mRNA_Ecto-sp8_S_contig11359.1725.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11359.1725.1
Unique NamemRNA_Ecto-sp8_S_contig11359.1725.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig11359.1725.1 vs. uniprot
Match: A0A6H5KJC2_9PHAE (AhpC-TSA domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC2_9PHAE)

HSP 1 Score: 651 bits (1679), Expect = 5.490e-229
Identity = 357/417 (85.61%), Postives = 371/417 (88.97%), Query Frame = 2
Query:   92 MGFQQAETPTFCAMALLASEHKLTMSNSLTSSRTSSPSPRITDDGPPPPDHGWTATQPDYPSRFNEVVISDDGESSILSSQAPSTT--AVAPAAAPSTPRSEAPRRRVLWTAFDSPPPGPGGGRELERRKATFKIFVIFRGSWCTSSQALLKG---FTEINPAIKKAGGKVVALSSQTAEQVGRAAHDMRLPFQAFGDPSNGLVDEMNIRFKMGCTVNRNDVVTDSYPHGMAQPCVLAVFTDDAQDEGSVLFRWNQWQTIASMRHADALAHITRALASKADEPEGGPSSGTPTATTRVGLDGFPTPPSSAAAAPPPARLPPRQPTXXXXXXXXXSPSSSFGRTGGYAPFGGDNV--WVPGNGRESRERPTTAAGTRVGGRGALAATASAAADGALAVEWMRTGRHPASMSKPRAAES 1321
            M FQQAETPTFCAM L ASEHKLTMSNSL+S RTSSPSPRITD  PPPPDHGW ATQ +YPSR+NE+ ISDDGESSILS QAPSTT  A APAAAPSTPRSEAPRRRVLWTAFDSPPPGPGGGRELERRK TFKI+VIFRG WCTSSQALLKG   F E+NPAIKKAGGKVVALSSQTAEQVGRAAHDMRLPFQAFGDPSNGLVDEMNIRFKMGCTVNRN++V D+YPHGMAQPCVLAV TDDAQDEGSVLFRWNQWQTIASMRHAD LAHITRALASKAD PEGGPSSGTPTATT VGLDGF TPPSS       ARLPPRQPTXXXXXXX  SPSSSFGRTG +APF GD V  WVPGN RESRERPTTA+GTR GGRGA+AATA AAAD ALAV WMRTGR+PAS+SK RAA S
Sbjct:    1 MDFQQAETPTFCAMTL-ASEHKLTMSNSLSSGRTSSPSPRITDVSPPPPDHGWKATQRNYPSRYNELAISDDGESSILSIQAPSTTTAAPAPAAAPSTPRSEAPRRRVLWTAFDSPPPGPGGGRELERRKTTFKIYVIFRGGWCTSSQALLKGDFRFMELNPAIKKAGGKVVALSSQTAEQVGRAAHDMRLPFQAFGDPSNGLVDEMNIRFKMGCTVNRNEMVKDAYPHGMAQPCVLAVLTDDAQDEGSVLFRWNQWQTIASMRHADTLAHITRALASKADGPEGGPSSGTPTATTHVGLDGFATPPSSXXXXXXXARLPPRQPTXXXXXXXVGSPSSSFGRTGEFAPFRGDKVGLWVPGNRRESRERPTTASGTRGGGRGAMAATAGAAADAALAVGWMRTGRNPASLSKSRAAGS 416          
BLAST of mRNA_Ecto-sp8_S_contig11359.1725.1 vs. uniprot
Match: D8LHS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS8_ECTSI)

HSP 1 Score: 413 bits (1062), Expect = 2.070e-136
Identity = 219/265 (82.64%), Postives = 226/265 (85.28%), Query Frame = 2
Query:  533 LLKGFTEINPAIKKAGGKVVALSSQTAEQVGRAAHDMRLPFQAFGDPSNGLVDEMNIRFKMGCTVNRNDVVTDSYPHGMAQPCVLAVFTDDAQDEGSVLFRWNQWQTIASMRHADALAHITRALASKADEPEGGPSSGTPTATTRVGLDGFPTPPSSAAAAPPPARLPPRQPTXXXXXXXXXSPSSSFGRTGGYAPFGGDNV--WVPGNGRESRERPTTAAGTRVGGRGALAATASAAADGALAVEWMRTGRHPASMSKPRAAES 1321
