mRNA_Ecto-sp8_S_contig1119.1549.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1119.1549.1
Unique NamemRNA_Ecto-sp8_S_contig1119.1549.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1119.1549.1 vs. uniprot
Match: D7G4S1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4S1_ECTSI)

HSP 1 Score: 510 bits (1314), Expect = 2.930e-181
Identity = 266/275 (96.73%), Postives = 270/275 (98.18%), Query Frame = 1 
Query:    1 MLLKWNCVSATIGYLLARRQAEAFSVVGFQKPQATACRTRALASSVPASSPTQRILDAAPLRGPSRGLLPLHMLAGGDAVQSSVGTKGEEHSVLDALIDQFTSPKSGNVTATVEEYLDLCDHALLTHLRGRIEAEEAQSPEATALKHVEEEINMAMQRRLAAADSNLRQVLDLAPDIKKMEGRIRTLFREGKVNMAFMVMISMNLQRAKDAEGADHAVMLLTHLTTFIMMIQDERLNPEEKLLRTLLRTDCDGVRKSILQDRLQLPNNDVFLVSP 825
            M+LKWN VSAT+G+LLARRQAEAFSVVGFQKPQATACRTRALASSVPASSPTQRILDAA LRGPSRGLLP+HMLAGGDAVQSSVGTK EEHSVLDALIDQFTSPKSGNVTATVEEYLDLCDHALLTHLRGRIEAEEAQSPEATALKHVEEEINMAMQRRLAAADSNLRQVLDLAPDIKKMEGRIRTLFREGKVNMAFMVMISMNLQRAKDAEGADHAVMLLTHLTTFIMMIQDERLNPEEKLLRTLLRTDCDGVRKSILQDRLQLPNNDVFL  P
Sbjct:    1 MILKWNYVSATVGWLLARRQAEAFSVVGFQKPQATACRTRALASSVPASSPTQRILDAAALRGPSRGLLPMHMLAGGDAVQSSVGTKSEEHSVLDALIDQFTSPKSGNVTATVEEYLDLCDHALLTHLRGRIEAEEAQSPEATALKHVEEEINMAMQRRLAAADSNLRQVLDLAPDIKKMEGRIRTLFREGKVNMAFMVMISMNLQRAKDAEGADHAVMLLTHLTTFIMMIQDERLNPEEKLLRTLLRTDCDGVRKSILQDRLQLPNNDVFLERP 275
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BLAST of mRNA_Ecto-sp8_S_contig1119.1549.1 vs. uniprot
Match: A0A835YR16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR16_9STRA)

HSP 1 Score: 135 bits (339), Expect = 3.590e-35
Identity = 77/151 (50.99%), Postives = 104/151 (68.87%), Query Frame = 1 
Query:  355 LCDHALLTHLRGRIEAEEAQSPEATALKHVEEEINMAMQRRLAAADSNLRQVLDLAPDIKKMEGRIRTLFREGKVNMAFMVMISMNLQRAKDA-EGADHAVMLLTHLTTFIMMIQDERLNPEEKLLRTLLRTDCDG---VRKSILQDRLQL 795
            +CD+  L +L GRI      S E T L  V +EIN+AMQRRL AAD+NLR VL  APD+KKME  +R LFR G+ +MAFMV+++MNL +A++A  GA+ AV +LTHL T IM +QD R+ PE +LLR L+R   D     R+ +L+++L L
Sbjct:    1 MCDYGFLMYLNGRIGEAGPDSEEGTKLSAVAQEINVAMQRRLVAADANLRAVLANAPDLKKMEADLRRLFRTGQADMAFMVVLNMNLAQAREAGPGAEGAVAVLTHLNTAIMEMQDTRVAPEVRLLRMLMRASDDDNAEKRRDLLKEQLDL 151
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BLAST of mRNA_Ecto-sp8_S_contig1119.1549.1 vs. uniprot
Match: D7FSF0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF0_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.360e-9
Identity = 51/148 (34.46%), Postives = 85/148 (57.43%), Query Frame = 1 
