mRNA_Ecto-sp8_S_contig11209.1568.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11209.1568.1
Unique NamemRNA_Ecto-sp8_S_contig11209.1568.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11209.1568.1 vs. uniprot
Match: D8LKD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD5_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 1.940e-63
Identity = 251/286 (87.76%), Postives = 252/286 (88.11%), Query Frame = 1 
Query:    1 RSTGGEAYGRDDEDFVAELDFVCQERGPQHQQSHDGGDSDGDAVTSRQQARSISASGGGSGLGYGSSGDEGRSSESXXXXXXXXXXXXXXXXXXXXXXXMGLGLGMNVEPHSLLTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------GSPCARCGTPSPNEAEEGMMFDMGAMDMDLGLAPPPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANGSNHVVGPLGGGGMGLRASRGSGFPWPPANRE 834
            RS GGEAYGRDDEDFVAELDFVCQERG Q QQSHDGGDSDGDAVT RQQARSISASG      YGSSGDEGRSSE XXXXXXXXXXXXXXXXXXXXXXXMGLGLGMNVEPHSLLTA       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        GSPCARCGTPSPNEAEEGMMFDMGAMDMDL        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANGSNHV+GPLGGGGMGLRASRGSGFPWPPANRE
Sbjct:  387 RSAGGEAYGRDDEDFVAELDFVCQERGQQQQQSHDGGDSDGDAVTCRQQARSISASG------YGSSGDEGRSSEXXXXXXXXXXXXXXXXXXXXXXXXMGLGLGMNVEPHSLLTAVSATATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPCARCGTPSPNEAEEGMMFDMGAMDMDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANGSNHVLGPLGGGGMGLRASRGSGFPWPPANRE 666
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BLAST of mRNA_Ecto-sp8_S_contig11209.1568.1 vs. uniprot
Match: A0A6H5KVH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH6_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 9.350e-27
Identity = 80/104 (76.92%), Postives = 82/104 (78.85%), Query Frame = 1 
Query:  523 GSPCARCGTPSPNEAEEGMMFDMGAMDMDLGLAPPPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANGSNHVVGPLGGGGMGLRASRGSGFPWPPANRE 834
            G+PCARCGTP  N+AEEGMMFDMGAMDMDLGLAP      XXXXXXXXXXXXXXXXX          X  ANGSNHVVGPLGGGGMGL ASRGSGFPWPPA RE
Sbjct:   30 GTPCARCGTPPSNDAEEGMMFDMGAMDMDLGLAP------XXXXXXXXXXXXXXXXXPAPVFIGSGSXGGANGSNHVVGPLGGGGMGLTASRGSGFPWPPAIRE 127
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11209.1568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKD5_ECTSI1.940e-6387.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVH6_9PHAE9.350e-2776.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11209contigEcto-sp8_S_contig11209:3..5248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score232.3