            L KGF EINP IKK GGKVVALSSQTAEQVGR AHDMRLPFQAFGDPSNGLVDEMNIRFKMGCTVN+NDVV D+YPHGMAQPCVLAV TDDAQDEGSVLFRWNQWQTIASMRH DALAHITRALA K +EPEGGPSSGTPTAT+ VGLDGF TPP         ARLPPRQPT         SPSSSF RTGGYAPFGGD+V  WVPGN RESRERPTTAAGTR GGRGA+AATA AAADGALAVEWM+TGR PAS SKPRAA S
Sbjct:    6 LRKGFMEINPGIKKVGGKVVALSSQTAEQVGRGAHDMRLPFQAFGDPSNGLVDEMNIRFKMGCTVNQNDVVKDTYPHGMAQPCVLAVSTDDAQDEGSVLFRWNQWQTIASMRHVDALAHITRALAIKKNEPEGGPSSGTPTATSHVGLDGFATPPXXXXXXXXXARLPPRQPTLLRQPPRPGSPSSSFERTGGYAPFGGDDVGLWVPGNRRESRERPTTAAGTRGGGRGAIAATARAAADGALAVEWMKTGRDPASTSKPRAAGS 270          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11359.1725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJC2_9PHAE5.490e-22985.61AhpC-TSA domain-containing protein (Fragment) n=1 ... [more]
D8LHS8_ECTSI2.070e-13682.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11359contigEcto-sp8_S_contig11359:1325..6014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1407
Hectar predicted targeting categoryother localisation
Exons4
Cds size1314
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143212.145697-UTR-Ecto-sp8_S_contig11359:1324..14151681143212.145697-UTR-Ecto-sp8_S_contig11359:1324..1415Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11359 1325..1415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143212.1558702-CDS-Ecto-sp8_S_contig11359:1415..18661681143212.1558702-CDS-Ecto-sp8_S_contig11359:1415..1866Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11359 1416..1866 +
1681143212.1652222-CDS-Ecto-sp8_S_contig11359:4072..42351681143212.1652222-CDS-Ecto-sp8_S_contig11359:4072..4235Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11359 4073..4235 +
1681143212.1825333-CDS-Ecto-sp8_S_contig11359:4744..48891681143212.1825333-CDS-Ecto-sp8_S_contig11359:4744..4889Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11359 4745..4889 +
1681143212.19286-CDS-Ecto-sp8_S_contig11359:5459..60141681143212.19286-CDS-Ecto-sp8_S_contig11359:5459..6014Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11359 5460..6014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11359.1725.1prot_Ecto-sp8_S_contig11359.1725.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11359 1416..6014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11359.1725.1

>prot_Ecto-sp8_S_contig11359.1725.1 ID=prot_Ecto-sp8_S_contig11359.1725.1|Name=mRNA_Ecto-sp8_S_contig11359.1725.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=438bp
MGFQQAETPTFCAMALLASEHKLTMSNSLTSSRTSSPSPRITDDGPPPPD
HGWTATQPDYPSRFNEVVISDDGESSILSSQAPSTTAVAPAAAPSTPRSE
