mRNA_Ecto-sp8_S_contig1128.1645.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1128.1645.1
Unique NamemRNA_Ecto-sp8_S_contig1128.1645.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1128.1645.1 vs. uniprot
Match: A0A6H5JSE7_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE7_9PHAE)

HSP 1 Score: 677 bits (1746), Expect = 4.380e-238
Identity = 394/499 (78.96%), Postives = 405/499 (81.16%), Query Frame = 1 
Query:    1 RWVKDSRKMRKNDSLTSRERTSSAQADKSSQEKAVLKGTLATLTRGASSRRIRSESPPSLIVRSVNRLGRKSPSGEHQVTPGSVSSGRSEGCRKSSWFSRHSRSPRQQLSSRPTSPVGMVHGQITARSCTTPVPQPSLMDILENTAEEPMSLRSMLRFARENLMEENVLFYLEVVSFKTGGGGRCEYLTTIKRIHELYIQHNSKREINISGHMRLNTMATVEAILRADGCSSGGSTGAPGNVELRVAGDEVERQPAETNVVEAEG--------------------------------------------VDVATAPKLGHADGEEAGASIAEAVMADEGQEGSRAPGSLPLLDPVPTQSPTHKAIVSGNSSSSSSPATESVTPAAVEEERERDAADNAASAGRFTVLGKCRSDSPSSKEISSSSRDGEQDGDT----EEEIRLRRDSTMWDDRCLYSADLAAEDDFNASVEIEQLGLGIGPGGGYGDRTIFDSALLEAS 1353
            R VKDSRKMRK D LTSR RTSSAQA+KS QEKAVL+GT A LTRG SS RIRSESPPSLIVR+ + LGRKS  GEHQV  GS SSGRSEG RK  WFSRHSRSP QQLSS PTSPVGM+HGQIT RSCTTPVPQPSLM+ILENTAEEPMSLRSMLRFARENLMEENVLFYLEVVSFKTGGGGRCEYLT IKRIHELYIQHNSKREINISG MRLNTMATVEAILRADG SSGGS  +PGNVELR AGDEVERQPAETNVVEA G                                            VDVAT PK GHADGEEAG S+AEAV+ADEGQEGSRAPGSLPLLD VPTQ PTHKAIVSGNSSSS SPATESVTPAAVEEE ERDAADNAASAGRFTVLGKCRSDSPSSKEISSSS             EEEIRLRRDSTMWDDRCL+SADLAAEDDFNASVEIE LGLGIGPGGGYGDRTIFDSALLEA+
Sbjct:  103 RRVKDSRKMRKKDGLTSRARTSSAQAEKS-QEKAVLQGTFARLTRGTSSGRIRSESPPSLIVRNAHPLGRKSSWGEHQVALGSASSGRSEGYRKKPWFSRHSRSPSQQLSSNPTSPVGMIHGQITPRSCTTPVPQPSLMEILENTAEEPMSLRSMLRFARENLMEENVLFYLEVVSFKTGGGGRCEYLTNIKRIHELYIQHNSKREINISGQMRLNTMATVEAILRADGQSSGGSADSPGNVELRAAGDEVERQPAETNVVEAGGGGCFEAATPAAETPAATGSEXXXXXXXXXXXXXXXXAKSVGVEDVDVATVPKFGHADGEEAGVSVAEAVIADEGQEGSRAPGSLPLLDSVPTQLPTHKAIVSGNSSSSGSPATESVTPAAVEEETERDAADNAASAGRFTVLGKCRSDSPSSKEISSSSXXXXXXXXXXXXXEEEIRLRRDSTMWDDRCLHSADLAAEDDFNASVEIELLGLGIGPGGGYGDRTIFDSALLEAN 600
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1128.1645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSE7_9PHAE4.380e-23878.96RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1128contigEcto-sp8_S_contig1128:13091..15844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1617
Hectar predicted targeting categoryother localisation
Exons4
Cds size1593
