGGGATGTACATGCATAC
ATGCATGACTGGAACGATGAAAATGATACATTGGCCCGAGTCGTTCAGCC
CAACCGCTGGTGTCCTGCTTGTGAACAATCGTTTGCCTTCAGACCGTTCG
TCATGTGAAACTACGCCCCGTTGCTCGCCCCACAACGGCAGCCACTGCCC
TTACGAAGGACAATAGAAAGTAGAACATAGGTTCGCCCAGCTTGACACTT
GCAGTGCTCGGCGAACCACAATACATCATTGTAGCCATACACAGCAGCAG
TAGATGTTTCCCAGAACGCAACTATGTCGCACAACCATGCATAGCGTTCG
TGTGATCGGGAGTCCCGTCTCCAAGATTTCGGGTAACTGCTGTATGCCTC
TGATATTCGACGGTGCGTACGTAGATGTTCCACCCAAAATAAATCCCGAT
ACTGCTCGTGTCATATCACACCGTTCAACACGGCCGGGTATACACCAACC
CGACTTGGCGGTAGGCGAGGGAAAGCAACGGCTGCTGAAACATTTTCAGG
GAGTCTTTACACTGCACGCGCATGCTGATGTCGAAGAATGACTCCCCGCT
CGAGATAGATATTGACCTGCCCGAAGGGTTGTGTGTTGCAACGTTGCAAC
CATTAACGCTAAAGAAAGCAGCGCGGAAGGAAGGCGGCAAAGAAAACCAA
GTACACTTGGCACCCTGCACTGGCTGCTAGATCTCGAGCGAATACTTGAA
TATTCCTGTGCTGCTGTTGTGTTCTTAACTTTTTTGGTCGTCCTGCAGGG
TTCACGGAGATTAACCCGGCCATTAAGAAGGCCGGGGGAAAGGTGGTCGC
CCTCAGCTCGCAGACAGCGGAGCAGGTGGGCCGGGCGGCGCATGACATGC
GCCTCCCCTTCCAGGCGTTCGGAGACCCCAGCAACGGCCTCGTGGACGAG
ATGAACATACGGTGAGAGAAGCGTTGTACGTGGAGGAGCGCACCATTTTT
CGTGTTGTTGCCATACCGTGAGGGGAGAGGGGTACTACTTTTGTTTTCGG
ATTTTTTTTGCCTTGCTTTGGCTGGCACGTTGCGAAAATAGCGCGTTGTT
ACGAAAGGTTAAGGTTGGTGTTGTTGTCGTTGTGTTGTTCAAGCCGTTGG
ATGGATCTCTCTCCGGCACGCCGTGGTGTTTTGGATGCCGTACAAAGTGA
CACACGACAACGCCAACCCGGTGAGCGCAAACGTGGAGCGCGTTGGCCGC
AGCTGTGGCGTGATGTAGGGGGAGGCTTCTCGCGCCATCCTTTTTGTCGA
GGTACACCAGCCTGTGCCTGTTTCTTTTTTTTGCCGGGAATAATCTGTAT
CCGTGATGGCGTTCCGCTGCCCGTGTGATATCTTCCGCGCGCCCGTGTAT
TTGACACCCCCGCCACCCCCACCCCCCGTGCTTTCGTTGTCCTACTGTAT
GTGCATACGTACCGCGAAAGGTTCAAGATGGGCTGCACCGTGAACCGGAA
CGACGTGGTGACAGACTCCTACCCTCACGGGATGGCGCAACCGTGCGTGT
TGGCCGTGTTTACCGACGATGCTCAAGACGAGGGATCGGTTTTGTTCAGA
TGGAACCAGTGGCAGGTGCGTGGTAGAGGTGGTTTCTCACGCCAGGTCTT
TCACAACAAAACCACAGCCGTTTTTTTTCCAGTCACTGCTGCAAGGACTT
GACGCCATCCTCTTGGACTGTGGCTAGCGAGTAGTCTTTTTTGGATATGG
ACATATCTTTTGGTTCATAGAAGCCAGGAAACATACGTGCTCTTTTGGCG
CAGGAAACATGACTTGTGATTGCCCCAACTGGTTTCTAAAATGTTTGAGG
AGCAAGTGCGTGACGGACTTGCCTGGCCAAGACTTGCATGGTTGCCGTGC
TCAAGGACGGAGAAGTCGCTCAACACCAACAGCGAATTCGGTATTTTTCT
TTTTGAGATTTCGTTCCTGTGTCCTGTGGTTTGGTTCGATCGAAACTGGG
CTGCTGCTGTGGGTCGCGCGCGTTCGTAGCCAACCTCGCTTGTGCTCCCG
TTACCGTTTCCAGCGAGCGGCGTGCCCGTCTAGGCAAAGTTAAGTACGAT
ATTGTAGTCACCTCCATTCTCCCCCCACACCTCTGACCCTCTCGCCCCCC
CCTCTCTCTTGTCATCCACCCCCCCCCACGTCCAGACGATCGCGTCCATG
AGGCACGCCGACGCCTTGGCGCACATCACCAGGGCGCTTGCCTCCAAGGC