Query:  337 VEEYLDLCDHALLTHLRGRIEAEEAQSPEATA-LKHVEEEINMAMQRRLAAADSNLRQVLDLAPDIKKMEGRIRTLFREGKVNMAFMVMISMNLQRAKDAEGADHAVMLLTHLTTFIMMIQDERLNPEEKLLRTLLRTDCDGVRKSIL 777
            VE   D  D   LT L  +  A+EA+  +A A L  + + IN  MQRR+A A   L+++L +  + ++ME  I+ +   G+V+ A ++++  NLQ+A++A+ A  AV +L  L        DE+++PE++L+R LLR      R +IL
Sbjct:   64 VETNYDQVDIQFLTLLNQK--AQEAEGTDAAAALTRLGDSINNTMQRRMAQASERLQKILTVG-NPERMEETIKAMAERGEVDDALVLLLQANLQQAEEAD-AGPAVGVLKRLGAAAQAALDEKVDPEKRLVRQLLRAKDREARLNIL 207
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1119.1549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4S1_ECTSI2.930e-18196.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YR16_9STRA3.590e-3550.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FSF0_ECTSI2.360e-934.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1119contigEcto-sp8_S_contig1119:11370..16401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score69.3
Seed ortholog evalue3.1e-09
Seed eggNOG ortholog2880.D7FSF0
Model size825
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG OGs2AUPK@1,2RZUJ@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_000600.1
Cds size825
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143199.7251806-CDS-Ecto-sp8_S_contig1119:11369..117921681143199.7251806-CDS-Ecto-sp8_S_contig1119:11369..11792Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1119 11370..11792 +
1681143199.7356699-CDS-Ecto-sp8_S_contig1119:12318..124141681143199.7356699-CDS-Ecto-sp8_S_contig1119:12318..12414Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1119 12319..12414 +
1681143199.7442396-CDS-Ecto-sp8_S_contig1119:15545..156471681143199.7442396-CDS-Ecto-sp8_S_contig1119:15545..15647Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1119 15546..15647 +
1681143199.7526932-CDS-Ecto-sp8_S_contig1119:16044..161281681143199.7526932-CDS-Ecto-sp8_S_contig1119:16044..16128Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1119 16045..16128 +
1681143199.761242-CDS-Ecto-sp8_S_contig1119:16281..164011681143199.761242-CDS-Ecto-sp8_S_contig1119:16281..16401Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1119 16282..16401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1119.1549.1prot_Ecto-sp8_S_contig1119.1549.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1119 11370..16401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1119.1549.1