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143206.809986-UTR-Ecto-sp8_S_contig1128:13090..131141681143206.809986-UTR-Ecto-sp8_S_contig1128:13090..13114Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1128 13091..13114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143206.8190908-CDS-Ecto-sp8_S_contig1128:13114..133241681143206.8190908-CDS-Ecto-sp8_S_contig1128:13114..13324Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1128 13115..13324 +
1681143206.828555-CDS-Ecto-sp8_S_contig1128:13587..138391681143206.828555-CDS-Ecto-sp8_S_contig1128:13587..13839Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1128 13588..13839 +
1681143206.8402302-CDS-Ecto-sp8_S_contig1128:14372..152601681143206.8402302-CDS-Ecto-sp8_S_contig1128:14372..15260Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1128 14373..15260 +
1681143206.8537567-CDS-Ecto-sp8_S_contig1128:15601..158441681143206.8537567-CDS-Ecto-sp8_S_contig1128:15601..15844Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1128 15602..15844 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1128.1645.1prot_Ecto-sp8_S_contig1128.1645.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1128 13115..15844 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1128.1645.1

>prot_Ecto-sp8_S_contig1128.1645.1 ID=prot_Ecto-sp8_S_contig1128.1645.1|Name=mRNA_Ecto-sp8_S_contig1128.1645.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=531bp
MRKNDSLTSRERTSSAQADKSSQEKAVLKGTLATLTRGASSRRIRSESPP
SLIVRSVNRLGRKSPSGEHQVTPGSVSSGRSEGCRKSSWFSRHSRSPRQQ
LSSRPTSPVGMVHGQITARSCTTPVPQPSLMDILENTAEEPMSLRSMLRF
ARENLMEENVLFYLEVVSFKTGGGGRCEYLTTIKRIHELYIQHNSKREIN
ISGHMRLNTMATVEAILRADGCSSGGSTGAPGNVELRVAGDEVERQPAET
NVVEAEGVDVATAPKLGHADGEEAGASIAEAVMADEGQEGSRAPGSLPLL
DPVPTQSPTHKAIVSGNSSSSSSPATESVTPAAVEEERERDAADNAASAG
RFTVLGKCRSDSPSSKEISSSSRDGEQDGDTEEEIRLRRDSTMWDDRCLY
SADLAAEDDFNASVEIEQLGLGIGPGGGYGDRTIFDSALLEASAHLQAGL
IFVILRHQVYPKFVARVANSSSCHSSTSSTTVHTATLSTTSISTTTLGTP
VKPIKANRVSLSQSEEVAKAVRAELAKCYF*
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mRNA from alignment at Ecto-sp8_S_contig1128:13091..15844+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1128.1645.1 ID=mRNA_Ecto-sp8_S_contig1128.1645.1|Name=mRNA_Ecto-sp8_S_contig1128.1645.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2754bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1128:13091..15844+ (Ectocarpus species8 EcLAC_412)
CGCTGGGTCAAGGACTCTCGGAAAATGAGAAAAAACGACAGCCTCACGTC
