mRNA_Ecto-sp8_S_contig11283.1647.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11283.1647.1
Unique NamemRNA_Ecto-sp8_S_contig11283.1647.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11283.1647.1 vs. uniprot
Match: D8LPV7_ECTSI (PX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPV7_ECTSI)

HSP 1 Score: 442 bits (1138), Expect = 2.130e-155
Identity = 238/254 (93.70%), Postives = 241/254 (94.88%), Query Frame = 1 
Query:    1 RSVTVDGIAVQGAESAPPPSGGSLKKTVTMRVRVGSHDCWVGYRASARPGRYFYSCIIDGVVMPELNDTVGDTGDDEGVPLPGEVFIDSIEPAKDRFGTEFLEFRVVTLRGTRRRXXXXXXXXXXXXXXXXXXXXCYHAVVWRRFSAFRSLHSDVTAMLWGSHLLDSLPPLPGKPKCINPLVNQMGAAFLESRREVLQAYLRRLLEVPKARASVNLMVFLGLHPITGYPLPWAALSPSAPRQAAPLDDEGRREL 762
            RSVTVDGIAVQGAESAPPP GGSLKKTVT++VRVGSHDCWVGYRASARPGRYFYSCIIDGVVMPELNDTVGDTGDDEGVPLPGEVFIDSIEPAKDRFGTEFLEFRVVTLRGTRRR    XXXXXXXXXXXXX   CYHAVVWRRFSAFRSLHSDVTAMLWGSHLLDSLPPLP K  CINPLVNQMGAAFLESRREVLQAYLRRLLEVPKARASVNLM FLGLHPITGYPLPWAAL+PS PRQAAPLDDEGRREL
Sbjct:   47 RSVTVDGIAVQGAESAPPPGGGSLKKTVTLKVRVGSHDCWVGYRASARPGRYFYSCIIDGVVMPELNDTVGDTGDDEGVPLPGEVFIDSIEPAKDRFGTEFLEFRVVTLRGTRRRDSCGXXXXXXXXXXXXXG--CYHAVVWRRFSAFRSLHSDVTAMLWGSHLLDSLPPLPAK--CINPLVNQMGAAFLESRREVLQAYLRRLLEVPKARASVNLMGFLGLHPITGYPLPWAALAPSTPRQAAPLDDEGRREL 296
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BLAST of mRNA_Ecto-sp8_S_contig11283.1647.1 vs. uniprot
Match: A0A835YSM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSM5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.540e-11
Identity = 41/82 (50.00%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:  421 VWRRFSAFRSLHSDVTAMLWGSHLLDSLPPLPGKPKCINPLVNQMGAAFLESRREVLQAYLRRLLEVPKARASVNLMVFLGL 666
            V RR++ F  LH     M+ G HL DSLPPLP    C +PL+++  AAF+ESRR  LQAYLR LL VP          FLGL
Sbjct:  238 VHRRYTDFEMLHQQCDGMMKGHHLSDSLPPLP----CKSPLLDRSDAAFIESRRAELQAYLRTLLRVPHVGGLDTTRAFLGL 315
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BLAST of mRNA_Ecto-sp8_S_contig11283.1647.1 vs. uniprot
Match: A0A6U1LL59_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LL59_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.000e-9
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  409 YHAVVWRRFSAFRSLHSDVTAMLWGSHLLDSLPPLPGKPKCINPLVNQMGAAFLESRREVLQAYLRRLLEVPKARASVNLMVFLGL 666
            +H VV RRFS F  L + + +  W  HL  +LP LP K   I  +++     F+E RR  L+AYL+RL++VP A ++ +L  FLG+
Sbjct:   16 FHYVVTRRFSDFDRLDNHIKSAFWRHHLRSNLPCLPAKK--IKYVIDHSQTDFVEQRRLDLEAYLKRLVQVPHASSNPDLHQFLGI 99