>prot_Ecto-sp8_S_contig1119.1549.1 ID=prot_Ecto-sp8_S_contig1119.1549.1|Name=mRNA_Ecto-sp8_S_contig1119.1549.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=275bp
MLLKWNCVSATIGYLLARRQAEAFSVVGFQKPQATACRTRALASSVPASS
PTQRILDAAPLRGPSRGLLPLHMLAGGDAVQSSVGTKGEEHSVLDALIDQ
FTSPKSGNVTATVEEYLDLCDHALLTHLRGRIEAEEAQSPEATALKHVEE
EINMAMQRRLAAADSNLRQVLDLAPDIKKMEGRIRTLFREGKVNMAFMVM
ISMNLQRAKDAEGADHAVMLLTHLTTFIMMIQDERLNPEEKLLRTLLRTD
CDGVRKSILQDRLQLPNNDVFLVSP
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mRNA from alignment at Ecto-sp8_S_contig1119:11370..16401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1119.1549.1 ID=mRNA_Ecto-sp8_S_contig1119.1549.1|Name=mRNA_Ecto-sp8_S_contig1119.1549.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5032bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1119:11370..16401+ (Ectocarpus species8 EcLAC_412)
ATGTTACTGAAGTGGAACTGCGTTAGTGCGACAATTGGGTACCTGCTGGC
AAGGCGGCAGGCTGAAGCCTTCTCGGTTGTTGGCTTTCAAAAACCGCAGG
CCACAGCCTGCCGCACCCGTGCCCTCGCTTCCTCTGTACCAGCTTCATCG
CCGACACAAAGGATCCTCGATGCAGCACCTTTGAGAGGGCCATCGCGCGG
CTTGCTCCCGTTGCATATGTTGGCAGGTGGAGATGCTGTGCAGTCGTCTG
TTGGGACGAAGGGCGAGGAGCACTCTGTTCTCGATGCCCTCATCGACCAG
TTCACATCTCCGAAGAGCGGCAACGTGACAGCTACGGTCGAGGAGTACCT
GGACCTGTGTGATCATGCGTTGTTGACGCATCTCCGTGGGAGAATCGAAG
CCGAGGAAGCGCAGTCCCCAGAGGTGAGGAGGGGGTGATACGCACCCGCA
CATCAACGCACCCATGCCCGCTCACACACACACACTCATTTGCAACCACG
TCAAGTAAAGAGTTCAAGTTACCGTACCAGCAGCTCTTCCCTCCCAAGAG
AGCGGGCGGGGGATTGTTACAGCAGGCTCAGAGGCCCAGAGCCTGCACCT
CACCCTTGCATGTCCACCATTAAGAGACCGTGGCATTTGGATTGTGTGCA
CAGAGTAATCGCGCACCAAGGTTGTCGTCTCTAGGATGATCTGTCCAAGT
GGATTTGCTGTTGCTGCTGGAGTCATGGTGGGTTGCGCTTCGGCGCATCA
TTTGTGTGTACTGCTGGAGCTCCCTACACAGTACACCGCATCATACGCTA
CCAGTCTAATGCTGTACGCACATAGGTACGCGTACATCATGGACGCGGCG
GTTTGTGTATCTTTGAACATGGCCACAGACTGTTAGGTCTTGCACGTACT
TCTATTGTTGACCGTTGTGTGATGTTGGACACTTGTACTTCATTGGCAGG
CCACTGCGCTGAAACACGTGGAGGAGGAGATCAATATGGCCATGCAAAGA
AGACTTGCGGCTGCCGACTCGAACCTGCGACAAGTCCTGGATCTGGTGCG
TTAAGATGATTCGTACAGTAGGTACTGTCGTAAGTGCGTGCTCAATGCAG
CGATTGAGTGATACACATGAATGTGTAGCTGTAGCGTGGTGTGGAACGAG
AAAAATAAAAGGCTTGATTGGCTTGATACAAAATATACCGGAAACACTAA
ACAGAGGAAATGTAGAGAGAGGGTAAACCCCAGATTTCTCCCCTGCAGCA
GTGTAACGCGAAACGTACGCTGTGAGGTCTAGAGGTCGCAATAGTTCATG
GCCATTTGCGGAAAGGAAATGGTCACCTATTGTTTTGTTATCACCTCCAT
TGCTCTGAGGTCGTAGGCAGTATTCCGAGATCACCTATTATAGGCATTAT
GCATATGCAGACGTACATTCGTACACAAGTACGAAGTTCGATGCACATCA
CTTCCCGGTGCGGGCATCCGACCTACCTATCGGCACGGCGTAGTAACGAC