Seed ortholog evalue2.8e-58
Seed eggNOG ortholog2880.D8LKD5
Model size834
KEGG koko:K01090
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
Cds size834
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11209.1568.1prot_Ecto-sp8_S_contig11209.1568.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11209 3..5248 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143200.8959908-CDS-Ecto-sp8_S_contig11209:2..791681143200.8959908-CDS-Ecto-sp8_S_contig11209:2..79Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11209 3..79 +
1681143200.9044414-CDS-Ecto-sp8_S_contig11209:1177..13161681143200.9044414-CDS-Ecto-sp8_S_contig11209:1177..1316Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11209 1178..1316 +
1681143200.9112844-CDS-Ecto-sp8_S_contig11209:2488..25631681143200.9112844-CDS-Ecto-sp8_S_contig11209:2488..2563Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11209 2489..2563 +
1681143200.921277-CDS-Ecto-sp8_S_contig11209:2914..30231681143200.921277-CDS-Ecto-sp8_S_contig11209:2914..3023Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11209 2915..3023 +
1681143200.9323301-CDS-Ecto-sp8_S_contig11209:3566..37411681143200.9323301-CDS-Ecto-sp8_S_contig11209:3566..3741Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11209 3567..3741 +
1681143200.9408376-CDS-Ecto-sp8_S_contig11209:4989..52481681143200.9408376-CDS-Ecto-sp8_S_contig11209:4989..5248Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11209 4990..5248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11209.1568.1

>prot_Ecto-sp8_S_contig11209.1568.1 ID=prot_Ecto-sp8_S_contig11209.1568.1|Name=mRNA_Ecto-sp8_S_contig11209.1568.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=278bp
RSTGGEAYGRDDEDFVAELDFVCQERGPQHQQSHDGGDSDGDAVTSRQQA
RSISASGGGSGLGYGSSGDEGRSSESGHGSTSDEGIMSEVGMALTSQEAM
GLGLGMNVEPHSLLTAAAAAQEESAKDVPPVARPLFGGGGGGGKYIPPAM
RAAARAEAAAAAAAAAATAGGEGGGSPCARCGTPSPNEAEEGMMFDMGAM
DMDLGLAPPPRSATPPTPAPPPPPPQQPSASPASAFIGSGGGGGANGSNH
VVGPLGGGGMGLRASRGSGFPWPPANRE