GCGAGAGCGCACAAGCAGTGCACAAGCGGACAAATCTTCTCAAGAGAAGG
CAGTGCTAAAAGGAACGTTGGCGACATTGACTCGAGGGGCGTCCTCACGG
CGTATTCGCAGCGAGTCGCCTCCGTCCTTGATCGTACGAAGTGTTAACCG
TCTTGGTCGGAAATCGCCATCGGGGGAACATCAGGTGCCGTGCCACCCTC
GTATGATTTTAAGCGCTCCTCCTGTTGATCTCTCTCGTGATGTTGTTCTC
ATTTACCGAATGACACCCGGGCTCCCAACTCTCCACCATCAATAGCACGT
GGCATGAGCTACAGTCAGTTCCAAGTACCTTAGACAGCAGCAGCCAGATT
GGTCGTTAACTGTTGTAAGGTACAAACACAAACTATTCCGCTTCCGTTGT
CATCTACTGAAGTATCTATCGCTTCAAACCAAACGTTGCTCTACTAGGTG
ACGCCAGGCTCGGTATCTTCGGGACGATCGGAGGGATGCAGAAAAAGTTC
GTGGTTTTCGCGACACTCTCGAAGCCCACGCCAACAGCTCTCCTCGCGCC
CAACCAGTCCGGTCGGCATGGTCCACGGACAGATCACGGCAAGGTCTTGC
ACGACGCCCGTTCCTCAGCCGTCATTGATGGACATCCTCGAAAACACTGC
CGAGGAACCCATGTCCCTGCGGTCCATGCTGCGCTTCGCTAGAGAAAACG
TGAGTGGTAGATAAACTTCCATGTCGGTGTTAACGTGAAGGGCCCGTTGG
TTGAAGATGTTCTGAAAAATGCGTAGCGGGTCAAATCGCTCTGGTTCACG
GCACTGACTGGGAACTACTGTATGTAACTGTTCGTTGGTTGGGTATTGCG
TGTAGAGGGTAGAGGCAGATATCGCGGGAGTCGGCGGATGGATGGAGACC
GTCGGAGCACTACTAGCGTCCTGGGTTAGCACTGCCAGATGTTTGGTACT
CCGTGGATGCACGCCCACAACATTTTGAACAATAGCATTGCTTTGAGGCG
GTTCAATTGTGTTCGTCAGTGTGGTAGATTTGCAGGACTTGCAAAGCTAC
CATCCCCCAGTTGAATGTTGCCGGAACTCTTTTTTATCTGGAACTTTCAC
GGTTTAGAGAAGGATATTTTGGGGGCACTGACTGCGATAAACTGGAGGGG
CTTACGTTCTACTTCCCGTGGGGGTGTCCTGTTGTTCGCTATTGCTGCCG
TCGTCTGGTGTCGACCGGTTCCCTTCGATCAGCTGATGGAAGAGAATGTT
CTGTTTTACCTTGAGGTGGTCTCGTTTAAAACGGGTGGCGGCGGGCGGTG
CGAGTACCTCACAACCATCAAGAGGATCCACGAGCTCTACATCCAGCACA
ACAGCAAGAGGGAGATAAACATCAGCGGTCACATGCGCTTGAACACGATG
GCCACCGTGGAAGCTATCTTGAGGGCAGACGGCTGTAGCAGCGGCGGCAG
CACCGGCGCTCCCGGCAATGTCGAGCTGCGGGTTGCAGGCGACGAGGTAG
AGAGACAGCCAGCGGAGACTAACGTAGTCGAAGCAGAAGGAGTCGATGTC
GCAACAGCACCAAAATTAGGTCATGCGGACGGTGAAGAAGCAGGGGCAAG
TATTGCAGAAGCAGTCATGGCTGACGAGGGCCAGGAGGGTTCGCGAGCTC
CCGGCTCACTCCCTCTACTCGATCCAGTTCCGACCCAATCGCCGACCCAC
AAGGCCATCGTTAGCGGCAACAGCAGCAGCAGCAGCAGTCCTGCGACAGA
GAGTGTGACCCCGGCTGCTGTCGAGGAAGAAAGAGAGAGAGACGCCGCTG
ACAACGCCGCTTCCGCCGGAAGATTCACGGTACTGGGCAAGTGTCGGTCA
GATTCACCCTCATCCAAGGAGATCAGCAGCAGCAGCAGGGACGGCGAGCA
AGATGGTGACACGGAGGAAGAAATTAGGCTACGACGGGATTCCACCATGT
GGGACGATCGCTGTTTGTATAGCGCCGACCTCGCGGCAGAGGACGACTTC
AATGCGAGCGTAGAAATTGAACAGCTGGGGCTCGGGATAGGGCCCGGGGG
TGGCTATGGCGACCGAACAATCTTTGACTCGGCACTCCTTGAGGCGAGTG
CACACCTTCAGGCCGGTCTGGTTGCCGGTGTTCGTGCAATCGATAATAAA
TGCTCTTTCGCCGTACCAAGTTCTCATGTAGTGGCACCCACTGAACGGTA
CTGTTTGTTGCTTCTCGTGAACATCTTGCACACGTCTTCTATTTACCCAG
CAGCTTGCTCGACTATACAGTATCTGCTATACCGCAGGACGGTACGATAC
ACTTCCCCTTCTTCGACGAGACCATCCCGAAAGGATCCCATTCCGTCCCG
