mRNA_Ecto-sp8_S_contig1127.1632.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig1127.1632.1 vs. uniprot
Match: D7FKD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD5_ECTSI) HSP 1 Score: 1592 bits (4121), Expect = 0.000e+0 Identity = 840/911 (92.21%), Postives = 855/911 (93.85%), Query Frame = 1
Query: 1 MKSEGGGQVRKGTRVDCLFGDEYFRGKVDDTDGGGSSYRVIFDDGDIREDAPPEDLELPLEQGCRVECMFEGEGGYFDGVISIDNGDATYKVDFDDGDVLDAAPRHDIRVLSWPHEESAPSNAVTAEENNTNVAEQEGKDFDTRYSDRSHNEAESEGNREAQEDDENSKGISAAHGELPPGEETHDSPHRPQRFSEVDGSEDGYGRAGDEPAGTSQHGSGEKDLGSSSGEPQRNHDSWTGRELRGTPSNRNEPTTELVQASSLCVPTSPNPLHAHLEALAAAAPRLLAEAPPDFRLSAISHRIAALEEQLRQQEARGEAWHLTVFSAETPLHPADPSLRGRPERQGRSDPEQATGSGGEGSPRATTARGGAAAPPFPAHAELRKVAEDLSTLRMKQARDTHPDFSPTFPALSLVRLCYGDASLEMVQAIADLADGYAKEDLWPQASNNIVSNHMARAADILARDKGSRFPGNGFFITATLGGGTYVDPRLRFEGHSGLRGEEPRGGFTERQRARGLAFPTENRYSDPALCRSLTPAGSARLLLELLKGLRLSVVAGGERGQVERENFEVFLSTHKDKALRSARPRLLLEAQMPSNCGWGAALGCLRRNSPLFADLNLKIMEGVQQKQAAKVRLAFQAVDPDGTGCAEAEILALMVADDEEETVVEGGVGVARQRLRSLLHVRVQTLTGRCETHTNRLAAASRNLSESLTELERLGVGEASGSVPVLNALTDALALTHRRHQEMSSIKAKKLAETWIQGKEGQDLWKQECKRLVLECRRRLEVVPRAEIEERTWQALVAYRSKILTRELGGKGKELDTAEDYLVRAWEILESRHGRNDPDVGAACVSLGNLAVIRRRLNEAIDWFRRALRTFEVLEEATGLMEKAATFYSERVTTAAERDRSAFVRPATVSI 2733
MK+EGGGQVRKGTRVDCLFGDEYFRGKVDDTDG GSSYRVIFDDGDIREDAPPEDLELPLEQGCRVECMFEGE GYFDGVISIDNGDATYKVDFDDGDVLDAAPRHDIRVLSW HEESAPS AVTAE+NNTNVAEQEG FDTRYSDRSHNEAESEGNREAQ+DDENSK ISAAHGELPP EETHDSP +PQRFSEVDGSEDGYGRAGDEPAGTSQHGS + LGSSSGEPQR HDSWTGRELRGT SNRNEPTTELVQASSL VPTSPNPLHAHLEALAAAAPRLLAEAPPDFRLSAISHRIA LEEQLRQQEARGEAWHL VFSAETPLHPADPSLRGR ERQGRSDPEQATGSGGEGSPRATTARGGAAAP FPAHAELR+VAEDLSTLRMKQ ++LVRLCYGDASLEMVQAIADLADGYAKEDLWPQ VSNHMARAADILARDKGSR PGNGFFITAT GGGTYVDPRLRF+GHSGLRG+EPRGG+ E QRARGLAFPTENRYSDPALCRSLT A SARLLLELLKGLRLSVV GGERGQVERENFE FLSTHKDKALRSAR RLLLEAQMPSNCGWGAALGCLRRNSPLFADLNLKIMEGVQQKQAAKVRLAFQAVDPDGTGCAE+EILALMVADDEEET VEG VGVA QRLRSLLHVRVQTLTGRCETHTNRLAAASRNLSE+L ELERLG+GEASGSVPVLNALTDALALTHRRHQEMSSIKAKKLAETWIQGKEGQDLWKQECKRLVLECRRRLEVVPRAEIEERTWQALVAYRSKILTRELGGKGKELDTAEDYLVR WEILESRHGRNDPDVGAACVSLG+LAVIRRRLNEAIDWFRRAL TFE LEEATGLMEKAATFYSERVTTAAE DRSAFVR ATVSI
Sbjct: 1 MKAEGGGQVRKGTRVDCLFGDEYFRGKVDDTDGSGSSYRVIFDDGDIREDAPPEDLELPLEQGCRVECMFEGEDGYFDGVISIDNGDATYKVDFDDGDVLDAAPRHDIRVLSWSHEESAPSKAVTAEDNNTNVAEQEGTGFDTRYSDRSHNEAESEGNREAQKDDENSKVISAAHGELPPVEETHDSPRQPQRFSEVDGSEDGYGRAGDEPAGTSQHGSSPRHLGSSSGEPQRIHDSWTGRELRGTLSNRNEPTTELVQASSLYVPTSPNPLHAHLEALAAAAPRLLAEAPPDFRLSAISHRIAVLEEQLRQQEARGEAWHLPVFSAETPLHPADPSLRGRLERQGRSDPEQATGSGGEGSPRATTARGGAAAPSFPAHAELRQVAEDLSTLRMKQ--------------IALVRLCYGDASLEMVQAIADLADGYAKEDLWPQ-----VSNHMARAADILARDKGSRVPGNGFFITATPGGGTYVDPRLRFKGHSGLRGDEPRGGYPEGQRARGLAFPTENRYSDPALCRSLTQARSARLLLELLKGLRLSVVEGGERGQVERENFEAFLSTHKDKALRSARHRLLLEAQMPSNCGWGAALGCLRRNSPLFADLNLKIMEGVQQKQAAKVRLAFQAVDPDGTGCAESEILALMVADDEEETAVEGRVGVAWQRLRSLLHVRVQTLTGRCETHTNRLAAASRNLSEALAELERLGLGEASGSVPVLNALTDALALTHRRHQEMSSIKAKKLAETWIQGKEGQDLWKQECKRLVLECRRRLEVVPRAEIEERTWQALVAYRSKILTRELGGKGKELDTAEDYLVRVWEILESRHGRNDPDVGAACVSLGSLAVIRRRLNEAIDWFRRALGTFEALEEATGLMEKAATFYSERVTTAAEEDRSAFVRQATVSI 892
BLAST of mRNA_Ecto-sp8_S_contig1127.1632.1 vs. uniprot
Match: A0A6H5JCV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV6_9PHAE) HSP 1 Score: 966 bits (2498), Expect = 0.000e+0 Identity = 545/774 (70.41%), Postives = 567/774 (73.26%), Query Frame = 1
Query: 1 MKSEGGGQVRKGTRVDCLFGDEYFRGKVDDTDGGGSSYRVIFDDGDIREDAPPEDLELPLEQGCRVECMFEGEGGYFDGVISIDNGDATYKVDFDDGDVLDAAPRHDIRVLSWPHEESAPSNAVTAEENNTNVAEQEGKDFDTRYSDRSHNEAESEGNREAQEDDENSKGISAAHGELPPGEETHDSPHRPQRFSEVDGSEDGYGRAGDEPAGTSQHG-----------------------------------------------------SGEKDLGSSSGEPQRNHDSWTGRELRGTPSNRNEPTTELVQASSLCVPTSPNPLHAHLEALAAAAPRLLAEAPPDFRLSAISHRIAALEEQLRQQ------------EARGEAWHLTVFSAETPLHPADPSLRGRPERQGRSDPEQ----ATGSGGEGSPRATTARGGAAAPPFPAHAELRKVAEDLSTLRMKQARDTHPDFSPT----------------------FPALSLVRLCYGDASLEMVQAIADLADGYAKEDLWPQASNNIV------------------------------------------------------------SNHMARAADILARDKGSRFPGNGFFITATLGGGTYVDPRLRFEGHSGLRGEEPRGGFTERQRARGLAFPTENR----YSDPALCRSLTPAGSARLLLELLKGLRLSVVAGGERGQVERENFEVFLSTHKDKALRSARPRLLLEAQMPSNCGWGAALGCLRRNSPLFADLNLKI 1857
MK+EGGGQVRKGTRVDCLFGDEYFRGKVDDTDGGGSSYRVIFDDGDIREDAPPEDLE+PLEQGCRVECMFEGE GYFDGVIS DNGDATYKVDFDDGDVLDAAPRHDIRVLSWPHEES P+NAVTAE+N TNV EQEGK DT YS+RSHNEAESEGNREAQ++D+NSKGISAAHGELPP EETHD PHRPQRFSEV GSEDGYGR GDEPAGTSQH SGE+D GSSSGEPQRNHDS TGR L GTPSNR+EPT ELVQA SL VPTSPNPLHAHLEALAAAAP LLAEAPPDFRLSA SHRIAALEEQLRQQ EARGEAWHL VFSA+TPLHPADPSL GRPERQGRS PEQ ATGSGGEGS RAT ARGGAAAP FPAH ELR+V EDLSTLRMKQAR +P ++LVRLCYGDASLEMVQAIADLADGYAKEDLWPQASN++V SNHMARAADILARDKGSRFPG GFFI AT GGGTYVDPRLRFE HSGLRG+EPRGG TE QRARGLAFPTENR YSDPALCRS+TPA +ARLLLELLKGLRLSVV GGERGQVERE FEVFLSTH+DKALRSARPRLLLEAQMP NCGWGAALGCLRRNSP F DLNLK+
Sbjct: 1 