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mRNA from alignment at Ecto-sp8_S_contig11209:3..5248+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11209.1568.1 ID=mRNA_Ecto-sp8_S_contig11209.1568.1|Name=mRNA_Ecto-sp8_S_contig11209.1568.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5246bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11209:3..5248+ (Ectocarpus species8 EcLAC_412)
AGGTCCACGGGGGGCGAGGCGTACGGAAGGGACGACGAAGACTTTGTTGC
CGAGCTCGACTTCGTGTGCCAAGAGCGGTGAGAATGAGAGGGAGAGAGAT
TGGGGGGAGGGGGGGGGAGAGAGAGACAAAGACGGAGAGAGAGAGAGAGA
GAGAGACAGACAGACAGACAGACAGACAGACAGACAGATATGCCCCATTC
TTCCCCCCAAACCCTCCACAGATATTTTGTTAAGCATTGGTAGGTTGCGT
AATATACCACACATTGGACTGATATTTACTGCTAAAAGCTTCATTAATTT
CACGGCGAAGAGGATACCAGCATCAACTGATGCCTTTTCGGAGTGGTCTC
TCTCGACGAGACGAGCCTGTTGTTTTGTGCTACAGATTACAATCGAGCCT
TGGAAATCGGTGAAGGGGTTGTACAACCTTACCTTGCGTAGTCGAGAGCA
AGCAGTCGAGAGCAAGCATGCAGCGTCTGGTGACAAGGGCGGCACCAAGT
GTCTGGTGGGGCATGCGGGGGGGGGGTTCAGATGGGTGTGCCACGTTCCA
CGCTTCAGGCCGTGTACTAACGATGCTCGAAAAATCAACTCGACAAGGCA
AAAATAACAATATTGGGCTCTGCTGAGCGGAAAGAGAAAAACAAGACATT
TTTTTTGTGCATATGTTTGCTTCTTGTTTGGAAGTAAAATGTCCTGCAGG
ATTGATTTTTTTCAGCCGGAAATCAGTAATCGAGTTGCATTGTTCTCCTT
GTAGCCCAGACGAGGCTCAAGTGTTGATCTTCGACCAATCAAAGTTCGGA
TTCGAATGTCGGTGATACGTTAATGCGCTATTAAATGCCGGGCCTCACGA
ACGTTTAGGACACCGATCGGTCCGCGACACCCCCCCCGTTTCCCGATTAT
CTTGTCATTGGTGATTGGATACAGATGGCTATTTAGTAGGCGTGCGGATG
TGCGGATACCGCAGCCGATGCTGCTTGCGGCCTTCGTCCCATCCATAGCA
AGCGCTTACAGAGTTGCACTCCTCACCCACCCTCTCATATTGTCCGTGCC
CCCCCCCCCCCCCCCCCCCTCTTTCCCCCCCCCCACGCACATCACTGTAG
TAGCCCCTCCCTCCCCCCCCCCCCCCTATCTTCTCCGGCCCCCCCCCCCC
CCCCCGGTTTTCTCACCCAAACCAGAGGGCCGCAGCATCAGCAGTCTCAC
GATGGCGGCGACAGTGATGGCGATGCCGTCACAAGCCGGCAGCAGGCTCG
GTCTATCAGCGCGTCTGGCGGTGGGAGCGGCCTTGGTTACGGCTCATCGG
GGGACGAGGGCCGGGTGAGTAATGCCATGTGTAACAGGGAGGTAGTGCTG
TACTGTACGCCGCAATTGGGCCAGGAGCACTGCTGTACAGTAGTGGGTTT
TCGGGCAGTGGTTTCGTCCGTGCCCTCTAATGCACCCATTACATTGTGCG
TCGTGCTTGATGATAACTTCCTCCATGTTGGTAGCTGGCATGTGACCATG
GAAGGCGTCCGCGTCTGTTGGACCAGTACAGATATGAGAAAGTCCTCAGT
GCTAGTCCGCACAATCGTCCCCGCTTAAAGGGGGGCAAGAAGAGTAAGGG
CAACTATAATAATACTCCCCGCTCTTACGGACGCCATTTACGTTCGCCAG
TGTGCAGTGCTGTTACTTTACGTGCATTTCGCAAACCCTTTTCGGGTACT
GCTGTTTTTGGCCGTGACCACGGAAAGGCGTTTCTCCGCGTCAGTTGGAC
CGGGTAACGGATGTTTATTTTTAGCAGGTACTCCTACTGAAGTGAGCCGG
GAACGAAAGTTTGTTACCGTCAAGGCAGCAACGTTAGTATGACAGTCGTT
CACATCTGAAAGTGTTTTTCGTCGTTAGGTACTTGTAGGAAATGTGCGTA
CAATCACAGAACGACTATTGCACTCGTTCGTTATATAACAACCTTAACCT
GACAGAAAATTGCTGTGTGTGCGTGTGCGATTCTTCAGTAACCCACAACA