APRRRVLWTAFDSPPPGPGGGRELERRKATFKIFVIFRGSWCTSSQALLK
GFTEINPAIKKAGGKVVALSSQTAEQVGRAAHDMRLPFQAFGDPSNGLVD
EMNIRFKMGCTVNRNDVVTDSYPHGMAQPCVLAVFTDDAQDEGSVLFRWN
QWQTIASMRHADALAHITRALASKADEPEGGPSSGTPTATTRVGLDGFPT
PPSSAAAAPPPARLPPRQPTPLRQPPPAGSPSSSFGRTGGYAPFGGDNVW
VPGNGRESRERPTTAAGTRVGGRGALAATASAAADGALAVEWMRTGRHPA
SMSKPRAAESSGGHGGRAAEEEEEEEAPVQETSNGGGG
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mRNA from alignment at Ecto-sp8_S_contig11359:1325..6014+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11359.1725.1 ID=mRNA_Ecto-sp8_S_contig11359.1725.1|Name=mRNA_Ecto-sp8_S_contig11359.1725.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4690bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11359:1325..6014+ (Ectocarpus species8 EcLAC_412)
TTGCTGAGCAGCAACCTTGCGCCGCGCACGGCCTTACAAGGAAAACAAAG AGGGTCCCGCGGCGGTCAGTGCTGGGGGTGCACACTCTGGCATGGGCTTC CAGCAGGCGGAAACGCCGACCTTCTGCGCGATGGCTCTCCTCGCGTCCGA GCACAAGTTGACCATGAGCAACAGCCTCACGTCCAGCAGGACCTCGAGTC CATCGCCACGCATCACCGATGACGGCCCCCCACCTCCCGACCACGGGTGG ACAGCTACCCAGCCGGACTATCCGTCGCGGTTCAACGAGGTCGTCATCAG TGACGACGGCGAGAGCAGCATTCTGAGCAGCCAGGCTCCGTCGACGACAG CAGTAGCACCAGCAGCAGCACCTTCTACCCCGAGGTCGGAGGCGCCGCGG CGCAGAGTGCTTTGGACGGCGTTTGACTCCCCACCGCCGGGGCCGGGGGG AGGGAGGGAGCTCGAGAGACGGAAGGCGACGTTCAAGATTTTCGTTATAT TCAGGGGCAGTTGGTGCACTTCAAGCCAGGCACTCCTCAAAGGCGAGTTT GTTCAGCATCTATCTCCTTCTGTCCTTATTCTATCCATGCGAAGAAAGAC AAACCGCTCCACCTGACAAGCATTTTAGCATTTCATAGCACCAAAGGGGC AAAAGGGGTGTGTGCCTCATGTTGAACGAACTATGGAGATAAGGTTACCA GCACATAGTAGATGTGCAAGCACTGAGTGTCACCAGGCGCATGCCGCGGG AGGGCGTCTCCCCCTCAACCAAACACAACGCCCGTGGGTGCTGCTGCTGC CCCTATTTTATGAGCTGGCGGACAAAATGCATACAATTGGAGGCAATACT GCCACCATCCGGGGTAAAGGGGGATAGGGAGACTCGGAACAACGTCCCGT CCCACGTTGTTTGCATACATACAACACAACCAGCTCTCCCGGTACACGCG GGCGCACGTTGTTCCAACTAGCCCTTTTCTAGCACCTTTGTCTGTGACGT GTGGAAATGAGCAAAAGCGTCCCACACAACGACACGCTGTTTGTCGCGTC ACTTACATTTCCGGGAACGATCGAATGTTTCCTGGAAACGAAGCAGCTAC TTCAAAGCAAGTATGTTTTGGAGCGATTTATCGAATCTCTTCCTCCTGCG ACAAGTTTTACCCCCCTCCTGAGCTCTCTCCCCCCCGACCGCGCTGAGCA GCTAGCCCCCCCTCGTTACCACAGAGCCCTTTGAGATTACGTGTGCGTAC GTATGCATTTGTGCAACAGCAGCAGGATTACTGATGTACATTGCATACAT GAATAGGATACCCCACTTGTGGTTGTACATGGTATGCATAAAAGCATATA AGGATATATCCTTACCGGAGATTTCGTCACCCGCCGTGGATGGATTGTGG TCTACGGTATATACTACTGCTGTACCTGCTGTGTAAATGCTGCTGTACCT CCTTGCATACGGGTGGGTTTGAATTGAAGATGCACCATCACACGAAATAT GTAGAGTGGTTGTATGTGCTGCAGGCACTGCTATTCTATTTCAGCATGCC AGCAAAGCCACGCGATCGATCCGATCCTGCTTGCCTCTCCCAACTTTCTT CTTTTGCAACATATGGGAGCACCGCACACACCTGGTGGAACATCGCCAAC