TAAACCTCGGAAAACATTGCCCCGCACGCCCATCTCGATTCTACAACCCT
TTTCTTCCTCCTGCCCGCTGACTTAAGTATTTTGACTTCCCCAACTACGC
TCGAAACACAGATCTTCGTCATACTTCGTCATCAAGTTTACCCGAAGTTC
GTGGCACGGGTAGCTAATAGCAGCAGCTGCCATTCCTCAACGTCATCGAC
AACCGTCCATACCGCAACGTTATCGACGACTTCGATATCAACAACAACAC
TGGGAACCCCCGTCAAGCCCATCAAAGCGAACAGGGTTTCGTTGTCGCAG
TCGGAGGAGGTTGCAAAGGCGGTGAGGGCTGAGCTTGCGAAATGCTACTT
CTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1128:13091..15844+

>mRNA_Ecto-sp8_S_contig1128.1645.1 ID=mRNA_Ecto-sp8_S_contig1128.1645.1|Name=mRNA_Ecto-sp8_S_contig1128.1645.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1593bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1128:13091..15844+ (Ectocarpus species8 EcLAC_412)
ATGAGAAAAAACGACAGCCTCACGTCGCGAGAGCGCACAAGCAGTGCACA
AGCGGACAAATCTTCTCAAGAGAAGGCAGTGCTAAAAGGAACGTTGGCGA
CATTGACTCGAGGGGCGTCCTCACGGCGTATTCGCAGCGAGTCGCCTCCG
TCCTTGATCGTACGAAGTGTTAACCGTCTTGGTCGGAAATCGCCATCGGG
GGAACATCAGGTGACGCCAGGCTCGGTATCTTCGGGACGATCGGAGGGAT
GCAGAAAAAGTTCGTGGTTTTCGCGACACTCTCGAAGCCCACGCCAACAG
CTCTCCTCGCGCCCAACCAGTCCGGTCGGCATGGTCCACGGACAGATCAC
GGCAAGGTCTTGCACGACGCCCGTTCCTCAGCCGTCATTGATGGACATCC
TCGAAAACACTGCCGAGGAACCCATGTCCCTGCGGTCCATGCTGCGCTTC
GCTAGAGAAAACCTGATGGAAGAGAATGTTCTGTTTTACCTTGAGGTGGT
CTCGTTTAAAACGGGTGGCGGCGGGCGGTGCGAGTACCTCACAACCATCA
AGAGGATCCACGAGCTCTACATCCAGCACAACAGCAAGAGGGAGATAAAC
ATCAGCGGTCACATGCGCTTGAACACGATGGCCACCGTGGAAGCTATCTT
GAGGGCAGACGGCTGTAGCAGCGGCGGCAGCACCGGCGCTCCCGGCAATG
TCGAGCTGCGGGTTGCAGGCGACGAGGTAGAGAGACAGCCAGCGGAGACT
AACGTAGTCGAAGCAGAAGGAGTCGATGTCGCAACAGCACCAAAATTAGG
TCATGCGGACGGTGAAGAAGCAGGGGCAAGTATTGCAGAAGCAGTCATGG
CTGACGAGGGCCAGGAGGGTTCGCGAGCTCCCGGCTCACTCCCTCTACTC
GATCCAGTTCCGACCCAATCGCCGACCCACAAGGCCATCGTTAGCGGCAA
CAGCAGCAGCAGCAGCAGTCCTGCGACAGAGAGTGTGACCCCGGCTGCTG
TCGAGGAAGAAAGAGAGAGAGACGCCGCTGACAACGCCGCTTCCGCCGGA
AGATTCACGGTACTGGGCAAGTGTCGGTCAGATTCACCCTCATCCAAGGA
GATCAGCAGCAGCAGCAGGGACGGCGAGCAAGATGGTGACACGGAGGAAG
AAATTAGGCTACGACGGGATTCCACCATGTGGGACGATCGCTGTTTGTAT
AGCGCCGACCTCGCGGCAGAGGACGACTTCAATGCGAGCGTAGAAATTGA
ACAGCTGGGGCTCGGGATAGGGCCCGGGGGTGGCTATGGCGACCGAACAA
TCTTTGACTCGGCACTCCTTGAGGCGAGTGCACACCTTCAGGCCGGTCTG
ATCTTCGTCATACTTCGTCATCAAGTTTACCCGAAGTTCGTGGCACGGGT
AGCTAATAGCAGCAGCTGCCATTCCTCAACGTCATCGACAACCGTCCATA
CCGCAACGTTATCGACGACTTCGATATCAACAACAACACTGGGAACCCCC
GTCAAGCCCATCAAAGCGAACAGGGTTTCGTTGTCGCAGTCGGAGGAGGT
TGCAAAGGCGGTGAGGGCTGAGCTTGCGAAATGCTACTTCTGA
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