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11283.1647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LPV7_ECTSI2.130e-15593.70PX domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A835YSM5_9STRA5.540e-1150.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1LL59_9STRA5.000e-940.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11283contigEcto-sp8_S_contig11283:553..4026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score392.5
Seed ortholog evalue1.3e-106
Seed eggNOG ortholog2880.D8LPV7
Model size765
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.PX domain
EggNOG OGs2D5A9@1,2SXWF@2759
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-02_004250.1
Cds size678
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11283.1647.1prot_Ecto-sp8_S_contig11283.1647.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11283 553..3939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143206.9403577-CDS-Ecto-sp8_S_contig11283:552..7121681143206.9403577-CDS-Ecto-sp8_S_contig11283:552..712Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11283 553..712 -
1681143206.9518325-CDS-Ecto-sp8_S_contig11283:1150..12321681143206.9518325-CDS-Ecto-sp8_S_contig11283:1150..1232Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11283 1151..1232 -
1681143206.9614623-CDS-Ecto-sp8_S_contig11283:1874..21101681143206.9614623-CDS-Ecto-sp8_S_contig11283:1874..2110Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11283 1875..2110 -
1681143206.9707754-CDS-Ecto-sp8_S_contig11283:2874..29971681143206.9707754-CDS-Ecto-sp8_S_contig11283:2874..2997Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11283 2875..2997 -
1681143206.9806354-CDS-Ecto-sp8_S_contig11283:3862..39391681143206.9806354-CDS-Ecto-sp8_S_contig11283:3862..3939Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11283 3863..3939 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143206.9901333-UTR-Ecto-sp8_S_contig11283:3939..40261681143206.9901333-UTR-Ecto-sp8_S_contig11283:3939..4026Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11283 3940..4026 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11283.1647.1

>prot_Ecto-sp8_S_contig11283.1647.1 ID=prot_Ecto-sp8_S_contig11283.1647.1|Name=mRNA_Ecto-sp8_S_contig11283.1647.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=226bp
MRVRVGSHDCWVGYRASARPGRYFYSCIIDGVVMPELNDTVGDTGDDEGV
PLPGEVFIDSIEPAKDRFGTEFLEFRVVTLRGTRRRDSGGGGGGGGAGKA
VDGGGGCYHAVVWRRFSAFRSLHSDVTAMLWGSHLLDSLPPLPGKPKCIN
PLVNQMGAAFLESRREVLQAYLRRLLEVPKARASVNLMVFLGLHPITGYP
LPWAALSPSAPRQAAPLDDEGRREL*