GTGGCAATGCTGTGTGTATCGTCTTAACGCCTTAGCCAACACTGCTACGC
ATACAGATGGTAGTAGTACCCCCCTCAGAAGCGCTCGAGGCAGCATCCCA
TGTCTCGCCTGTTTTTTTGTTTCTTTTTTCTGACACTCGTGCGATGAGTC
CGACACCTCTGCCATGGCTCGCACATAAGGCCAGGCATTAACGACGTCCG
AAAAAGCAAGACTTATTTATCGATTTTGCAAGCTCTGATTGGTTGAAGAT
AAGAAAAATGACGTTTCTGGGTTCCCAGCAGAGCTCAATTTGGTGCACTT
TTGGAACTCCTCCGCGCCCCCCCCCTCCCCCCCCCCTCCCGTTTCAATTT
TTTCTGCGTACTTCCTGTTAGTTTTTCATCCGTGTTCTCCCCCCTCTTAT
TAATGTTTGGTTTGTGTGCCCCCCCCCGCGCCCGATGTTGTGCTCTGGGG
CCGACAACTACGGCTGGAATTTATGGCGACGAAAAGAGTTCCGAATCAGG
CCACGGATCCACTTCGGACGAGGGCATCATGTCCGAGGTCGGCATGGCTC
TCACGTCTCAGGTATGTATGTATCTTATGTCAGGACAAGGACTGCTGTCA
TGGGGCGGTGGATGCTCAAGCCCCGACTGCGTGTGTTTTGAGCACGTGCT
CTTGGTCGTGCATGTTGTGTTCAACCTGCTCGAGTGCGTCCGTGCCAGAG
CGTAGCAGCGATCCAACAACAAGCAAAGAGCGATAAGGGCACAGCAGTGG
CCGCCGTACAAGAGCTTGAGACAAGAGCTTGAGACAAGAGCTTGAGACAA
CAGCAGTGCGGTTTGATTATTTATCGTTCGTTCGAACGGGATTCGTTGCT
GCAACTCTTCGCATGACTTTCCCCTAAGATCTTGTGTACACGCTTCTTCT
TTTTGTTTCAAGGAGGCCATGGGACTGGGCTTGGGCATGAACGTGGAGCC
CCACTCGCTTCTGACCGCGGCGGCGGCGGCTCAGGAGGAATCGGCGAAGG
ACGTGCCTCCCGTAGCCAGACGTGAGCGAGGCCCTCTGTTGCTGTTGATG
ATGGTGGTGGCGGTGGTGGTGGCAGTAGTGTTTTGATGTTGTTGGTATGC
TGTTGTTGATGGTGATGTTGGCGGTGTTGGTATTGGTAGTGGTGCGGTGT
GGTGGTTTGTTGTTGTTGGAGATGTTGATGCTCTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGTTGATGGTGATGTTGGTGGCGGTATTGGTGGTGTTGTGGTGTGGT
GTGGTGTTGTGTTTTTGTTGATGGTTCTGTAGCGGTGTTGATGATGTTGG
TATGTGGTTGGTGCTGCTTGTGGCACCACTACTGATGTTGCTGCTGCTCT
CCTGCAGCTGGCGTTGTTTGCCGCTGCCACTGCTCCGCTGCTGTGCGGCT
GATGTGCGGCTGCTGTCGCCTTAACATGTTATTCGCAACGAAAACCTCAA
TCTTCCTGATATCTGCTATGCCCTACCCCCATATGTACGTCCGTCGGCAC
CCCTCCCCCGACAGCCCTATTTGGCGGTGGTGGTGGCGGTGGCAAATACA
TCCCACCAGCCATGCGGGCGGCGGCCAGAGCAGAGGCGGCCGCAGCAGCA
GCGGCGGCGGCGGCGACGGCTGGCGGGGAGGGTGGGGGTAGCCCCTGCGC
CCGTTGCGGGACCCCGTCTCCCAACGAAGCAGAGGAAGGGTGAGAGAGAT
GATCATGCCACTACGGTAATAGTAGTGAGATAACCATGCCACTGTGGTAA
TAGTAGTGAGATGATTATGGTGCTACGGTAATAGTAGTAGTGAGATAACC
ATGCCACTGTGGTAATAGTAGTGAGATGATTATGGTACTACGGTATTAGT
AGTGAGATGACCATGTCACTACGGTAATAGTAGTGAGACGATTATGGTAC
TACGGTAATAGTAGTGAGATAACCATGCCACTGTGGTAATAGTAGTGAGA
TGATTATGGTACTACGGTATTAGTAGTGAGATGACCATGCCACTACGGTA
ATAGTAGTGAGATGATTATGGTACTACGGTAATAGTAGTGAGATGATTAT
GGTACTACGGTAATAGTAGTGAGATAACCATGCCACTGTGGTAATAGTAG
TGAGATGATTATGGTACTACGGTAATAGTAGTGAGATGATTATGGTACTA
CGGTATTAGTAGTGAGATAATCATGTCACTACGGTAATAGTAGTGGGCCC