AGCGGTCACGCGCAGTAACACGGAATGCGGCAAACATGTATCCACTCCGG
CCCGTTATCCTGTATCGTTGTGACTCAAGTAGCCCTGTGAGTGTAGTAGC
TGGTTCGATCAAAGTTGGGATGGGTCTCTCTTGACGTTCGGGTCTCTACT
TGGCAAGACACAATCGGCGCTTGGGAAAACGCACAGGAGGCTCCCAGATC
GGCAACTTCAACTCAACGAAATCCGCCGGAGAACTGAGTACGAAGGCCCG
GGGGGGCAAGAAAAGTACGCCTTCGTTCACGTGACGATTAACTTACCGCA
GTAGTTGTCCTCTGTGTCGCATCACCTGCCCTTGTTCAAACGCCCATCGG
AGGAACCTTGTATGCATGGTGTTGCAGTGCTACGAAGGCTGTATGCCGAT
GGCATCACAGATTGGAATATGGTTTTCCGTGTAAACCACGTATCTCGAAT
ACCTGCGAGACCTGGGACGTATTTCTGGTATTCGTTTGAGATCGTTTTCG
TGCCAGATGTGAGGCCTGCCGAAGGGGATATAGTCGTACAGCAGTGCTCC
CGTGGCTGCTGTTGTAGGTGTAGACGCTGGTTGGTTCGTGTAGTCGAAGT
AGGACACGCGTTGTTGGTTCACATGCAGGGGGGCTACTTTTCTTTCCTGA
TTGCCGTGTACCACGGCTGCTTCCCCAATTAATTTTTTCAAGTGCCGTTT
GTGTGTCGTCATGGACGGGGATGGATAGAAAGGTACCTACTATACTCTTC
TTGTGTACTGCTGAAAGCGAGAGCGAGACAGGAGGAGAAGAATGCTGCTA
CGTCGTCTATCTATTACAGGCGCGGAGGAAGCGAGAGGACAGAAAACGCT
CATCATTCGTATGGACAGCAGCACCATTGACGATGCATGCATGTAATGTA
CATTTACACCTACTACTACGGGGTACAGAGTAAACGGCGGTGCCGTGGCT
CTGATGGTGGAATTGATGTCTTGTCATGCGACGCTGCCCGACGACGCGCC
ACTATCCTCGTACCGTACGTTGCGGTTGTGAAGTCAAAGCGCCTAGGTAT
GGCCAGGATCATCGGGCGTTTAGAGAGAGAGGTAGTCAAGAGGTCGGAAC
GTGAACCAAAAGATTTTGCTTTGCACTCCCTTCCAATCTGGGGAGGTTTG
GGAACGAGTAATCCAGAGGGCAGGGAGGTGGAAGTACGATGCGCATTACT
ACTAGCCATACATTCACAGAAAACAATGTGGAGGATTCGCGACGATATTA
GGCGATAAAAAATGGGAGCGGCGAGACAGCCGGGGGAGAACACGGTGTGG
TGTAGTGAACCCATCATGACGACCTCAAATTGGGTAGAGTAAATAATGGT
ACAGTACCATTTGGGGACTTGGTCGTCTGAGAGGTTCCGTACAGTAGAAA
GAGTTCCCCACACCGGTGGAAAGAGAAACCCCGGGCTGTTTTCTAGGGGA
AGAGATAGAGACAGCTGAGGGGCAGAGACACGTTAGAACAGGCGCAGAGG
GAGTCTGCAGGAAATAAACGTGTTCTGTCAGTCAGTGTGGTTTCTCTCTT
CCCCGCGTGTGAAGAGAAAACATTTTAATAATGGCAATTCGAAAGAAAAA
CAGTAAATTTAATAGCAAGTTTGGTGAGGCAGATAAGCCGATGCAGACTG
CTGTACTGTTTATTGAAACCGTCGAATTTTCCAGAGGCGTTTGTTTTTGT
TGCTGTATTTCGGGGTATCAGAATGGGAAAAATATTGTGGAGTGGTCACT
TTCTCGGAGAGTTCATGTGTAAGGAGACGCTGGACAAGCAAGCGTGCCAT
AGCAGAACTACACAACCGTAGTAGGTGAACTCAGAGAGAGGATACAAAGA
ATTTTGGCCAGGTTAGGAGGCCAAGAAATTCCACGACATAGGTACAGCAG
TGGCTGTGCAGCAAACACGGCAACAAGAACGTGGTGACGTGCAGAAATTC
ATGTCACTTCTTCCTGCGGACCGCGTTTTGGATCTTGTGTGCATGCATGC
ATGCATTCAGACTTGTTGTACAGCGGTTGTTGTTGTCTATTAAAACCGTT
CCGGTCTCCGCTCAGTACCATATCGCTGTGTGCTGTTCGGGGAATAATGG
AAATACAGGTAGCCTTCGCTGATGCCATGGGTTCATTGCTAATCTGTCTT
CAACGCGTTCTCACTTGTTAATTCAACTGAGATGTGTCACATTTTTGACT
CGATTTAACTATTGGTTTCGAAAACACGTTTTCACTTGTTAATTCATCTG
AGATGTGTCACATTTTTAACTTGACTACAGAGAGCTTTTCGATCACTCTT
TTGACGTGACTACAGAGTGCATTTCGATCAGTTTTTTTACTTGATTACAG