GGACGAACCAGAAGGTGGCCCCTCCTCCGGCACACCGACGGCGACAACGC
GCGTCGGCCTCGACGGCTTCCCCACCCCGCCCTCCTCCGCCGCTGCCGCG
CCGCCGCCGGCTCGACTCCCTCCCCGCCAGCCCACGCCCCTCCGACAACC
GCCGCCCGCGGGCTCGCCGTCATCATCGTTTGGAAGAACTGGCGGGTACG
CGCCGTTTGGGGGCGACAACGTGTGGGTCCCGGGTAACGGACGGGAATCC
CGCGAACGTCCCACCACCGCCGCCGGTACCCGCGTCGGCGGGCGGGGGGC
GTTGGCGGCAACGGCGAGCGCTGCTGCGGACGGGGCGCTCGCGGTCGAGT
GGATGAGAACGGGCCGACACCCGGCTTCAATGTCGAAGCCGCGGGCGGCG
GAGAGCAGCGGCGGCCACGGCGGTAGAGCAGCGGAGGAAGAGGAGGAGGA
GGAGGCGCCCGTCCAGGAAACAAGCAACGGCGGCGGAGGA back to topCoding sequence (CDS) from alignment at Ecto-sp8_S_contig11359:1325..6014+ >mRNA_Ecto-sp8_S_contig11359.1725.1 ID=mRNA_Ecto-sp8_S_contig11359.1725.1|Name=mRNA_Ecto-sp8_S_contig11359.1725.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1314bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11359:1325..6014+ (Ectocarpus species8 EcLAC_412) ATGGGCTTCCAGCAGGCGGAAACGCCGACCTTCTGCGCGATGGCTCTCCT CGCGTCCGAGCACAAGTTGACCATGAGCAACAGCCTCACGTCCAGCAGGA CCTCGAGTCCATCGCCACGCATCACCGATGACGGCCCCCCACCTCCCGAC CACGGGTGGACAGCTACCCAGCCGGACTATCCGTCGCGGTTCAACGAGGT CGTCATCAGTGACGACGGCGAGAGCAGCATTCTGAGCAGCCAGGCTCCGT CGACGACAGCAGTAGCACCAGCAGCAGCACCTTCTACCCCGAGGTCGGAG GCGCCGCGGCGCAGAGTGCTTTGGACGGCGTTTGACTCCCCACCGCCGGG GCCGGGGGGAGGGAGGGAGCTCGAGAGACGGAAGGCGACGTTCAAGATTT TCGTTATATTCAGGGGCAGTTGGTGCACTTCAAGCCAGGCACTCCTCAAA GGGTTCACGGAGATTAACCCGGCCATTAAGAAGGCCGGGGGAAAGGTGGT CGCCCTCAGCTCGCAGACAGCGGAGCAGGTGGGCCGGGCGGCGCATGACA TGCGCCTCCCCTTCCAGGCGTTCGGAGACCCCAGCAACGGCCTCGTGGAC GAGATGAACATACGGTTCAAGATGGGCTGCACCGTGAACCGGAACGACGT GGTGACAGACTCCTACCCTCACGGGATGGCGCAACCGTGCGTGTTGGCCG TGTTTACCGACGATGCTCAAGACGAGGGATCGGTTTTGTTCAGATGGAAC CAGTGGCAGACGATCGCGTCCATGAGGCACGCCGACGCCTTGGCGCACAT CACCAGGGCGCTTGCCTCCAAGGCGGACGAACCAGAAGGTGGCCCCTCCT CCGGCACACCGACGGCGACAACGCGCGTCGGCCTCGACGGCTTCCCCACC CCGCCCTCCTCCGCCGCTGCCGCGCCGCCGCCGGCTCGACTCCCTCCCCG CCAGCCCACGCCCCTCCGACAACCGCCGCCCGCGGGCTCGCCGTCATCAT CGTTTGGAAGAACTGGCGGGTACGCGCCGTTTGGGGGCGACAACGTGTGG GTCCCGGGTAACGGACGGGAATCCCGCGAACGTCCCACCACCGCCGCCGG TACCCGCGTCGGCGGGCGGGGGGCGTTGGCGGCAACGGCGAGCGCTGCTG CGGACGGGGCGCTCGCGGTCGAGTGGATGAGAACGGGCCGACACCCGGCT TCAATGTCGAAGCCGCGGGCGGCGGAGAGCAGCGGCGGCCACGGCGGTAG AGCAGCGGAGGAAGAGGAGGAGGAGGAGGCGCCCGTCCAGGAAACAAGCA ACGGCGGCGGAGGA back to top
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