TGAAAAAGAGTTGCGTTGCGGTCCCTGTAGTTCGCCCGCATGGTTGTAGT
GCCAAGGGATTTGGCCAGAGGTATATTGGCCACCCGGTGCTATCAACAAC
AGCAGTAGCAGTACTGATAAAACCTTACAGAAGCAAATGTAATGAAAGGA
ACGATCGGCCGTGTTTATGCGGCCTTAATGCTTATGTACCAGGGACTTCT
CTTTTTTCGCCCGTGAACAGCACACGCACATGATTGCACCAATGGTAGAT
CCATACTTGCTCCACTACAAACTAGCATTCAAACACGATGAGGAACGACG
TGCGGGGTATTGGGTTGTTGGAGCGAGGGTGCTGGGTGCTGCGGTTGTTG
ACCTATGGTGCTCGACCTGGCCGTTGTCTAATTGGTGTTGGTAACGAATG
GTGGATGGCCAGTGCTGTTGGTACCAGCAGTAGTTGTACATGCAGAATAT
CGCACTCGTGTACTAGCAGCACGCACGACCGCGTTGCAACAAGTTGGGTG
TATAACCCTACGGCGACTATACATGTAGACCATACGGCGACTATACTACA
TGTAGGTCTACGGACACGATTCTTGAGCGCATGCTCCTCTGCATGCTCAA
GTTCTTGAAATTGTATCTTTCTGAACCTGGTAGTGGCGAGTCCCGTATGT
ATAGAGCCCCAACGCGTGGGGACCATACAGTACCACGTGACACAAACGCT
GAACAAACACTATTTGACCCACGTGTAAAACATTCAGGATGATGTTCGAC
ATGGGCGCGATGGACATGGACTTGGGCCTAGCACCACCTCCGCGGTCGGC
CACACCGCCGACCCCAGCGCCGCCGCCGCCACCGCCTCAGCAGCCCTCTG
CATCACCAGCATCCGCCTTCATCGGTAGCGGGGGTGGTGGTGGCGCAAAC
GGCAGTAACCATGTGGTCGGCCCGTTAGGGGGAGGGGGGATGGGGCTGAG
AGCTTCGAGGGGATCGGGGTTCCCGTGGCCTCCGGCGAACAGAGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11209:3..5248+

>mRNA_Ecto-sp8_S_contig11209.1568.1 ID=mRNA_Ecto-sp8_S_contig11209.1568.1|Name=mRNA_Ecto-sp8_S_contig11209.1568.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=834bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11209:3..5248+ (Ectocarpus species8 EcLAC_412)
AGGTCCACGGGGGGCGAGGCGTACGGAAGGGACGACGAAGACTTTGTTGC
CGAGCTCGACTTCGTGTGCCAAGAGCGAGGGCCGCAGCATCAGCAGTCTC
ACGATGGCGGCGACAGTGATGGCGATGCCGTCACAAGCCGGCAGCAGGCT
CGGTCTATCAGCGCGTCTGGCGGTGGGAGCGGCCTTGGTTACGGCTCATC
GGGGGACGAGGGCCGGAGTTCCGAATCAGGCCACGGATCCACTTCGGACG
AGGGCATCATGTCCGAGGTCGGCATGGCTCTCACGTCTCAGGAGGCCATG
GGACTGGGCTTGGGCATGAACGTGGAGCCCCACTCGCTTCTGACCGCGGC
GGCGGCGGCTCAGGAGGAATCGGCGAAGGACGTGCCTCCCGTAGCCAGAC
CCCTATTTGGCGGTGGTGGTGGCGGTGGCAAATACATCCCACCAGCCATG
CGGGCGGCGGCCAGAGCAGAGGCGGCCGCAGCAGCAGCGGCGGCGGCGGC
GACGGCTGGCGGGGAGGGTGGGGGTAGCCCCTGCGCCCGTTGCGGGACCC
CGTCTCCCAACGAAGCAGAGGAAGGGATGATGTTCGACATGGGCGCGATG
GACATGGACTTGGGCCTAGCACCACCTCCGCGGTCGGCCACACCGCCGAC
CCCAGCGCCGCCGCCGCCACCGCCTCAGCAGCCCTCTGCATCACCAGCAT
CCGCCTTCATCGGTAGCGGGGGTGGTGGTGGCGCAAACGGCAGTAACCAT
GTGGTCGGCCCGTTAGGGGGAGGGGGGATGGGGCTGAGAGCTTCGAGGGG
ATCGGGGTTCCCGTGGCCTCCGGCGAACAGAGAG
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