AGTGGGTTTCGATCAGTTTTTTTACTTGATTCATGTATCGAAATTTCGGA
CAGGATTATTTTTTATTGCTTTTTTCGGGATTGCTCTGACTGAAACCACG
TTTTTGCAATTGGGGAACACACAAGCTTGCAGTATCAAAGCAGTTGGGTA
CATGGGCATTACATGAGCAAAATTCCTCAATCTTTGTCTGGAATCCCCCC
CCCCCCCTTCTCGTTCTTGTGCTGACAACTGCTGACAACTAATGAGTGCC
CCGTTCTTAAAGCGCTTGGTATGCCTCGCCTACATACCTCACAACGGTGT
GTTGCTAAATCCTTTCCGCCGAGCAGGCCCCTGACATCAAGAAGATGGAG
GGCAGAATCCGAACACTATTTCGGGAGGGAAAGGTCAACATGGCCTTCAT
GGTCATGATCAGCATGAACTTGCAACGGGTGAGGTGACAACTTCGACACG
ATTATATGGGGCTATGTTGCACCAGAAATGCCCATCTAGCAAATACTATT
GCCTATCAATTGTGTCTTTTCCCACGGCGTGAAGAGCCTAGAGTCGCGGT
CTTCATGCTGTGCCAGAACGGCAACCTAGGACCTTTTCGGGATTGGGTTT
GCTTGCATTTTTTGGTCGTTTTTCTCAGTCGCAGCACGCATGTTACACCT
TGAATGAACGAAATAGATTCGAGAGTGTATACGTTTACTTTGAAGAGCGG
GATATCTTCGTGGACCTTGAGATTCGGACTCTGTAAACTGCGTTGGAGAA
GGGACAGTTTCCTCAACCTGTAAACGTCAGCATCATTCGGAGTAACTCTC
ATATTGTCCTTTGTTTTTTCTCCAGGCCAAGGACGCTGAGGGAGCGGATC
ACGCCGTTATGCTTTTGACACATCTGACGACTTTCATCATGATGATACAA
GATGAGCGGGTGAGAGGGCGTGACACGTCATGAGTTGAAGCCCGATATCC
CTTGCATGCGTAGCCAAAAGTGCGAGGTCGGCATCTAGGCTACAGTCATA
CTGCCCTCGTCGCCCACGGTACTGCTACCCATGCCGGCGTGCACGAATCC
TTTCTTACCCAGTTGAACCCAGAGGAGAAGCTGCTGCGGACACTGCTGCG
GACAGACTGTGATGGCGTCAGGAAGTCCATTCTCCAGGATCGATTACAAC
TGCCCAACAACGACGTGTTTTTGGTGAGTCCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1119:11370..16401+

>mRNA_Ecto-sp8_S_contig1119.1549.1 ID=mRNA_Ecto-sp8_S_contig1119.1549.1|Name=mRNA_Ecto-sp8_S_contig1119.1549.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1119:11370..16401+ (Ectocarpus species8 EcLAC_412)
ATGTTACTGAAGTGGAACTGCGTTAGTGCGACAATTGGGTACCTGCTGGC
AAGGCGGCAGGCTGAAGCCTTCTCGGTTGTTGGCTTTCAAAAACCGCAGG
CCACAGCCTGCCGCACCCGTGCCCTCGCTTCCTCTGTACCAGCTTCATCG
CCGACACAAAGGATCCTCGATGCAGCACCTTTGAGAGGGCCATCGCGCGG
CTTGCTCCCGTTGCATATGTTGGCAGGTGGAGATGCTGTGCAGTCGTCTG
TTGGGACGAAGGGCGAGGAGCACTCTGTTCTCGATGCCCTCATCGACCAG
TTCACATCTCCGAAGAGCGGCAACGTGACAGCTACGGTCGAGGAGTACCT
GGACCTGTGTGATCATGCGTTGTTGACGCATCTCCGTGGGAGAATCGAAG
CCGAGGAAGCGCAGTCCCCAGAGGCCACTGCGCTGAAACACGTGGAGGAG
GAGATCAATATGGCCATGCAAAGAAGACTTGCGGCTGCCGACTCGAACCT
GCGACAAGTCCTGGATCTGGCCCCTGACATCAAGAAGATGGAGGGCAGAA
TCCGAACACTATTTCGGGAGGGAAAGGTCAACATGGCCTTCATGGTCATG
ATCAGCATGAACTTGCAACGGGCCAAGGACGCTGAGGGAGCGGATCACGC
CGTTATGCTTTTGACACATCTGACGACTTTCATCATGATGATACAAGATG
AGCGGTTGAACCCAGAGGAGAAGCTGCTGCGGACACTGCTGCGGACAGAC
TGTGATGGCGTCAGGAAGTCCATTCTCCAGGATCGATTACAACTGCCCAA
CAACGACGTGTTTTTGGTGAGTCCC
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