ATTTCCTTTTCTTTTCTCCAGCCAATCTCCGGCCGTCATTTATTGCAGTG GATTGTGTCCTACAGTAAATCTCAGGTACCCGTAAGAACGCTCTTAACAG GTTCGTATCTCTTTATTTTGGACTCGTTAAGGTTCGCCGGGTTCATCAAG TCGAAAGACGTCCGCTCTGTCAGCTACTATTACGCTTATTTAGAAATAGC AGACGTCCTTCTTGCTGGTATGCATAACCAACTGTGGGCTGGTCCTGCTC GGTTGCTCTTTTTATTTGCCATGTTGCATCATCAACCCTTGCTGAGCCCC GCGGGGCTCTCTTATGAGCCCACCCCCGCCGGGGGGATGTACATGCATAC ATGCATGACTGGAACGATGAAAATGATACATTGGCCCGAGTCGTTCAGCC CAACCGCTGGTGTCCTGCTTGTGAACAATCGTTTGCCTTCAGACCGTTCG TCATGTGAAACTACGCCCCGTTGCTCGCCCCACAACGGCAGCCACTGCCC TTACGAAGGACAATAGAAAGTAGAACATAGGTTCGCCCAGCTTGACACTT GCAGTGCTCGGCGAACCACAATACATCATTGTAGCCATACACAGCAGCAG TAGATGTTTCCCAGAACGCAACTATGTCGCACAACCATGCATAGCGTTCG TGTGATCGGGAGTCCCGTCTCCAAGATTTCGGGTAACTGCTGTATGCCTC TGATATTCGACGGTGCGTACGTAGATGTTCCACCCAAAATAAATCCCGAT ACTGCTCGTGTCATATCACACCGTTCAACACGGCCGGGTATACACCAACC CGACTTGGCGGTAGGCGAGGGAAAGCAACGGCTGCTGAAACATTTTCAGG GAGTCTTTACACTGCACGCGCATGCTGATGTCGAAGAATGACTCCCCGCT CGAGATAGATATTGACCTGCCCGAAGGGTTGTGTGTTGCAACGTTGCAAC CATTAACGCTAAAGAAAGCAGCGCGGAAGGAAGGCGGCAAAGAAAACCAA GTACACTTGGCACCCTGCACTGGCTGCTAGATCTCGAGCGAATACTTGAA TATTCCTGTGCTGCTGTTGTGTTCTTAACTTTTTTGGTCGTCCTGCAGGG TTCACGGAGATTAACCCGGCCATTAAGAAGGCCGGGGGAAAGGTGGTCGC CCTCAGCTCGCAGACAGCGGAGCAGGTGGGCCGGGCGGCGCATGACATGC GCCTCCCCTTCCAGGCGTTCGGAGACCCCAGCAACGGCCTCGTGGACGAG ATGAACATACGGTGAGAGAAGCGTTGTACGTGGAGGAGCGCACCATTTTT CGTGTTGTTGCCATACCGTGAGGGGAGAGGGGTACTACTTTTGTTTTCGG ATTTTTTTTGCCTTGCTTTGGCTGGCACGTTGCGAAAATAGCGCGTTGTT ACGAAAGGTTAAGGTTGGTGTTGTTGTCGTTGTGTTGTTCAAGCCGTTGG ATGGATCTCTCTCCGGCACGCCGTGGTGTTTTGGATGCCGTACAAAGTGA CACACGACAACGCCAACCCGGTGAGCGCAAACGTGGAGCGCGTTGGCCGC AGCTGTGGCGTGATGTAGGGGGAGGCTTCTCGCGCCATCCTTTTTGTCGA GGTACACCAGCCTGTGCCTGTTTCTTTTTTTTGCCGGGAATAATCTGTAT CCGTGATGGCGTTCCGCTGCCCGTGTGATATCTTCCGCGCGCCCGTGTAT TTGACACCCCCGCCACCCCCACCCCCCGTGCTTTCGTTGTCCTACTGTAT GTGCATACGTACCGCGAAAGGTTCAAGATGGGCTGCACCGTGAACCGGAA CGACGTGGTGACAGACTCCTACCCTCACGGGATGGCGCAACCGTGCGTGT TGGCCGTGTTTACCGACGATGCTCAAGACGAGGGATCGGTTTTGTTCAGA TGGAACCAGTGGCAGGTGCGTGGTAGAGGTGGTTTCTCACGCCAGGTCTT TCACAACAAAACCACAGCCGTTTTTTTTCCAGTCACTGCTGCAAGGACTT GACGCCATCCTCTTGGACTGTGGCTAGCGAGTAGTCTTTTTTGGATATGG ACATATCTTTTGGTTCATAGAAGCCAGGAAACATACGTGCTCTTTTGGCG CAGGAAACATGACTTGTGATTGCCCCAACTGGTTTCTAAAATGTTTGAGG AGCAAGTGCGTGACGGACTTGCCTGGCCAAGACTTGCATGGTTGCCGTGC TCAAGGACGGAGAAGTCGCTCAACACCAACAGCGAATTCGGTATTTTTCT TTTTGAGATTTCGTTCCTGTGTCCTGTGGTTTGGTTCGATCGAAACTGGG CTGCTGCTGTGGGTCGCGCGCGTTCGTAGCCAACCTCGCTTGTGCTCCCG