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mRNA from alignment at Ecto-sp8_S_contig11283:553..4026-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11283.1647.1 ID=mRNA_Ecto-sp8_S_contig11283.1647.1|Name=mRNA_Ecto-sp8_S_contig11283.1647.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3474bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11283:553..4026- (Ectocarpus species8 EcLAC_412)
AGGAGTGTCACGGTCGATGGCATCGCCGTCCAAGGCGCGGAGAGCGCGCC
CCCCCCCAGCGGCGGCAGCTTGAAGAAGACGGTCACCATGAGGGTCCGTG
TCGGGAGCCATGACTGCTGGGTGGGGTACAGGGCGTCGGCGCGACCCGGG
CGGTACTTTTACAGGTGCGTGACGAAATAAGAGACAAAACACAAAAAAGT
GCATGTGTTATATGAAATGTATCCACCTACATATGCAGATGCTCTTGTTC
TTAGCACCAGCCGGCATCACTGATGAAATTCAGTGTGTGTGCTTAAATAG
ACCCTAGCTAAGCCCAGTTTCCAGCCGGTTTCCCTCCACTCACTGGAAAG
CCTTGAGCACGTCCCTTTCGACTGGTGTGGTTTTATCTCGAATGGGTAGC
CTTTCTGTGAGATTATTTTTACTTATAAAATCGATCCAGACCGGAAACGG
TCGAAGGGGTGGGCTGGTTTTCTTCTGGCCGGGGGGGGGGTGTCTCTTGC
TTTTGTCGATTTGATGTCGATGGTGAAGGCAGTGAAAGAAGGAAACAGGG
GAGAGAGCGGGTGGTTGATCGACCGCGGTGTGCGTTATTCATCGTTGTTG
CTGTTGATGCTGCTGTTGTTGTTGTTGTTGCTGTGGTGGTGGTGGTGGTG
GTGTTGGCGGCGATCATGATGTGGCCATTGTGCGTGGTCGTGGTGTTTGA
TGATGCGAGGTACACTGCTGTACACTGCTCCGCCCCCCCCCCCTATGCGG
TGCGTTTGTTTCTGGTCTCAGCGGTGTTTTTCTTCACGTTGAGACATGGC
CCATGCCCACGTCGACAAATGTTTCGGCTGTCCACGTCTTTGCTCTGTTT
GCCGCGAAATGCCGGTGCCCCTTTGATGTTTCCTACACTGGTGACGCTAT
CACCATACATGTAGCCCCAAAAAACCAACATCGCCGCCGCCACCACCACC
ACAAACAACAACAACAACAACACGTCACCGCCCCGAACAACAACGACCGT
GTTTGATAAAACCGCCCACGTCACCACAGCTGTATCATCGACGGCGTCGT
CATGCCGGAGCTCAACGATACCGTCGGCGACACGGGGGACGATGAGGGTG
TTCCTCTGCCGGGGGAGGTCTTCATCGACAGCATCGAGCCTGCCAAGGAC
AGGTACAAGTACTGCTGTACCTCTTTTTTGCGACAACGACGACGAATGCC
TCCGGACGTATGACCGAACGCTCGAAAGCAGCATTCTGGTCCATCATCAA
CGTTTTCGGTACTACGTACGTGTACATGTTTTGGTTCGTAGCGTTTCTCT
GTACTGCACGCTTTTGGTGCGCTAACGTTTGCTGTTGCGCCCCCTCACGC
GCGAGTTGCTGGGAGCCGTGTGTGTGTGTGTGTGTGTGCGTGCCGTTCAC
CCCTTCGCGTGCCGGTACAAGCATGTTGGGGAGCGTCGTGGAATGTCAGA
CGATTCTGAAACGTGGGATTTTTGCCCCCCTCTGCCTGTCAGCGTCGAGT
GTACAGTAGGTTGCATAGCACATCATCGGGAGCGCCTGACGCGGCTCGTC
ACGCTTGCTCTTCCCCCCCTCTCCCCCGCTGCTCTCCGTGGTTTTGGGGT
AGACCTTCCCTTCCCGCTTGTCACGCCTTTTTCTGGACAAAAAAAAGAAA
TTCGTGTGTTCCGTTGCCAATGCGCAGGATACCCAGCAGATTGGAGTCCG
CCTATTTAGTCTACACACGTGTGGCGCCGTTTCACGTTGTTGCTATCTGT
GAACCACCGCTGTACCACGCAACTTACGCAGAAGGAAGGACCGGGCGTAA
CTTCTGTGCCACCGATGTCGGCGCTCAACAAACACACAAATACGCGTACC
CCCCCCCCCCCCTGGACCGCATAATTCGTGATTCCGCGGGGCCTCGCTCT
GTCTCGACCGCACCAGGTTCGGCACAGAGTTTCTAGAGTTTCGAGTGGTG
ACTCTTCGCGGCACGAGACGAAGAGATAGCGGTGGCGGCGGCGGCGGCGG
CGGGGCGGGTAAGGCGGTTGACGGGGGCGGCGGGTGTTACCACGCGGTCG
TGTGGAGGCGTTTCTCGGCGTTCCGATCGCTGCACAGCGACGTGACGGCC