MKAEGGGQVRKGTRVDCLFGDEYFRGKVDDTDGGGSSYRVIFDDGDIREDAPPEDLEIPLEQGCRVECMFEGEDGYFDGVISTDNGDATYKVDFDDGDVLDAAPRHDIRVLSWPHEESVPTNAVTAEDNYTNVTEQEGKALDTGYSNRSHNEAESEGNREAQKNDDNSKGISAAHGELPPREETHDPPHRPQRFSEVGGSEDGYGRTGDEPAGTSQHXXXXXXXXXXXXXXXXXXXXSVNYGDNGIAQETRDCDFGHDICSRVKETRSSTRSGEEDPGSSSGEPQRNHDSCTGRNLWGTPSNRDEPTAELVQAPSLYVPTSPNPLHAHLEALAAAAPHLLAEAPPDFRLSATSHRIAALEEQLRQQVGGVLWPCGKGGEARGEAWHLPVFSAKTPLHPADPSLCGRPERQGRSIPEQVSAEATGSGGEGSSRATKARGGAAAPSFPAHTELRQVVEDLSTLRMKQARSAQ--LAPVKLMAARETVAAAIMMSRSVFSYIAQIALVRLCYGDASLEMVQAIADLADGYAKEDLWPQASNSVVVGLSTLHRERSRSTRVHPSWVVRRAKRQGEDSVMPLFQVGDEEPTEVLAAVPSVDELLQVSNHMARAADILARDKGSRFPGTGFFIAATPGGGTYVDPRLRFEEHSGLRGDEPRGGCTEGQRARGLAFPTENRCCARYSDPALCRSITPARAARLLLELLKGLRLSVVEGGERGQVEREKFEVFLSTHEDKALRSARPRLLLEAQMPGNCGWGAALGCLRRNSPFFNDLNLKV 772
BLAST of mRNA_Ecto-sp8_S_contig1127.1632.1 vs. uniprot
Match: A0A6H5J7A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7A2_9PHAE) HSP 1 Score: 171 bits (434), Expect = 2.390e-46 Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 1
Query: 2356 AEIEERTWQALVAYRSKILTRELGGKGKELDTAEDYLVRAWEILESRHGRNDPDVGAACVSLGNLAVIRRRLNEAIDWFRRALRTFEV 2619
++IEERTWQALVAYRSK+LTRELGGKGKELDTAEDYLVRAWEILESR GRNDPDVGAAC+SLGNLAVIRRRLNEAIDWFRRAL TFEV
Sbjct: 19 SQIEERTWQALVAYRSKVLTRELGGKGKELDTAEDYLVRAWEILESRQGRNDPDVGAACISLGNLAVIRRRLNEAIDWFRRALETFEV 106
BLAST of mRNA_Ecto-sp8_S_contig1127.1632.1 vs. uniprot
Match: A0A835Z0D6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0D6_9STRA) HSP 1 Score: 108 bits (269), Expect = 3.040e-24 Identity = 56/97 (57.73%), Postives = 65/97 (67.01%), Query Frame = 1
Query: 40 RVDCLFGD-EYFRGKVDDTDGGGSSYRVIFDDGDIREDAPPEDLELPLEQGCRVECMFEGEGGYFDGVISIDNGDATYKVDFDDGDVLDAAPRHDIR 327
RVDCLF D EY+RG V + G+ YR++FDDGDIR DAP DL PL G RV C F E YF GVI DNGD TY + +DDGD L++A R DIR
Sbjct: 10 RVDCLFDDGEYYRGSVAAANADGT-YRIVFDDGDIRHDAPLSDLLSPLLPGTRVSCYFPSEADYFPGVIGADNGDGTYHIRYDDGDELESASRRDIR 105 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1127.1632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig1127.1632.1 >prot_Ecto-sp8_S_contig1127.1632.1 ID=prot_Ecto-sp8_S_contig1127.1632.1|Name=mRNA_Ecto-sp8_S_contig1127.1632.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=911bp MKSEGGGQVRKGTRVDCLFGDEYFRGKVDDTDGGGSSYRVIFDDGDIREDback to top mRNA from alignment at Ecto-sp8_S_contig1127:1510..12196+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig1127.1632.1 ID=mRNA_Ecto-sp8_S_contig1127.1632.1|Name=mRNA_Ecto-sp8_S_contig1127.1632.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=10687bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1127:1510..12196+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1127:1510..12196+ >mRNA_Ecto-sp8_S_contig1127.1632.1 ID=mRNA_Ecto-sp8_S_contig1127.1632.1|Name=mRNA_Ecto-sp8_S_contig1127.1632.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=2733bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1127:1510..12196+ (Ectocarpus species8 EcLAC_412)back to top |