TTACCGTTTCCAGCGAGCGGCGTGCCCGTCTAGGCAAAGTTAAGTACGAT ATTGTAGTCACCTCCATTCTCCCCCCACACCTCTGACCCTCTCGCCCCCC CCTCTCTCTTGTCATCCACCCCCCCCCACGTCCAGACGATCGCGTCCATG AGGCACGCCGACGCCTTGGCGCACATCACCAGGGCGCTTGCCTCCAAGGC GGACGAACCAGAAGGTGGCCCCTCCTCCGGCACACCGACGGCGACAACGC GCGTCGGCCTCGACGGCTTCCCCACCCCGCCCTCCTCCGCCGCTGCCGCG CCGCCGCCGGCTCGACTCCCTCCCCGCCAGCCCACGCCCCTCCGACAACC GCCGCCCGCGGGCTCGCCGTCATCATCGTTTGGAAGAACTGGCGGGTACG CGCCGTTTGGGGGCGACAACGTGTGGGTCCCGGGTAACGGACGGGAATCC CGCGAACGTCCCACCACCGCCGCCGGTACCCGCGTCGGCGGGCGGGGGGC GTTGGCGGCAACGGCGAGCGCTGCTGCGGACGGGGCGCTCGCGGTCGAGT GGATGAGAACGGGCCGACACCCGGCTTCAATGTCGAAGCCGCGGGCGGCG GAGAGCAGCGGCGGCCACGGCGGTAGAGCAGCGGAGGAAGAGGAGGAGGA GGAGGCGCCCGTCCAGGAAACAAGCAACGGCGGCGGAGGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11359:1325..6014+

>mRNA_Ecto-sp8_S_contig11359.1725.1 ID=mRNA_Ecto-sp8_S_contig11359.1725.1|Name=mRNA_Ecto-sp8_S_contig11359.1725.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1314bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11359:1325..6014+ (Ectocarpus species8 EcLAC_412)
ATGGGCTTCCAGCAGGCGGAAACGCCGACCTTCTGCGCGATGGCTCTCCT
CGCGTCCGAGCACAAGTTGACCATGAGCAACAGCCTCACGTCCAGCAGGA
CCTCGAGTCCATCGCCACGCATCACCGATGACGGCCCCCCACCTCCCGAC
CACGGGTGGACAGCTACCCAGCCGGACTATCCGTCGCGGTTCAACGAGGT
CGTCATCAGTGACGACGGCGAGAGCAGCATTCTGAGCAGCCAGGCTCCGT
CGACGACAGCAGTAGCACCAGCAGCAGCACCTTCTACCCCGAGGTCGGAG
GCGCCGCGGCGCAGAGTGCTTTGGACGGCGTTTGACTCCCCACCGCCGGG
GCCGGGGGGAGGGAGGGAGCTCGAGAGACGGAAGGCGACGTTCAAGATTT
TCGTTATATTCAGGGGCAGTTGGTGCACTTCAAGCCAGGCACTCCTCAAA
GGGTTCACGGAGATTAACCCGGCCATTAAGAAGGCCGGGGGAAAGGTGGT
CGCCCTCAGCTCGCAGACAGCGGAGCAGGTGGGCCGGGCGGCGCATGACA
TGCGCCTCCCCTTCCAGGCGTTCGGAGACCCCAGCAACGGCCTCGTGGAC
GAGATGAACATACGGTTCAAGATGGGCTGCACCGTGAACCGGAACGACGT
GGTGACAGACTCCTACCCTCACGGGATGGCGCAACCGTGCGTGTTGGCCG
TGTTTACCGACGATGCTCAAGACGAGGGATCGGTTTTGTTCAGATGGAAC
CAGTGGCAGACGATCGCGTCCATGAGGCACGCCGACGCCTTGGCGCACAT
CACCAGGGCGCTTGCCTCCAAGGCGGACGAACCAGAAGGTGGCCCCTCCT
CCGGCACACCGACGGCGACAACGCGCGTCGGCCTCGACGGCTTCCCCACC
CCGCCCTCCTCCGCCGCTGCCGCGCCGCCGCCGGCTCGACTCCCTCCCCG
CCAGCCCACGCCCCTCCGACAACCGCCGCCCGCGGGCTCGCCGTCATCAT
CGTTTGGAAGAACTGGCGGGTACGCGCCGTTTGGGGGCGACAACGTGTGG
GTCCCGGGTAACGGACGGGAATCCCGCGAACGTCCCACCACCGCCGCCGG
TACCCGCGTCGGCGGGCGGGGGGCGTTGGCGGCAACGGCGAGCGCTGCTG
CGGACGGGGCGCTCGCGGTCGAGTGGATGAGAACGGGCCGACACCCGGCT
TCAATGTCGAAGCCGCGGGCGGCGGAGAGCAGCGGCGGCCACGGCGGTAG
AGCAGCGGAGGAAGAGGAGGAGGAGGAGGCGCCCGTCCAGGAAACAAGCA
ACGGCGGCGGAGGA
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