ATGCTGTGGGGGTCCCACCTGCTGGACAGCCTTCCCCCTCTGCCAGGCAA
GCGTCGGCCCTCCGCGAACAAAATTGTTTGTGCTGGTGGAGAAAGTACGA
TAGGTTTCATGATTCTCCTCTACTGTGGTGCCTACGTAGCAAGAGTTGCT
CCTATCTTGTCACTTGCTCTACGTTCTACATGTACGGTTGTCGAAAAGTG
CAAGTGGTTCTGGAGGGGGGATTGTACATGAACGTCCGGCGTTGGACAGC
AACCAACGTCTTCGCCCTTTTCGCAGGCGAGAATTGAACTATAAATATTT
CTCTGCGTCAAGAACAGCCGCCTCTTGTTTTGCATCTGCTGTCCCGGCCT
TGCATCCTTCACGTGTGTACACGCCTCTTCTTACGTGTTCGGACGACGTC
CCAAACAGTCTCCCTCTCCGTCCAACCTTCCGCCCCCGCTCCCCCTCCCC
TCTCTCACGACAGTCTGCTTGCCAAGAGTATCTCGATGACCATGCTTCTC
CCCCTCCGATGTCACTTCTTCTACTGGTCCTGATTTCCTAGGTCCTGAAT
TCCTAGAAACAGTTCACTCTCGCGTGCGCATGACAGAAAGTGTGGTGACA
GCTCGTTCTTCTCGTGTCTGACTTGTCTCCTCTCCGGCCCGCGTGTCTTG
GCGTCCGTAATCTCGCCGCGTTCCTTCAATGCCGTCGCCAACAGCGAAGT
GCATCAACCCGTTGGTGAACCAGATGGGCGCGGCGTTCTTGGAGAGCAGA
AGGGAAGTGCTCCAAGCGTACCTCAGGTGATGACGACAGCCTGCTGGCTG
CTCTCTTTTTCCTCCTCCTGTCCGGTCTCTTGTCCCTCTTGACCTCAAGG
TGGCAGGCTGGCTGCTCTCTTTTCCTCCTCTCTTGTCTCTGTATTTCTTG
GCCTCAGGCGACAGGAGGCATTTTCCTCTCTTTTCCTCCTCTCTTTGTGT
ATTTTCTCTCTTGACGTCGACGCTTGACCTTGTGCGCGTGTATGCCATGA
CCCCGCTCTCGGAAGGAGACCCCCACACGTGAACCATTCCGAGTTGTTTT
GGGCTGTGTTACCGCAGTGCTGCCTCCCCCTCTCATGCATCAGGCACACA
CGAATACGCACTCTCACCCATTAACCAGCCCCACTTCTTAAACAGACCAT
TGACTTACAAATCAACCCCCGCCTGCCTGTGTTGGCGTCCTCGCCGCCGC
CGTGTCCCCAAAAGGCGTTTGCTCGAGGTTCCCAAGGCGCGAGCGTCGGT
CAACCTGATGGTATTTTTAGGTCTCCACCCCATCACCGGATACCCGTTGC
CTTGGGCGGCGTTGTCTCCTTCTGCTCCTCGGCAGGCGGCACCGCTCGAT
GACGAGGGGCGACGGGAGTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11283:553..4026-

>mRNA_Ecto-sp8_S_contig11283.1647.1 ID=mRNA_Ecto-sp8_S_contig11283.1647.1|Name=mRNA_Ecto-sp8_S_contig11283.1647.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=678bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11283:553..4026- (Ectocarpus species8 EcLAC_412)
ATGAGGGTCCGTGTCGGGAGCCATGACTGCTGGGTGGGGTACAGGGCGTC
GGCGCGACCCGGGCGGTACTTTTACAGCTGTATCATCGACGGCGTCGTCA
TGCCGGAGCTCAACGATACCGTCGGCGACACGGGGGACGATGAGGGTGTT
CCTCTGCCGGGGGAGGTCTTCATCGACAGCATCGAGCCTGCCAAGGACAG
GTTCGGCACAGAGTTTCTAGAGTTTCGAGTGGTGACTCTTCGCGGCACGA
GACGAAGAGATAGCGGTGGCGGCGGCGGCGGCGGCGGGGCGGGTAAGGCG
GTTGACGGGGGCGGCGGGTGTTACCACGCGGTCGTGTGGAGGCGTTTCTC
GGCGTTCCGATCGCTGCACAGCGACGTGACGGCCATGCTGTGGGGGTCCC
ACCTGCTGGACAGCCTTCCCCCTCTGCCAGGCAAGCCGAAGTGCATCAAC
CCGTTGGTGAACCAGATGGGCGCGGCGTTCTTGGAGAGCAGAAGGGAAGT
GCTCCAAGCGTACCTCAGGCGTTTGCTCGAGGTTCCCAAGGCGCGAGCGT
CGGTCAACCTGATGGTATTTTTAGGTCTCCACCCCATCACCGGATACCCG
TTGCCTTGGGCGGCGTTGTCTCCTTCTGCTCCTCGGCAGGCGGCACCGCT
CGATGACGAGGGGCGACGGGAGTTGTGA
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